Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JMQ	9849	2024-09-25	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	14.03	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.03	0.71	0.79	2.84	3.5	0.003	0.70	0.0	0.04	14.81	0.00	2.510	7.13	3.17	3.8	96.1	0.1	-1.20	1.44	0.75	0.83	2.64	9950	1223	12	0	74	0	0	logfile
✔	7NS4	12560	2024-09-23	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.004	0.65	0.0	0.04	16.03	0.00	2.386	7.41	2.38	8.0	92.0	0.0	0.20	0.32	0.74	0.83	2.16	5465	698	4	0	2	0	0	logfile
✔	7U6E	26364	2024-09-24	2022-03-03	3.0	3.18	2.99	3.1	0.008	0.91	0.0	0.06	14.19	0.01	2.171	5.91	1.82	4.6	95.3	0.1	-2.19	0.79	0.74	2.42	3.1	0.004	0.76	0.0	0.05	16.57	0.00	2.469	12.07	2.38	4.3	95.7	0.0	-1.87	1.66	0.81	0.77	2.27	8004	974	9	0	10	0	0	logfile
✔	6M4D	30076	2024-09-25	2020-03-06	4.4	4.58	—	4.3	0.007	0.84	0.0	0.05	31.37	0.01	2.074	25.84	0.71	6.6	92.8	0.6	-2.81	0.88	0.82	—	4.3	0.004	0.70	0.0	0.04	30.41	0.01	2.121	17.44	0.00	2.6	96.8	0.6	0.53	1.43	0.88	0.82	—	10497	682	10	250	0	0	0	logfile
✔	7WZ3	32903	2024-09-26	2022-02-16	4.1	3.52	—	3.4	0.003	0.58	0.0	0.04	11.64	0.00	2.022	2.41	0.06	2.8	97.2	0.0	-4.27	0.62	0.51	—	3.4	0.003	0.69	0.0	0.04	13.29	0.00	2.146	11.46	0.02	3.8	96.2	0.0	-0.47	3.38	0.63	0.55	—	58551	7652	22	0	6	0	0	logfile
✔	7SMM	25202	2024-09-28	2021-10-26	2.5	2.86	—	2.7	0.006	0.78	0.0	0.05	16.09	0.00	2.099	3.47	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.003	0.51	0.0	0.04	15.02	0.00	2.460	4.29	1.12	2.6	97.4	0.0	1.88	0.31	0.81	0.88	3.96	17256	2030	20	0	39	63	0	logfile
✔	7Z7i	14533	2024-09-27	2022-03-15	3.5	4.18	3.47	3.8	0.014	1.08	0.0	0.07	14.64	0.01	1.952	3.82	0.00	5.7	94.3	0.0	-2.47	0.75	0.81	3.12	3.8	0.003	0.70	0.0	0.04	15.45	0.00	1.943	2.83	1.41	3.4	96.6	0.0	-0.06	1.13	0.75	0.83	2.34	14815	1855	10	0	15	0	0	logfile
✔	6UES	20755	2024-09-23	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.47	0.01	1.929	30.44	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7K5K	22682	2024-09-30	2020-09-17	2.66	2.76	2.81	2.7	0.007	0.69	0.0	0.05	15.27	0.00	1.722	6.95	4.06	10.2	89.7	0.0	-3.21	0.79	0.85	4.74	2.7	0.005	0.63	0.0	0.05	15.91	0.00	2.010	5.48	2.34	7.7	92.3	0.0	-0.64	1.10	0.81	0.87	4.08	24224	3270	12	0	18	0	0	logfile
✔	7D10	30542	2024-09-24	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	14.26	0.00	2.558	6.42	3.20	6.2	93.8	0.0	-1.42	1.20	0.63	0.82	2.67	6424	892	4	0	4	0	0	logfile
✔	7ZR8	14886	2024-09-23	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.42	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	3.8	0.004	0.60	0.0	0.04	13.18	0.00	2.324	7.84	4.21	5.4	94.6	0.0	-1.04	0.49	0.72	0.82	2.00	3693	471	4	0	1	0	0	logfile
✔	6N7N	0359	2024-09-26	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.003	0.64	0.0	0.04	16.81	0.00	1.886	9.11	1.92	5.2	94.8	0.0	-1.13	1.68	0.69	0.70	1.59	12854	1608	12	15	10	0	0	logfile
✔	8USP	42510	2024-09-24	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.64	0.0	0.04	16.23	0.00	2.373	8.08	1.70	3.1	96.9	0.0	1.34	0.45	0.83	0.83	1.05	47406	5892	6	0	0	0	0	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	8APL	15574	2024-09-29	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.003	0.65	0.0	0.04	11.35	0.00	2.297	14.75	0.12	2.5	97.5	0.0	-0.56	1.53	0.77	0.73	—	21888	2694	6	0	0	0	0	logfile
✔	8A5o	15179	2024-09-26	2022-06-15	3.2	3.27	3.09	3.2	0.016	1.87	2.0	0.10	14.34	0.01	1.981	1.08	0.72	3.8	96.0	0.2	-1.14	0.70	0.80	3.54	3.2	0.004	0.58	0.0	0.04	16.38	0.00	2.219	4.24	1.87	2.2	97.7	0.1	1.27	1.61	0.81	0.86	2.37	12571	1555	8	0	6	0	0	logfile
✔	6YW6	10959	2024-09-26	2020-04-29	4.2	4.50	—	4.3	0.007	1.15	2.0	0.07	11.08	0.01	2.164	11.25	0.73	6.2	93.5	0.3	-4.53	0.85	0.78	—	4.3	0.004	0.71	0.0	0.05	12.13	0.00	2.342	13.06	0.00	5.6	94.4	0.0	-1.43	2.50	0.86	0.78	—	13823	1722	9	0	2	0	0	logfile
✔	6W18	21503	2024-09-26	2020-03-03	4.2	4.20	4.18	4.2	0.002	0.41	0.0	0.04	11.72	0.00	2.196	4.75	0.00	3.0	97.0	0.0	-3.43	0.71	0.62	—	4.2	0.003	0.73	0.0	0.04	12.85	0.00	2.382	6.54	0.09	7.2	92.8	0.0	-1.43	0.94	0.76	0.71	—	13151	1837	9	0	3	0	0	logfile
✔	6BoB	7123	2024-09-28	2017-11-18	3.9	3.98	—	3.9	0.007	1.20	0.0	0.06	11.84	0.01	2.259	7.24	0.76	11.1	88.5	0.3	-4.96	0.58	0.65	1.68	3.9	0.003	0.83	0.0	0.04	15.95	0.00	2.463	9.58	2.68	7.1	92.9	0.0	-1.04	0.94	0.73	0.79	1.80	19340	2412	4	0	0	0	0	logfile
✔	6ZB4	11144	2024-09-30	2020-06-06	3.03	3.12	3.02	3.1	0.007	0.69	0.0	0.05	16.16	0.01	1.814	4.85	3.84	8.2	91.7	0.1	-4.11	0.75	0.83	3.79	3.1	0.004	0.64	0.0	0.05	16.19	0.00	2.326	2.57	3.25	7.6	92.4	0.0	-1.54	1.86	0.76	0.86	3.62	24841	3133	7	0	30	0	0	logfile

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