Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YLX	33920	2024-09-27	2022-07-27	3.2	2.89	3.32	3.3	0.007	0.90	13.0	0.06	10.71	0.00	1.418	2.68	0.87	3.7	96.1	0.2	-3.82	0.74	0.72	0.82	3.3	0.003	0.78	0.0	0.04	16.42	0.00	1.688	10.06	3.19	4.3	95.7	0.0	0.10	3.15	0.82	0.83	1.20	67085	8693	47	0	46	14	0	logfile
✔	8G6G	29767	2024-09-26	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.005	0.59	0.0	0.04	28.23	0.00	2.203	4.10	2.03	1.6	98.4	0.0	2.79	0.17	0.88	0.89	2.44	12985	825	11	314	0	0	0	logfile
✔	7K39	22653	2024-09-29	2020-09-10	3.0	3.09	—	3.0	0.007	0.78	0.0	0.05	14.87	0.00	2.099	8.98	0.00	5.2	94.8	0.0	-0.61	0.78	0.85	3.24	3.0	0.003	0.67	0.0	0.05	15.56	0.00	2.375	5.66	1.71	4.5	95.5	0.0	-0.10	0.48	0.82	0.89	2.92	21561	2712	27	0	54	0	0	logfile
✔	8AP1	15556	2024-09-25	2022-08-09	3.47	3.19	3.47	3.4	0.005	0.76	0.0	0.05	18.36	0.00	2.023	5.94	0.27	3.9	96.1	0.0	0.17	0.66	0.82	3.13	3.4	0.003	0.56	0.0	0.04	19.53	0.00	2.008	4.84	2.37	3.8	96.2	0.0	0.73	0.33	0.66	0.84	2.59	11221	1257	6	54	3	0	0	logfile
✔	8DD3	27333	2024-09-28	2022-06-17	2.9	2.70	2.96	3.1	0.005	0.62	0.0	0.05	14.77	0.00	2.021	6.29	0.00	3.7	96.3	0.0	0.77	0.77	0.85	4.03	3.1	0.003	0.63	0.0	0.04	15.12	0.00	2.467	4.93	2.23	2.2	97.8	0.0	1.35	1.18	0.74	0.85	3.48	17459	2121	17	0	28	0	0	logfile
✔	7V21	31633	2024-09-26	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.003	0.51	0.0	0.04	14.95	0.00	2.566	5.34	0.93	2.4	97.6	0.0	1.44	0.41	0.73	0.88	3.11	11903	1505	4	0	0	0	0	logfile
✔	6NAV	0397	2024-09-28	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.32	0.00	2.480	7.00	0.00	5.1	94.9	0.0	-0.59	1.52	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	7USC	26732	2024-09-29	2022-04-25	3.0	3.26	2.98	3.1	0.007	0.62	0.0	0.04	14.12	0.00	2.130	6.55	0.00	3.0	97.0	0.0	1.36	0.90	0.87	2.78	3.1	0.004	0.57	0.0	0.04	16.42	0.00	2.429	3.24	0.70	1.4	98.6	0.0	2.78	0.51	0.91	0.90	2.31	21709	2673	5	0	0	0	0	logfile
✔	6PWX	20514	2024-09-30	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.21	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.008	0.77	0.0	0.04	26.64	0.01	2.013	20.44	0.00	5.0	95.0	0.0	-0.07	1.19	0.90	0.87	—	14411	1074	11	292	0	0	0	logfile
✔	6JB1	9787	2024-09-25	2019-01-25	3.3	3.82	—	3.7	0.008	1.06	0.0	0.58	23.68	0.00	2.034	10.49	6.21	4.9	95.1	0.0	-2.18	0.61	0.66	1.59	3.7	0.005	0.96	0.0	0.08	19.54	0.00	2.426	10.48	5.03	4.6	95.4	0.0	0.95	0.69	0.67	0.76	1.43	52028	6772	16	0	68	0	0	logfile
✔	7NJP	12402	2024-09-29	2021-02-17	2.84	2.89	—	2.7	0.003	0.50	0.0	0.04	14.73	0.00	2.035	6.55	0.00	2.3	97.7	0.0	1.92	0.86	0.86	3.44	2.7	0.006	0.58	0.0	0.04	15.71	0.00	1.696	5.20	0.29	3.3	96.7	0.0	1.26	0.91	0.86	0.88	3.36	74554	4929	31	0	11	16	37305	logfile
✔	7WJo	32547	2024-09-26	2022-01-07	3.2	3.40	—	3.3	0.006	0.55	0.0	0.04	11.70	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.003	0.54	0.0	0.04	14.81	0.00	2.526	4.06	2.39	5.4	94.6	0.0	1.61	0.52	0.67	0.84	1.46	12932	1602	4	0	2	0	0	logfile
✔	5YWD	6853	2024-09-25	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.77	0.0	0.04	13.35	0.00	1.927	12.30	0.00	3.9	96.1	0.0	1.17	1.81	0.65	0.77	—	8997	1154	2	0	4	0	0	logfile
✔	7RAN	24378	2024-09-24	2021-07-02	3.45	3.40	—	3.5	0.003	0.62	0.0	0.05	12.45	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.003	0.57	0.0	0.04	14.76	0.00	2.498	3.47	1.79	2.6	97.4	0.0	0.93	0.37	0.75	0.83	2.38	8523	1120	6	0	1	0	0	logfile
✔	7V1Y	31630	2024-09-26	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.002	0.55	4.0	0.04	16.14	0.00	2.358	3.44	1.42	3.8	96.2	0.0	1.72	0.56	0.68	0.88	3.09	12524	1588	8	0	0	0	0	logfile
✔	8HiA	34813	2024-09-24	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.3	0.004	0.74	0.0	0.05	14.73	0.01	2.306	25.00	4.76	4.8	95.2	0.0	-5.19	12.04	0.66	0.21	—	7200	460	20	0	0	0	3660	logfile
✔	6UVA	20906	2024-09-25	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.64	0.0	0.04	18.45	0.00	2.508	7.34	3.17	4.2	95.8	0.0	0.04	1.29	0.65	0.79	2.87	9561	1199	7	0	0	0	0	logfile
✔	7KY8	23071	2024-09-25	2020-12-07	3.85	3.91	—	3.9	0.005	0.74	0.0	0.05	15.27	0.00	2.208	13.05	0.00	8.4	91.6	0.0	-1.28	0.70	0.84	2.33	3.9	0.004	0.69	0.0	0.05	16.08	0.00	2.328	8.67	1.62	7.8	92.2	0.0	-0.96	0.35	0.69	0.84	2.16	10520	1274	8	0	19	0	0	logfile
✔	8DJB	27459	2024-09-27	2022-06-30	3.18	3.51	3.10	3.3	0.005	0.72	0.0	0.06	12.90	0.00	1.908	12.93	6.96	4.2	95.6	0.2	-0.69	0.82	0.81	1.93	3.3	0.002	0.62	0.0	0.04	15.45	0.00	2.536	6.17	1.36	3.2	96.8	0.0	0.95	1.05	0.87	0.90	2.00	16781	2156	9	0	1	0	0	logfile
✔	6VCD	21149	2024-09-24	2019-12-20	3.0	3.21	—	3.2	0.005	0.70	0.0	0.04	14.13	0.00	2.170	9.40	0.11	10.1	89.7	0.2	-4.83	0.73	0.82	3.84	3.2	0.004	0.68	0.0	0.04	16.36	0.00	2.519	7.55	2.34	8.3	91.6	0.1	-1.46	0.46	0.72	0.83	3.11	8082	1033	4	0	1	0	0	logfile

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