Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C0i	45085	2024-09-24	2024-05-25	2.91	2.56	2.89	2.8	0.006	1.03	0.0	0.06	21.52	0.01	2.090	1.50	0.80	1.4	98.6	0.0	-0.39	0.67	0.89	5.23	2.9	0.003	0.56	0.0	0.03	21.16	0.00	1.960	3.45	1.07	2.1	97.9	0.0	1.44	0.37	0.68	0.90	4.14	7676	425	5	197	2	0	0	logfile
✔	8KCB	37098	2024-09-26	2023-08-07	3.17	4.13	3.28	3.5	0.005	0.57	0.0	0.03	26.34	0.00	2.302	8.81	0.23	1.3	98.6	0.1	-1.26	0.83	0.77	0.89	3.5	0.004	0.65	0.0	0.03	27.44	0.00	2.143	10.29	2.42	2.1	97.9	0.0	2.48	1.07	0.85	0.86	0.99	14071	1184	12	252	2	0	0	logfile
✔	9ENC	19831	2024-09-23	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✔	8WT7	37828	2024-09-27	2023-10-18	2.7	3.41	2.76	3.1	0.008	1.31	0.0	0.08	19.85	0.00	1.608	0.25	0.49	0.7	99.3	0.0	-1.68	0.88	0.88	3.73	3.1	0.003	0.50	0.0	0.03	20.56	0.00	1.993	4.18	0.49	0.6	99.4	0.0	3.09	0.44	0.86	0.86	3.08	14846	1246	14	239	2	4	0	logfile
✔	8UW1	42636	2024-09-27	2023-11-05	2.88	3.37	2.99	3.1	0.008	0.73	0.0	0.05	27.27	0.00	2.273	3.06	0.00	2.4	97.6	0.0	0.97	0.83	0.82	2.55	3.1	0.004	0.58	0.0	0.03	27.85	0.00	2.514	4.25	1.71	2.5	97.5	0.0	2.23	0.58	0.85	0.89	2.97	12164	783	11	292	0	0	0	logfile
✔	8UC0	42111	2024-09-24	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.003	0.52	0.0	0.03	13.78	0.00	2.451	1.88	1.12	2.6	97.4	0.0	3.48	0.91	0.63	0.88	3.66	6861	422	2	0	3	102	3375	logfile
✔	9CEP	45506	2024-09-28	2024-06-26	3.13	3.60	3.12	3.2	0.007	0.75	0.0	0.04	13.53	0.00	2.092	5.97	0.01	1.3	98.6	0.1	0.78	0.56	0.89	3.19	3.2	0.004	0.48	0.0	0.03	14.39	0.00	2.560	4.03	0.39	1.0	99.0	0.0	4.62	0.87	0.56	0.88	2.53	71669	10027	37	0	0	0	0	logfile
✔	8UB3	42075	2024-09-28	2023-09-22	3.3	3.17	3.38	3.1	0.005	0.69	0.0	0.04	9.45	0.01	2.321	4.56	0.00	0.0	100.0	0.0	3.84	0.45	0.71	2.58	3.2	0.003	0.40	0.0	0.03	14.71	0.00	2.490	4.96	1.54	0.5	99.5	0.0	6.34	0.70	0.47	0.74	1.79	71260	4480	20	0	0	0	36780	logfile
✔	9CEM	45504	2024-09-28	2024-06-26	2.46	2.77	2.48	2.8	0.003	0.61	0.0	0.04	13.44	0.00	2.021	7.74	0.04	1.1	98.9	0.0	0.00	0.57	0.85	3.87	2.7	0.003	0.50	0.0	0.03	15.80	0.00	2.277	4.32	1.69	0.6	99.4	0.0	4.14	0.37	0.56	0.86	3.63	72372	9990	37	0	0	0	0	logfile
✔	9G2U	50984	2024-09-23	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.51	0.0	0.03	16.06	0.00	2.565	6.99	1.80	0.4	99.6	0.0	6.36	4.28	0.71	0.83	0.58	3634	456	2	0	0	0	0	logfile
✔	7D69	30591	2024-09-25	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.86	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.003	0.59	0.0	0.03	28.30	0.00	2.531	12.88	2.10	2.4	97.6	0.0	1.80	1.17	0.77	0.79	1.68	10857	727	10	250	0	0	0	logfile
✔	7DBH	30631	2024-09-25	2020-10-20	3.6	4.18	—	3.4	0.007	0.74	1.0	0.05	28.57	0.00	1.451	11.99	0.17	3.2	96.8	0.0	0.54	0.91	0.85	2.15	3.4	0.004	0.67	0.0	0.03	28.85	0.00	2.112	11.00	2.25	2.1	97.9	0.0	2.78	0.63	0.91	0.85	1.02	10631	697	10	252	0	0	0	logfile
✔	6DWB	8924	2024-09-28	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.48	0.0	0.03	13.65	0.00	2.524	2.84	1.41	3.3	96.7	0.0	4.59	1.13	0.75	0.90	2.72	18360	2340	30	0	0	0	0	logfile
✔	9CES	45517	2024-09-27	2024-06-27	3.28	3.52	3.31	3.5	0.013	1.96	0.0	0.10	23.23	0.03	2.515	1.01	0.91	4.1	95.9	0.0	-0.87	0.56	0.46	2.49	3.4	0.003	0.62	0.0	0.03	23.35	0.00	2.185	6.00	2.18	4.1	95.9	0.0	0.99	1.27	0.71	0.74	2.42	15839	612	4	181	0	0	7001	logfile
✔	7WLR	32591	2024-09-25	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.003	0.53	0.0	0.03	28.01	0.00	2.165	6.90	1.41	1.2	98.8	0.0	3.29	1.20	0.77	0.82	2.12	11922	754	10	290	0	0	0	logfile
✔	7XZY	33534	2024-09-26	2022-06-03	3.97	4.47	3.88	3.9	0.004	0.69	0.0	0.04	27.84	0.00	2.062	14.33	0.16	1.9	98.1	0.0	1.04	0.83	0.69	0.95	4.0	0.005	0.72	0.0	0.03	28.35	0.00	2.047	8.44	1.73	2.7	97.3	0.0	1.97	2.21	0.92	0.88	1.11	12821	762	10	330	0	0	0	logfile
✔	7ZF1	14694	2024-09-25	2022-03-31	4.14	4.39	4.33	4.3	0.005	0.81	0.0	0.04	16.57	0.01	1.299	3.24	0.00	2.7	97.3	0.0	0.76	0.78	0.73	—	4.2	0.003	0.54	0.0	0.03	16.89	0.00	2.244	7.84	0.00	2.5	97.5	0.0	1.83	2.39	0.79	0.76	—	38889	2297	5	54	0	0	19431	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	8VFY	43194	2024-09-26	2023-12-22	2.89	3.58	2.87	3.2	0.005	0.68	0.0	0.04	26.42	0.00	2.203	1.42	0.27	1.7	98.1	0.1	2.05	0.88	0.85	2.26	3.2	0.004	0.65	0.0	0.03	28.08	0.00	2.400	7.36	1.62	2.1	97.8	0.1	2.28	1.41	0.88	0.85	1.74	14046	881	11	342	0	0	0	logfile

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