Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iRM	35679	2024-09-24	2023-03-19	2.6	2.91	2.63	2.9	0.007	0.68	0.0	0.04	13.13	0.00	2.101	7.26	0.00	3.6	96.4	0.0	0.86	0.67	0.89	4.19	2.8	0.002	0.46	0.0	0.04	14.52	0.00	2.441	21.47	1.52	3.1	96.9	0.0	2.58	1.25	0.64	0.89	3.70	8138	1080	8	2	4	2	8	logfile
✔	8T46	41021	2024-09-24	2023-06-08	3.6	3.90	3.43	3.8	0.003	0.63	0.0	0.04	16.79	0.01	2.278	4.95	0.28	2.1	97.8	0.1	1.31	0.66	0.80	1.19	3.8	0.002	0.51	0.0	0.04	17.31	0.00	2.440	4.68	4.76	1.6	98.4	0.0	2.88	1.92	0.69	0.82	1.22	7885	1113	2	0	0	0	0	logfile
✔	8UBG	42088	2024-09-29	2023-09-22	3.5	3.37	3.70	3.4	0.005	0.74	0.0	0.03	13.10	0.01	2.252	1.64	0.00	0.4	99.6	0.0	-2.55	0.48	0.72	1.79	3.4	0.002	0.47	0.0	0.03	16.13	0.00	2.179	4.67	0.89	1.5	98.5	0.0	5.86	0.86	0.49	0.72	1.19	72500	4520	20	0	0	0	37600	logfile
✔	8K66	36918	2024-09-24	2023-07-25	2.53	2.66	2.51	2.7	0.006	1.05	0.0	0.20	19.61	0.00	1.997	8.02	3.20	1.6	98.4	0.0	-0.42	0.77	0.89	4.68	2.7	0.002	0.52	0.0	0.04	15.62	0.00	2.275	5.37	1.15	2.2	97.8	0.0	2.63	1.15	0.71	0.89	4.97	7620	886	6	0	16	130	0	logfile
✔	8HAU	34609	2024-09-27	2022-10-26	3.02	3.24	3.04	3.3	0.006	0.62	8.0	0.05	17.46	0.01	1.876	23.57	0.46	2.0	98.0	0.0	0.97	0.58	0.65	0.40	3.3	0.002	0.57	0.0	0.04	17.24	0.00	2.523	4.67	3.22	2.5	97.5	0.0	-0.21	1.65	0.63	0.76	1.69	16157	2080	12	0	6	0	0	logfile
✔	8C9H	16510	2024-09-27	2023-01-22	3.2	3.51	3.35	3.6	0.005	0.59	0.0	0.04	12.20	0.00	2.324	4.83	0.44	3.9	96.1	0.0	2.63	0.70	0.88	2.95	3.6	0.002	0.53	0.0	0.04	14.00	0.01	2.638	4.77	1.76	4.0	96.0	0.0	2.86	0.30	0.69	0.89	2.22	15776	2024	16	0	8	0	0	logfile
✔	8J87	36062	2024-09-24	2023-05-01	3.42	4.18	3.44	3.5	0.002	0.54	0.0	0.04	10.98	0.00	2.196	7.33	0.00	3.7	96.3	0.0	-0.40	0.79	0.59	0.98	3.5	0.002	0.59	0.0	0.04	13.64	0.00	2.527	9.63	1.54	5.4	94.6	0.0	0.34	0.99	0.81	0.63	0.52	7846	954	2	0	0	0	0	logfile
✔	8RoY	19407	2024-09-24	2024-01-12	3.1	4.02	3.16	3.8	0.003	0.56	0.0	0.04	14.45	0.02	2.346	2.23	0.40	4.8	95.2	0.0	-1.39	0.78	0.81	3.13	3.8	0.002	0.59	0.0	0.04	14.85	0.00	2.461	4.08	3.08	4.3	95.7	0.0	-0.76	1.01	0.79	0.82	2.74	8294	1174	4	0	1	0	0	logfile
✔	8SGP	40463	2024-09-26	2023-04-12	2.69	3.37	2.71	3.2	0.004	0.51	0.0	0.04	11.58	0.00	2.171	4.08	1.33	1.8	98.2	0.0	2.13	0.82	0.80	5.29	3.2	0.002	0.47	0.0	0.04	13.86	0.00	2.599	5.32	1.58	2.1	97.9	0.0	2.22	0.47	0.80	0.90	4.65	12100	1540	8	0	4	0	0	logfile
✔	8X8Q	38156	2024-09-23	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.55	0.0	0.04	15.47	0.00	2.622	6.77	0.76	1.1	98.9	0.0	0.63	0.35	0.83	0.86	3.31	4949	622	3	0	1	0	0	logfile
✔	8R3Z	18878	2024-09-24	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.002	0.56	0.0	0.04	17.72	0.00	2.034	11.54	2.71	2.3	97.7	0.0	0.47	0.51	0.82	0.77	1.68	6389	755	3	6	1	0	0	logfile
✔	8HTi	35010	2024-09-24	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.002	0.52	0.0	0.04	16.39	0.00	2.569	3.63	2.36	2.3	97.7	0.0	1.07	0.39	0.78	0.84	2.10	7390	962	6	0	1	0	0	logfile
✔	8PHF	17660	2024-09-24	2023-06-19	3.6	3.88	3.58	4.0	0.004	0.65	0.0	0.04	16.42	0.00	2.134	11.77	0.11	4.6	95.4	0.0	0.67	0.67	0.71	1.88	4.0	0.002	0.53	0.0	0.04	17.11	0.00	2.570	7.38	1.52	2.4	97.6	0.0	1.75	0.53	0.65	0.70	1.48	8640	1094	4	0	2	0	0	logfile
✔	8EE7	28048	2024-09-28	2022-09-06	2.72	2.91	2.76	2.9	0.003	0.52	1.0	0.04	14.76	0.00	1.968	1.75	0.00	3.9	96.1	0.0	0.68	0.61	0.81	3.18	2.9	0.002	0.51	2.0	0.04	16.51	0.00	2.446	0.77	0.91	3.6	96.4	0.0	1.01	0.29	0.59	0.80	3.10	18094	1135	4	0	1	0	8906	logfile
✔	8HWE	35055	2024-09-27	2022-12-29	3.3	3.47	3.28	3.5	0.003	0.61	0.0	0.04	17.84	0.00	1.956	10.09	0.62	8.5	91.5	0.0	-1.52	0.72	0.80	1.70	3.5	0.002	0.59	0.0	0.04	17.45	0.00	2.029	7.13	2.55	8.2	91.8	0.0	-0.92	0.30	0.71	0.80	1.46	17247	2112	12	0	11	0	0	logfile
✔	8WC7	37433	2024-09-24	2023-09-11	3.1	3.32	3.11	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.002	0.54	0.0	0.04	15.64	0.00	2.414	2.89	1.03	4.1	95.9	0.0	0.22	0.93	0.71	0.86	2.89	8532	1122	6	0	1	0	0	logfile
✔	8iER	35391	2024-09-27	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.58	0.0	0.04	12.94	0.00	2.424	6.21	0.00	9.5	90.3	0.2	-0.89	1.27	0.52	0.55	—	15257	967	2	0	1	0	7758	logfile
✔	8K69	36919	2024-09-24	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.002	0.55	0.0	0.04	15.82	0.00	2.289	3.96	1.78	2.9	97.1	0.0	2.61	1.12	0.74	0.89	5.36	7744	916	6	0	18	126	0	logfile
✔	8iYW	35831	2024-09-24	2023-04-06	3.45	3.86	3.54	3.8	0.005	0.84	0.0	0.05	12.73	0.01	2.252	5.71	1.45	3.3	96.7	0.0	0.09	0.68	0.79	3.77	3.9	0.002	0.61	0.0	0.04	13.93	0.00	2.461	3.74	2.32	2.6	97.4	0.0	0.95	0.38	0.63	0.75	3.10	7849	1118	6	0	1	0	0	logfile
✔	8Gi0	40056	2024-09-26	2023-03-13	3.5	3.02	3.04	3.0	0.004	0.70	0.0	0.05	14.69	0.01	2.170	3.36	1.14	3.6	96.4	0.0	-0.53	0.65	0.81	3.76	3.1	0.002	0.56	0.0	0.04	15.30	0.00	2.506	2.63	1.97	3.7	96.3	0.0	0.80	0.38	0.71	0.82	2.69	12189	1625	6	0	0	0	0	logfile

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