Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DZY	30921	2024-09-28	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.89	0.0	0.00	5.59	0.00	2.061	1.34	0.00	12.1	87.8	0.1	-3.07	2.19	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	8E2J	27838	2024-09-24	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	6YW7	10960	2024-09-23	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.98	0.0	0.02	6.48	0.00	2.560	9.51	0.00	11.3	88.6	0.2	-3.41	5.70	0.81	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	8YBJ	39119	2024-09-26	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8F53	28859	2024-09-24	2022-11-11	2.93	3.13	2.94	3.1	0.002	0.43	0.0	0.03	11.82	0.00	2.361	1.10	0.00	0.6	99.4	0.0	1.20	0.69	0.77	2.64	3.1	0.004	0.55	0.0	0.03	16.22	0.00	2.366	4.97	4.32	0.6	99.4	0.0	2.92	0.76	0.62	0.82	2.62	51060	3240	60	0	0	0	26460	logfile
✔	8Soi	40658	2024-09-29	2023-04-28	4.2	3.78	—	3.6	0.003	0.60	0.0	0.04	15.47	0.00	2.090	9.52	0.09	3.2	96.7	0.1	1.61	0.66	0.64	—	3.6	0.003	0.55	0.0	0.03	14.27	0.00	2.250	7.10	0.00	3.5	96.4	0.2	1.88	0.53	0.66	0.62	—	20708	1276	4	0	0	0	10465	logfile
✔	7Q65	13852	2024-09-23	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.67	0.0	0.03	13.35	0.00	2.571	10.69	7.58	7.9	92.1	0.0	-5.24	0.68	0.57	0.84	4.51	6204	880	22	0	0	0	0	logfile
✔	8BXG	16318	2024-09-28	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.54	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.003	0.55	0.0	0.03	19.08	0.00	2.226	3.55	1.61	7.1	92.9	0.0	1.26	0.19	0.66	0.81	1.98	17301	1093	4	0	6	0	8796	logfile
✔	8BHW	16071	2024-09-29	2022-11-01	3.2	4.17	3.28	3.6	0.003	0.56	0.0	0.03	16.12	0.00	2.188	6.49	0.18	3.2	96.8	0.0	3.05	0.76	0.83	1.53	3.6	0.003	0.53	0.0	0.03	16.66	0.00	2.605	4.89	1.59	3.3	96.7	0.0	3.51	1.11	0.76	0.83	1.22	21240	2656	8	0	0	0	0	logfile
✔	8AXB	15698	2024-09-24	2022-08-31	2.87	3.44	2.88	3.1	0.004	0.62	0.0	0.03	23.87	0.01	2.036	18.05	0.53	5.9	94.1	0.0	-0.94	0.79	0.71	1.53	3.1	0.003	0.61	0.0	0.03	23.56	0.00	2.054	14.50	2.38	3.3	96.7	0.0	0.19	0.55	0.79	0.73	1.07	8383	430	3	230	0	2	0	logfile
✔	8SF0	40435	2024-09-29	2023-04-10	2.9	3.06	2.90	3.0	0.003	0.52	0.0	0.04	15.10	0.00	2.161	6.14	0.00	2.4	97.6	0.0	1.75	0.63	0.81	2.42	3.0	0.003	0.53	0.0	0.03	17.59	0.00	2.473	5.12	1.61	1.0	99.0	0.0	2.07	0.41	0.61	0.81	2.29	20664	2512	8	0	8	0	0	logfile
✔	7U0G	26258	2024-09-28	2022-02-18	2.6	3.10	—	2.9	0.006	0.78	2.0	0.04	25.56	0.00	2.154	14.81	0.87	3.8	96.1	0.1	0.26	0.84	0.87	2.78	3.0	0.004	0.55	0.0	0.03	26.20	0.00	2.208	21.04	2.29	5.1	94.9	0.0	1.86	1.13	0.82	0.87	2.78	18571	1510	15	266	0	0	1244	logfile
✔	8DHX	27437	2024-09-26	2022-06-28	2.92	3.26	3.25	6.7	0.004	0.82	0.0	0.04	17.61	0.00	2.218	6.05	1.95	1.8	97.7	0.6	3.55	0.41	0.20	4.09	3.3	0.003	0.62	0.0	0.03	18.30	0.00	2.625	6.06	2.27	2.3	97.7	0.0	5.48	0.44	0.70	0.78	3.35	34200	4152	24	0	0	0	0	logfile
✔	7U0i	26260	2024-09-28	2022-02-18	2.6	3.16	—	3.0	0.012	0.86	10.0	0.05	26.82	0.01	2.074	14.30	1.56	3.9	96.0	0.1	0.00	0.85	0.87	3.19	2.9	0.003	0.54	0.0	0.03	27.11	0.00	2.353	20.83	2.94	4.6	95.4	0.0	1.68	0.30	0.81	0.86	3.36	18108	1368	14	298	0	0	1220	logfile
✔	8T2S	40986	2024-09-27	2023-06-06	3.0	3.20	3.02	3.2	0.004	0.89	0.0	0.04	24.68	0.01	2.251	3.85	2.04	2.9	97.1	0.0	-2.71	0.64	0.82	3.11	3.2	0.003	0.61	0.0	0.03	24.25	0.00	2.108	7.73	3.50	5.0	95.0	0.0	-0.08	0.93	0.70	0.86	2.76	14998	389	3	551	13	0	0	logfile
✔	8DP5	27630	2024-09-28	2022-07-14	3.1	3.61	3.19	3.5	0.013	1.78	2.0	0.09	12.28	0.02	2.317	0.79	0.00	1.1	98.9	0.0	-0.51	0.80	0.85	4.09	3.5	0.002	0.52	0.0	0.03	14.33	0.00	2.490	2.25	0.11	1.5	98.5	0.0	3.02	2.87	0.71	0.80	2.48	17780	1145	6	0	0	0	8916	logfile
✔	8JLA	36390	2024-09-26	2023-06-02	3.44	2.77	3.38	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.61	0.0	0.03	28.28	0.00	2.117	7.22	3.87	1.6	98.4	0.0	3.37	0.58	0.82	0.85	1.31	12314	748	10	312	0	0	0	logfile
✔	7AA5	11690	2024-09-28	2020-09-03	4.18	4.64	—	4.4	0.006	0.92	2.0	0.04	14.67	0.00	2.119	21.41	2.04	15.1	84.7	0.2	-4.78	0.69	0.80	—	4.4	0.002	0.55	0.0	0.03	13.33	0.00	2.286	56.26	0.00	11.1	88.7	0.2	-0.26	0.86	0.67	0.78	—	19705	2448	5	0	1	0	8	logfile
✔	7KoD	22972	2024-09-27	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.79	0.00	2.412	1.44	0.36	0.6	99.4	0.0	5.22	0.82	0.87	0.93	7.98	68186	4128	48	0	0	1727	32643	logfile
✔	8JHG	36265	2024-09-27	2023-05-23	3.58	3.41	3.62	3.4	0.004	0.59	0.0	0.03	26.86	0.00	2.152	8.47	0.92	5.4	94.6	0.0	0.29	0.81	0.83	1.74	3.4	0.004	0.60	0.0	0.03	26.74	0.00	2.471	7.69	0.92	5.8	94.2	0.0	0.87	1.34	0.81	0.84	1.08	14829	1040	12	320	2	0	0	logfile

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