Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PBA	17582	2024-09-29	2023-06-08	2.64	3.15	2.67	2.8	0.017	1.31	0.0	0.07	11.77	0.01	2.460	0.70	0.32	1.0	99.0	0.0	0.95	0.87	0.80	4.56	2.8	0.004	0.63	0.0	0.04	14.70	0.00	2.172	5.18	0.96	3.1	96.9	0.1	-0.26	1.22	0.87	0.83	3.76	22964	1444	2	0	0	0	11332	logfile
✔	7oP3	13012	2024-09-24	2021-05-28	3.5	3.77	—	3.7	0.004	0.78	0.0	0.05	14.58	0.01	2.278	5.95	0.00	4.8	95.2	0.0	-1.24	0.63	0.81	0.96	3.7	0.003	0.59	0.0	0.04	16.30	0.00	2.341	7.70	1.45	4.8	95.2	0.0	-0.31	0.37	0.62	0.82	0.54	8772	1100	2	0	1	0	0	logfile
✔	6oR5	9032	2024-09-25	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.004	0.70	0.0	0.04	10.42	0.00	2.477	1.35	0.00	19.2	80.8	0.0	-2.56	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	7N16	24114	2024-09-28	2021-05-27	3.2	3.17	—	3.5	0.008	1.18	0.0	0.06	18.87	0.01	2.027	4.59	0.86	5.7	94.3	0.0	-4.54	0.63	0.84	2.47	3.5	0.002	0.57	0.0	0.04	16.92	0.00	2.328	7.58	2.20	5.5	94.5	0.0	0.76	1.01	0.63	0.85	2.03	17357	2056	8	0	17	0	0	logfile
✔	6X97	22103	2024-09-28	2020-06-02	3.65	4.17	3.77	4.1	0.022	1.77	0.0	0.14	11.60	0.01	2.496	0.46	0.30	2.1	97.9	0.0	0.36	0.77	0.80	2.77	4.1	0.003	0.71	0.0	0.04	14.56	0.00	2.472	8.48	2.30	4.5	95.5	0.0	-0.12	0.85	0.77	0.81	2.42	18873	2319	30	0	60	0	0	logfile
✔	7KQB	22993	2024-09-27	2020-11-14	2.42	3.64	2.56	2.6	0.012	1.79	14.0	0.10	13.66	0.01	2.506	0.35	1.23	5.3	94.4	0.2	-1.06	0.79	0.62	3.08	2.6	0.003	0.58	0.0	0.04	13.89	0.00	2.281	2.83	0.53	4.1	95.9	0.0	-0.39	0.57	0.89	0.85	2.64	63309	4105	10	0	23	0	31094	logfile
✔	7TXT	26160	2024-09-26	2022-02-09	3.0	3.54	—	3.4	0.007	0.53	0.0	0.04	12.67	0.00	2.064	8.27	0.00	2.6	97.4	0.0	0.25	0.70	0.86	4.50	3.4	0.003	0.56	0.0	0.04	14.81	0.00	2.155	7.69	0.93	2.5	97.5	0.0	0.60	0.55	0.62	0.87	4.20	12111	772	4	0	1	0	6018	logfile
✔	8Bo2	16138	2024-09-26	2022-11-14	3.1	3.79	3.14	3.5	0.017	1.94	10.0	0.11	14.14	0.02	2.505	4.29	0.47	6.7	93.2	0.1	-0.67	0.59	0.53	2.30	3.5	0.003	0.71	0.0	0.04	15.86	0.00	2.470	11.19	1.41	4.9	94.9	0.2	-0.70	1.11	0.77	0.80	1.37	14037	1803	6	0	0	0	0	logfile
✔	7WN1	32619	2024-09-23	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.55	0.0	0.04	16.09	0.00	2.464	6.63	3.26	4.3	95.7	0.0	1.89	0.35	0.65	0.89	3.12	3901	493	3	0	1	0	0	logfile
✔	6MYY	9294	2024-09-28	2018-11-02	3.8	3.92	—	3.8	0.015	1.37	0.0	0.09	18.20	0.00	2.302	1.19	0.30	3.3	96.5	0.1	-0.23	0.76	0.80	1.97	3.8	0.003	0.69	0.0	0.05	12.54	0.00	2.503	6.31	1.44	3.6	96.4	0.0	0.48	1.51	0.77	0.81	2.09	20139	2307	54	0	156	0	0	logfile
✔	7M71	23707	2024-09-24	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	12.98	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.003	0.63	0.0	0.04	13.61	0.00	2.484	5.05	0.54	3.2	96.8	0.0	-0.33	1.33	0.59	0.90	3.85	6646	852	6	0	4	0	0	logfile
✔	7T6J	25716	2024-09-28	2021-12-14	3.2	3.40	—	3.4	0.005	1.09	2.0	0.06	14.92	0.01	2.340	3.85	0.05	3.2	96.7	0.2	-3.33	0.70	0.87	2.58	3.4	0.003	0.60	0.0	0.04	16.47	0.00	2.529	6.24	0.95	2.6	97.4	0.0	1.35	0.93	0.70	0.90	2.18	19412	2424	4	0	0	0	0	logfile
✔	7AG8	11776	2024-09-25	2020-09-21	2.68	3.30	2.85	3.2	0.005	0.65	0.0	0.04	13.13	0.00	2.220	6.49	0.37	4.2	95.7	0.1	-0.60	0.65	0.79	4.14	3.2	0.002	0.55	0.0	0.04	14.38	0.00	2.418	4.70	0.92	3.3	96.6	0.1	0.60	0.88	0.68	0.82	3.43	10922	1417	4	0	2	0	0	logfile
✔	7ZJG	14747	2024-09-28	2022-04-11	3.49	3.94	3.50	3.8	0.003	0.64	0.0	0.04	13.03	0.00	2.241	9.59	0.52	8.3	91.3	0.3	-0.33	0.65	0.75	1.88	3.8	0.003	0.67	0.0	0.04	15.29	0.00	2.508	9.69	1.88	8.6	91.2	0.2	0.14	0.56	0.65	0.77	1.37	19532	2396	4	0	0	0	0	logfile
✔	5TCP	8398	2024-09-29	2016-09-15	4.3	3.93	—	4.0	0.013	1.38	0.0	0.07	9.90	0.01	2.479	0.74	0.00	3.5	95.5	1.1	-0.87	0.77	0.79	—	4.0	0.005	0.67	0.0	0.04	12.84	0.00	2.494	4.88	0.00	4.1	95.9	0.0	1.24	0.86	0.81	0.85	—	72888	9072	48	0	0	0	0	logfile
✔	7SWW	25487	2024-09-23	2021-11-21	3.13	2.34	—	2.0	0.004	0.76	0.0	0.06	13.91	0.01	2.214	9.55	0.00	2.4	97.6	0.0	-0.48	0.58	0.70	2.57	2.0	0.004	0.65	0.0	0.04	15.00	0.00	2.515	7.71	4.46	4.6	95.4	0.0	-0.83	1.18	0.58	0.71	2.28	4172	511	6	0	8	0	0	logfile
✔	6PZZ	20541	2024-09-28	2019-08-01	3.6	4.09	3.67	3.9	0.024	1.89	0.0	0.11	12.06	0.01	2.021	1.66	0.00	2.8	97.0	0.2	0.57	0.80	0.85	4.00	3.9	0.005	0.82	0.0	0.05	13.81	0.00	2.477	8.74	2.17	5.9	94.0	0.2	-0.89	1.62	0.79	0.86	3.01	19772	2464	24	0	48	0	0	logfile
✔	7PMX	13543	2024-09-25	2021-09-03	3.5	3.85	3.50	3.7	0.003	0.54	0.0	0.04	10.52	0.00	2.134	6.34	2.13	3.2	96.8	0.0	0.60	0.61	0.80	1.97	3.7	0.004	0.59	0.0	0.04	12.94	0.00	2.299	5.09	1.77	4.3	95.7	0.0	0.87	0.98	0.61	0.80	1.66	10417	659	2	0	0	0	5253	logfile
✔	8FWK	29511	2024-09-25	2023-01-22	3.5	4.25	3.71	4.0	0.005	1.07	2.0	0.06	12.40	0.01	2.289	13.87	1.29	11.6	87.2	1.2	-4.60	0.66	0.72	0.53	4.1	0.003	0.73	0.0	0.04	15.62	0.00	2.557	9.30	2.67	10.2	89.7	0.2	-0.68	1.46	0.68	0.77	0.85	9462	1194	2	0	0	0	0	logfile
✔	8HSC	34993	2024-09-25	2022-12-19	3.22	3.75	3.39	3.7	0.003	0.70	0.0	0.05	18.31	0.00	2.161	7.83	0.47	5.4	94.6	0.0	-1.27	0.63	0.82	1.68	3.7	0.004	0.62	0.0	0.04	18.35	0.00	2.499	9.38	4.39	5.8	94.2	0.0	-0.68	0.32	0.63	0.82	1.89	10180	1345	7	0	0	0	0	logfile

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