Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PLo	20370	2024-09-26	2019-07-01	3.3	3.50	—	3.5	0.007	1.06	0.0	0.06	12.90	0.01	2.033	6.04	0.00	4.6	95.4	0.0	-5.29	0.68	0.83	3.92	3.5	0.002	0.74	0.0	0.04	13.87	0.00	2.568	8.97	2.88	5.1	94.9	0.0	-1.28	0.99	0.64	0.84	3.57	14165	1730	15	0	20	0	0	logfile
✔	7CX2	30489	2024-09-24	2020-09-01	2.8	3.21	—	3.1	0.004	0.71	0.0	0.05	13.64	0.01	1.994	8.54	0.12	3.7	96.3	0.0	-2.13	0.69	0.82	3.34	3.1	0.003	0.62	0.0	0.04	16.01	0.00	2.493	4.65	2.03	3.0	97.0	0.0	0.81	1.15	0.62	0.79	2.95	7930	1020	6	0	1	1	0	logfile
✔	7B00	11952	2024-09-24	2020-11-17	3.98	3.73	—	4.0	0.006	0.97	0.0	0.08	17.03	0.01	1.838	5.81	0.39	9.5	90.5	0.0	-6.20	0.59	0.79	1.66	4.0	0.004	0.75	0.0	0.04	16.38	0.00	2.427	7.64	4.12	8.1	91.9	0.0	-2.53	0.57	0.64	0.80	1.34	7389	926	7	0	9	0	0	logfile
✔	7LJD	23391	2024-09-24	2021-01-28	3.2	3.31	—	3.3	0.004	0.85	0.0	0.06	8.67	0.01	2.294	3.69	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	3.3	0.002	0.58	0.0	0.04	13.15	0.00	2.487	5.51	1.78	2.8	97.2	0.0	1.10	0.71	0.62	0.79	1.90	8518	1046	6	0	11	0	0	logfile
✔	7BV2	30210	2024-09-24	2020-04-09	2.5	2.82	—	2.8	0.005	0.74	0.0	0.05	15.37	0.00	1.942	5.42	0.00	1.3	98.7	0.0	0.03	0.77	0.83	4.56	2.8	0.002	0.53	0.0	0.04	16.39	0.00	2.262	5.07	1.02	1.4	98.6	0.0	0.99	1.11	0.68	0.81	3.54	8630	1011	8	25	6	5	0	logfile
✔	7EZK	31388	2024-09-24	2021-06-01	3.1	2.25	—	2.1	0.011	1.04	0.0	0.06	13.27	0.01	2.206	4.27	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.003	0.64	0.0	0.04	16.16	0.00	2.593	9.10	2.86	1.8	98.2	0.0	0.96	1.61	0.74	0.78	2.75	7196	922	5	0	0	0	0	logfile
✔	6TNG	10532	2024-09-24	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.82	0.0	0.00	6.03	0.00	2.495	2.12	0.00	19.3	80.6	0.1	-2.96	0.38	0.76	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	6PPF	20435	2024-09-28	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	25.55	0.00	1.152	14.99	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.006	0.78	0.0	0.04	25.00	0.01	1.973	8.77	5.58	9.6	90.4	0.0	-2.91	1.24	0.82	0.83	1.66	71835	2101	22	2583	0	13	0	logfile
✔	7NL0	12453	2024-09-25	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.74	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.60	0.0	0.03	29.61	0.00	2.505	9.74	1.91	3.1	96.9	0.0	2.58	0.28	0.77	0.81	2.99	11363	755	10	262	0	0	0	logfile
✔	8iD8	35359	2024-09-24	2023-02-12	3.0	3.25	3.12	3.3	0.005	0.64	0.0	0.04	13.41	0.00	1.393	8.92	0.33	3.3	96.7	0.0	-0.43	0.67	0.78	2.54	3.3	0.002	0.58	0.0	0.04	15.56	0.00	2.366	4.87	1.55	2.9	97.1	0.0	0.59	1.10	0.61	0.78	2.25	8635	1137	6	0	1	0	0	logfile
✔	6SPC	10281	2024-09-24	2019-09-01	2.95	3.03	—	3.0	0.018	1.43	1.0	0.07	25.78	0.01	1.399	13.25	9.17	14.6	83.9	1.5	-5.64	0.72	0.74	2.15	3.0	0.010	0.90	0.0	0.04	25.15	0.01	1.718	11.88	4.18	12.5	87.4	0.1	-2.78	0.57	0.74	0.78	1.56	50569	2307	21	1519	0	0	0	logfile
✔	7F55	31458	2024-09-24	2021-06-21	3.1	3.51	—	3.5	0.004	0.90	0.0	0.05	11.82	0.01	1.246	8.07	0.34	1.9	98.0	0.1	1.13	0.55	0.66	1.71	3.5	0.004	0.66	0.0	0.04	15.65	0.00	2.388	7.94	4.75	3.0	97.0	0.0	1.34	2.21	0.58	0.71	1.71	8088	1027	8	0	2	2	0	logfile
✔	8ASW	15623	2024-09-30	2022-08-21	3.96	3.82	4.00	3.5	0.005	0.75	0.0	0.04	19.81	0.00	2.061	19.48	0.71	10.5	89.2	0.2	-2.15	0.87	0.78	1.38	3.5	0.002	0.63	0.0	0.04	19.60	0.00	2.509	11.14	3.06	7.5	92.3	0.2	-1.62	0.37	0.87	0.77	1.09	24781	2897	6	73	2	0	0	logfile
✔	6iAC	4435	2024-09-24	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.003	0.89	0.0	0.05	16.38	0.00	2.451	9.90	5.87	8.5	91.5	0.0	-0.66	0.92	0.26	0.77	1.33	8210	1057	11	0	0	0	0	logfile
✔	7CX4	30491	2024-09-24	2020-09-01	2.9	3.15	—	3.1	0.004	0.64	0.0	0.05	12.92	0.00	2.032	8.05	0.00	3.5	96.5	0.0	-1.78	0.66	0.80	3.58	3.1	0.003	0.61	0.0	0.04	16.20	0.00	2.542	4.15	2.03	2.9	97.1	0.0	0.72	1.14	0.66	0.82	2.77	7926	1020	6	0	1	0	0	logfile
✔	7D77	30603	2024-09-25	2020-10-03	2.9	3.25	—	3.2	0.008	0.78	0.0	0.06	13.72	0.00	2.107	8.48	0.21	3.7	96.3	0.0	-2.58	0.62	0.80	4.03	3.2	0.004	0.62	0.0	0.04	15.29	0.00	2.456	4.84	2.15	3.3	96.7	0.0	0.23	0.37	0.59	0.79	3.34	8785	1105	7	0	7	1	0	logfile
✔	6WVJ	21920	2024-09-29	2020-05-06	3.36	3.59	—	3.4	0.005	0.75	0.0	0.05	17.45	0.00	2.079	12.04	5.36	6.7	93.1	0.1	-2.98	0.85	0.83	2.33	3.4	0.004	0.71	0.0	0.04	17.88	0.00	2.017	8.75	4.67	4.2	95.7	0.1	-0.80	0.42	0.85	0.84	1.77	22367	2802	9	37	3	0	0	logfile
✔	6C9i	7436	2024-09-29	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.003	0.43	0.0	0.04	15.15	0.00	2.594	3.37	0.69	0.0	100.0	0.0	3.78	2.43	0.71	0.89	3.63	23700	3087	24	0	0	0	0	logfile
✔	6X0U	21984	2024-09-23	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.68	0.0	0.03	17.96	0.00	2.555	6.38	2.63	3.7	96.3	0.0	1.12	0.78	0.27	0.78	2.63	3091	398	4	0	0	0	0	logfile
✔	7V02	26927	2024-09-28	2022-05-09	4.97	8.16	5.87	4.6	0.006	0.93	0.0	0.06	14.12	0.00	2.048	13.24	0.65	4.8	95.1	0.0	-1.12	0.83	0.64	—	4.7	0.003	0.65	0.0	0.04	14.34	0.00	2.373	15.95	0.00	3.5	96.5	0.0	-0.27	1.08	0.91	0.81	—	17417	2070	9	29	0	0	0	logfile

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