Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XZQ	10665	2024-09-25	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.89	0.01	1.924	5.93	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.007	0.87	1.0	0.04	16.31	0.01	2.025	9.13	1.22	7.3	92.7	0.0	-1.51	0.77	0.91	0.83	2.07	56888	3492	8	19	0	0	28480	logfile
✔	7BP3	30143	2024-09-23	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.003	0.85	0.0	0.04	18.31	0.00	2.473	13.17	3.59	6.7	93.3	0.0	-0.33	1.24	0.49	0.74	1.13	6080	788	2	0	0	0	0	logfile
✔	7T2E	25611	2024-09-23	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.19	0.00	2.592	1.92	1.57	0.3	99.7	0.0	0.56	0.13	0.36	0.86	4.71	2390	312	2	0	0	0	0	logfile
✔	6o0X	0583	2024-09-25	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	19.36	0.01	2.317	2.61	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.003	0.53	0.0	0.04	19.72	0.00	2.523	3.88	2.29	4.4	95.6	0.0	0.09	1.22	0.84	0.88	2.67	11257	1112	5	150	0	0	0	logfile
✔	6V0F	20996	2024-09-27	2019-11-18	2.96	3.40	—	3.3	0.010	1.33	0.0	0.07	10.49	0.01	2.433	4.35	0.34	1.1	98.9	0.0	-2.57	0.71	0.79	3.27	3.3	0.004	0.77	0.0	0.05	15.99	0.00	2.539	7.79	3.58	3.8	96.2	0.0	-1.10	2.02	0.67	0.78	3.28	15942	2106	6	0	0	0	0	logfile
✔	7UZV	26919	2024-09-24	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.003	0.59	0.0	0.04	18.92	0.00	2.391	4.45	2.84	2.1	97.7	0.2	1.02	0.28	0.61	0.85	3.79	9274	584	4	0	0	63	4592	logfile
✔	6XoS	22278	2024-09-24	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	2.95	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.76	0.0	0.04	14.53	0.00	2.473	7.40	0.70	2.1	97.9	0.0	1.44	0.99	0.89	0.85	1.78	7704	966	1	0	0	0	0	logfile
✔	6V0J	21000	2024-09-27	2019-11-18	3.78	3.93	—	3.8	0.006	0.88	0.0	0.05	10.19	0.01	2.373	5.04	0.00	5.8	94.0	0.3	-3.23	0.83	0.83	2.89	3.8	0.004	0.73	0.0	0.05	14.21	0.00	2.497	9.86	1.78	6.3	93.7	0.0	-1.72	4.21	0.83	0.83	2.54	15252	2010	6	0	0	0	0	logfile
✔	6V0E	20995	2024-09-27	2019-11-18	3.06	3.22	—	3.2	0.008	1.02	0.0	0.06	10.01	0.01	2.220	5.63	0.00	5.3	94.7	0.0	-3.15	0.78	0.82	3.32	3.2	0.004	0.67	0.0	0.05	14.89	0.00	2.528	8.45	2.29	6.0	94.0	0.0	-1.26	0.68	0.78	0.85	3.01	16602	2178	6	0	0	0	0	logfile
✔	7S9D	24933	2024-09-25	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.003	0.66	0.0	0.04	12.02	0.00	2.619	8.94	0.00	7.9	91.8	0.3	-0.79	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile
✔	7DYS	30924	2024-09-26	2021-01-22	3.18	3.98	—	3.7	0.008	0.92	0.0	0.05	10.27	0.01	2.320	3.06	0.62	4.3	95.7	0.0	-2.99	0.68	0.76	3.29	3.7	0.003	0.71	0.0	0.04	13.54	0.00	2.486	6.53	2.17	3.2	96.8	0.0	1.21	1.72	0.68	0.77	2.28	12065	1548	4	0	0	0	0	logfile
✔	7RYQ	24745	2024-09-23	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.05	14.03	0.01	2.393	13.97	0.00	5.8	94.2	0.0	0.03	1.21	0.85	0.76	—	4332	527	1	0	0	0	0	logfile
✔	7WJU	32548	2024-09-24	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	21.91	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	2.9	0.004	0.62	0.0	0.04	22.32	0.00	2.259	4.79	1.88	4.5	95.5	0.0	0.51	1.16	0.70	0.84	3.33	8322	607	5	158	0	0	0	logfile
✔	7N76	24221	2024-09-24	2021-06-09	2.9	3.57	2.96	3.3	0.005	0.64	0.0	0.07	12.16	0.00	2.074	5.80	0.00	3.3	96.7	0.0	0.22	0.70	0.83	3.50	3.3	0.003	0.57	0.0	0.04	13.86	0.00	2.615	4.42	0.70	1.5	98.5	0.0	2.22	1.13	0.68	0.83	2.18	7399	1036	2	0	0	3	0	logfile
✔	7N75	24220	2024-09-24	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.91	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.60	0.0	0.04	14.41	0.00	2.590	5.83	0.71	2.2	97.8	0.0	2.40	0.37	0.66	0.81	1.95	7381	1036	2	0	0	3	0	logfile
✔	6oSA	20181	2024-09-24	2019-05-01	3.0	3.37	—	3.3	0.008	1.08	0.0	0.06	11.09	0.01	2.210	4.42	0.00	3.5	96.5	0.0	-2.75	0.62	0.78	3.28	3.4	0.005	0.74	0.0	0.04	16.35	0.00	2.445	8.91	3.38	3.4	96.6	0.0	0.63	1.28	0.61	0.79	2.18	7338	937	5	0	0	0	0	logfile
✔	7KQE	22997	2024-09-28	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.004	0.59	0.0	0.04	14.21	0.00	2.377	2.65	0.52	4.7	95.3	0.0	-0.18	1.53	0.88	0.84	2.24	68370	4467	9	0	0	0	33744	logfile
✔	7o4H	12718	2024-09-26	2021-04-06	3.4	4.30	—	4.1	0.005	0.85	0.0	0.05	13.96	0.01	2.106	15.70	0.00	14.3	85.7	0.0	-2.48	0.73	0.77	1.27	4.0	0.003	0.75	0.0	0.04	15.85	0.00	2.459	8.26	1.87	9.7	90.3	0.0	-1.20	0.49	0.72	0.76	1.37	14195	1780	4	0	0	0	0	logfile
✔	6V9Z	21132	2024-09-25	2019-12-16	3.35	4.22	3.56	3.9	0.014	1.88	0.0	0.09	14.27	0.00	2.382	3.65	2.97	5.1	94.9	0.0	-2.85	0.74	0.80	1.47	3.9	0.002	0.56	0.0	0.04	15.45	0.00	2.583	5.25	1.37	2.1	97.9	0.0	2.20	1.67	0.77	0.86	1.48	11434	1472	4	0	0	0	0	logfile
✔	7LB6	23264	2024-09-23	2021-01-07	3.16	3.80	—	3.5	0.004	0.56	0.0	0.04	13.83	0.00	2.112	10.46	0.00	2.3	97.7	0.0	-1.06	0.90	0.87	2.63	3.5	0.014	0.83	0.0	0.05	14.76	0.01	2.527	10.43	3.27	5.0	95.0	0.0	0.26	1.00	0.91	0.90	2.81	47760	6276	24	0	0	0	0	logfile

• ← previous
• Page 2 of 505
• next →