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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6HJQ | 0236 | 2024-09-29 | 2018-09-04 | 4.1 | 4.38 | 4.03 | 4.1 | 0.006 | 0.94 | 0.0 | 0.06 | 12.72 | 0.01 | 1.406 | 4.81 | 0.13 | 5.6 | 94.3 | 0.1 | -3.06 | 0.83 | 0.87 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 11.35 | 0.00 | 2.505 | 7.49 | 0.00 | 4.8 | 95.2 | 0.0 | -0.27 | 1.65 | 0.83 | 0.87 | — | 22530 | 2871 | 27 | 0 | 42 | 0 | 0 | logfile |
✔ | 7T9i | 25758 | 2024-09-29 | 2021-12-19 | 2.9 | 2.43 | — | 1.9 | 0.005 | 0.91 | 1.0 | 0.05 | 12.78 | 0.01 | 2.016 | 3.30 | 0.62 | 3.6 | 96.4 | 0.0 | -0.16 | 0.69 | 0.63 | 2.32 | 1.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.97 | 0.00 | 2.310 | 7.36 | 2.58 | 6.4 | 93.6 | 0.0 | -0.62 | 1.11 | 0.74 | 0.72 | 2.59 | 23529 | 1532 | 11 | 0 | 8 | 0 | 11557 | logfile |
✔ | 6ZBB | 11149 | 2024-09-29 | 2020-06-08 | 3.61 | 3.80 | 3.52 | 3.7 | 0.008 | 1.03 | 0.0 | 0.04 | 17.26 | 0.00 | 1.960 | 16.56 | 0.00 | 6.1 | 93.9 | 0.0 | -0.21 | 0.64 | 0.79 | 1.49 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 16.74 | 0.00 | 2.175 | 12.29 | 2.40 | 2.6 | 97.4 | 0.0 | 1.50 | 0.53 | 0.64 | 0.78 | 1.02 | 21082 | 1328 | 20 | 0 | 5 | 0 | 10592 | logfile |
✔ | 7YA0 | 33698 | 2024-09-25 | 2022-06-26 | 3.1 | 3.62 | 3.66 | 3.3 | 0.003 | 0.68 | 0.0 | 0.05 | 14.04 | 0.00 | 2.001 | 9.13 | 0.19 | 5.5 | 94.2 | 0.3 | -0.72 | 0.75 | 0.78 | 1.83 | 3.3 | 0.009 | 0.71 | 0.0 | 0.05 | 15.15 | 0.01 | 2.109 | 8.56 | 0.86 | 5.3 | 94.6 | 0.1 | -0.86 | 0.45 | 0.75 | 0.81 | 1.76 | 39996 | 4917 | 27 | 0 | 66 | 0 | 0 | logfile |
✔ | 8CHF | 16660 | 2024-09-26 | 2023-02-07 | 4.25 | 2.79 | 4.08 | 1.9 | 0.006 | 0.81 | 0.0 | 0.05 | 14.54 | 0.00 | 2.136 | 23.74 | 0.00 | 4.9 | 95.1 | 0.0 | -0.37 | 0.69 | 0.68 | — | 1.9 | 0.003 | 0.75 | 0.0 | 0.05 | 13.70 | 0.00 | 2.500 | 17.94 | 0.00 | 4.6 | 95.4 | 0.0 | -0.66 | 1.49 | 0.67 | 0.69 | — | 12628 | 1572 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HJR | 0237 | 2024-09-26 | 2018-09-04 | 4.2 | 4.57 | 4.24 | 4.3 | 0.009 | 1.13 | 0.0 | 0.07 | 13.66 | 0.01 | 2.200 | 6.58 | 0.70 | 10.6 | 89.2 | 0.2 | -3.38 | 0.84 | 0.88 | — | 4.3 | 0.003 | 0.65 | 0.0 | 0.04 | 12.17 | 0.00 | 2.372 | 6.91 | 0.00 | 7.3 | 92.5 | 0.1 | -0.96 | 0.59 | 0.83 | 0.87 | — | 12579 | 1578 | 19 | 0 | 31 | 0 | 0 | logfile |
✔ | 6YY0 | 11001 | 2024-09-26 | 2020-05-04 | 3.23 | 3.34 | 3.07 | 3.3 | 0.006 | 0.68 | 0.0 | 0.04 | 15.44 | 0.00 | 1.847 | 8.18 | 0.00 | 8.4 | 91.6 | 0.0 | -0.84 | 0.72 | 0.84 | 2.97 | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 16.24 | 0.00 | 1.778 | 4.21 | 0.59 | 5.4 | 94.6 | 0.0 | -0.05 | 0.33 | 0.73 | 0.86 | 2.63 | 61162 | 3926 | 25 | 0 | 11 | 17 | 30826 | logfile |
✔ | 6oEG | 20020 | 2024-09-28 | 2019-03-27 | 3.8 | 3.93 | — | 3.9 | 0.008 | 1.12 | 0.0 | 0.06 | 13.46 | 0.01 | 2.370 | 5.57 | 5.56 | 8.1 | 91.9 | 0.0 | -4.92 | 0.42 | 0.79 | 3.01 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 15.66 | 0.00 | 2.393 | 8.48 | 3.42 | 8.1 | 91.9 | 0.0 | -1.72 | 0.81 | 0.43 | 0.79 | 2.38 | 18564 | 2268 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8B | 10117 | 2024-09-26 | 2019-07-09 | 2.41 | 3.08 | 2.65 | 3.0 | 0.006 | 0.79 | 0.0 | 0.05 | 15.09 | 0.00 | 1.698 | 17.72 | 0.19 | 15.0 | 84.6 | 0.4 | -4.57 | 0.72 | 0.78 | 2.94 | 3.0 | 0.004 | 0.83 | 0.0 | 0.05 | 17.34 | 0.00 | 2.140 | 12.69 | 2.69 | 12.1 | 87.8 | 0.1 | -2.72 | 1.05 | 0.67 | 0.84 | 2.40 | 62151 | 7479 | 36 | 93 | 6 | 0 | 0 | logfile |
✔ | 7KoD | 22972 | 2024-09-27 | 2020-11-08 | 1.655 | 2.30 | — | 1.9 | 0.001 | 0.33 | 0.0 | 0.03 | 8.49 | 0.00 | 2.288 | 0.80 | 0.00 | 1.1 | 98.9 | 0.0 | 6.14 | 0.91 | 0.91 | 8.16 | 1.9 | 0.004 | 0.50 | 0.0 | 0.03 | 13.79 | 0.00 | 2.412 | 1.44 | 0.36 | 0.6 | 99.4 | 0.0 | 5.22 | 0.82 | 0.87 | 0.93 | 7.98 | 68186 | 4128 | 48 | 0 | 0 | 1727 | 32643 | logfile |
✔ | 6oDi | 20020 | 2024-09-29 | 2019-03-26 | 3.8 | 3.96 | — | 3.9 | 0.008 | 0.98 | 0.0 | 0.07 | 14.95 | 0.01 | 2.406 | 7.54 | 4.19 | 9.8 | 90.2 | 0.0 | -4.06 | 0.47 | 0.83 | 1.38 | 3.9 | 0.003 | 0.76 | 0.0 | 0.05 | 15.91 | 0.00 | 2.525 | 10.79 | 4.66 | 10.5 | 89.5 | 0.0 | -2.71 | 1.77 | 0.47 | 0.83 | 1.42 | 20902 | 2772 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SH8 | 10196 | 2024-09-27 | 2019-08-06 | 3.14 | 3.59 | 3.26 | 3.4 | 0.007 | 0.74 | 0.0 | 0.05 | 15.45 | 0.00 | 1.970 | 18.05 | 0.09 | 12.5 | 87.3 | 0.2 | -4.90 | 0.74 | 0.76 | 2.41 | 3.5 | 0.003 | 0.75 | 0.0 | 0.05 | 16.97 | 0.00 | 2.161 | 12.44 | 2.62 | 10.0 | 90.0 | 0.0 | -2.70 | 0.68 | 0.70 | 0.82 | 2.08 | 67477 | 8181 | 40 | 80 | 6 | 0 | 0 | logfile |
✔ | 7LFH | 23302 | 2024-09-30 | 2021-01-17 | 4.2 | 3.38 | — | 4.1 | 0.004 | 0.95 | 12.0 | 0.05 | 13.99 | 0.01 | 2.078 | 29.03 | 0.00 | 13.1 | 86.8 | 0.1 | -2.88 | 0.61 | 0.49 | — | 4.1 | 0.003 | 0.88 | 0.0 | 0.05 | 14.12 | 0.00 | 2.370 | 19.89 | 0.05 | 11.0 | 89.0 | 0.0 | -2.51 | 1.03 | 0.65 | 0.66 | — | 76884 | 9672 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2024-09-27 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.20 | 0.0 | 0.05 | 5.38 | 0.00 | 2.405 | 1.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 6ZG7 | 11195 | 2024-09-27 | 2020-06-18 | 3.49 | 3.18 | 3.39 | 3.4 | 0.006 | 0.66 | 0.0 | 0.04 | 14.31 | 0.00 | 2.002 | 10.29 | 0.00 | 4.7 | 95.3 | 0.0 | -0.05 | 0.54 | 0.78 | 2.53 | 3.4 | 0.004 | 0.55 | 0.0 | 0.04 | 15.89 | 0.00 | 2.379 | 7.12 | 2.47 | 3.2 | 96.8 | 0.0 | 1.17 | 0.44 | 0.55 | 0.80 | 2.14 | 15739 | 1048 | 11 | 0 | 0 | 0 | 8004 | logfile |
✔ | 6SHB | 10197 | 2024-09-27 | 2019-08-06 | 3.07 | 3.59 | 3.24 | 3.4 | 0.009 | 0.87 | 0.0 | 0.05 | 16.24 | 0.00 | 1.963 | 21.45 | 0.48 | 17.2 | 82.4 | 0.4 | -5.08 | 0.74 | 0.73 | 2.65 | 3.4 | 0.003 | 0.79 | 0.0 | 0.05 | 17.38 | 0.00 | 2.076 | 12.79 | 3.02 | 11.6 | 88.4 | 0.0 | -2.96 | 1.09 | 0.73 | 0.85 | 2.27 | 67700 | 8179 | 40 | 92 | 6 | 0 | 0 | logfile |
✔ | 6Yo0 | 10862 | 2024-09-25 | 2020-04-14 | 2.9 | 3.37 | 2.94 | 3.1 | 0.009 | 0.75 | 0.0 | 0.04 | 9.97 | 0.00 | 1.889 | 11.21 | 0.27 | 3.7 | 96.3 | 0.0 | -0.60 | 0.84 | 0.87 | 3.83 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 13.58 | 0.00 | 1.821 | 5.30 | 0.57 | 4.4 | 95.6 | 0.0 | 0.69 | 0.81 | 0.84 | 0.89 | 3.08 | 55780 | 3598 | 17 | 0 | 10 | 0 | 28102 | logfile |
✔ | 8HAo | 34598 | 2024-09-28 | 2022-10-26 | 3.76 | 3.06 | 3.49 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.90 | 0.00 | 1.785 | 5.73 | 0.40 | 2.9 | 96.9 | 0.2 | 1.91 | 0.58 | 0.52 | -0.03 | 3.8 | 0.004 | 0.87 | 0.0 | 0.05 | 17.59 | 0.00 | 2.369 | 14.68 | 4.32 | 4.4 | 95.6 | 0.0 | 0.40 | 1.24 | 0.64 | 0.69 | 0.90 | 18479 | 2314 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oEF | 20020 | 2024-09-24 | 2019-03-27 | 3.8 | 3.98 | — | 3.8 | 0.007 | 1.67 | 0.0 | 0.07 | 11.76 | 0.01 | 2.376 | 3.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.47 | 0.78 | — | 3.8 | 0.006 | 1.19 | 0.0 | 0.05 | 5.93 | 0.00 | 2.354 | 3.26 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.49 | 0.80 | — | 51240 | 0 | 14 | 0 | 10248 | 0 | 0 | logfile |
✔ | 6WC9 | 21603 | 2024-09-26 | 2020-03-30 | 2.64 | 2.43 | — | 2.6 | 0.006 | 0.54 | 0.0 | 0.04 | 15.75 | 0.00 | 1.949 | 3.96 | 2.10 | 3.9 | 96.1 | 0.0 | -0.42 | 0.53 | 0.77 | 3.24 | 2.6 | 0.003 | 0.54 | 0.0 | 0.04 | 17.30 | 0.00 | 2.459 | 2.76 | 3.07 | 1.7 | 98.3 | 0.0 | 2.63 | 0.74 | 0.64 | 0.82 | 3.51 | 11713 | 734 | 6 | 0 | 7 | 106 | 5904 | logfile |