Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GU6	34270	2024-09-27	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	18.66	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.56	0.0	0.04	18.58	0.00	2.545	9.67	3.98	6.3	93.7	0.0	-0.30	0.29	0.69	0.79	2.38	15261	1870	5	50	4	0	0	logfile
✔	7BZF	30252	2024-09-25	2020-04-27	3.26	3.61	3.32	3.6	0.003	0.61	0.0	0.04	15.05	0.00	2.199	11.67	0.00	8.5	91.5	0.0	-4.42	0.73	0.77	2.58	3.6	0.003	0.61	0.0	0.04	16.75	0.00	2.423	9.41	1.80	6.7	93.3	0.0	-1.26	0.49	0.69	0.77	1.85	9932	1200	7	19	2	0	0	logfile
✔	7LYL	23594	2024-09-30	2021-03-07	3.72	4.02	—	3.8	0.013	1.70	2.0	0.09	13.01	0.01	2.538	0.17	0.69	5.7	94.2	0.1	-1.00	0.81	0.83	2.52	3.8	0.005	0.66	0.0	0.04	13.99	0.00	2.461	5.63	1.49	4.0	96.0	0.0	0.41	0.59	0.82	0.84	1.94	23826	3003	6	0	28	0	0	logfile
✔	7XTZ	33453	2024-09-25	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.65	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.003	0.51	0.0	0.04	13.54	0.00	2.220	1.89	0.56	2.9	97.1	0.0	-0.10	0.33	0.83	0.86	3.92	51900	3291	21	0	75	0	25032	logfile
✔	7KDK	22825	2024-09-29	2020-10-08	2.8	3.18	—	3.1	0.014	1.78	8.0	0.10	12.36	0.01	2.490	0.30	0.12	5.2	94.7	0.1	-0.98	0.75	0.77	3.89	3.1	0.004	0.65	0.0	0.04	14.34	0.00	2.505	5.50	1.68	2.7	97.3	0.0	0.07	0.66	0.72	0.80	3.27	23688	2916	21	0	63	0	0	logfile
✔	7QFQ	13947	2024-09-25	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.004	0.58	0.0	0.04	14.90	0.00	2.484	7.17	1.51	6.9	93.1	0.0	-0.96	0.38	0.68	0.74	1.31	10659	1291	1	0	0	0	0	logfile
✔	7LWS	23555	2024-09-30	2021-03-01	3.22	3.43	—	3.4	0.014	1.80	4.0	0.11	12.96	0.01	2.517	0.10	0.95	4.7	95.0	0.3	-1.08	0.74	0.82	3.71	3.4	0.004	0.64	0.0	0.05	14.30	0.00	2.454	4.10	1.76	3.1	96.8	0.0	0.40	0.65	0.75	0.85	3.05	24320	3000	24	0	63	0	0	logfile
✔	7AiR	11803	2024-09-26	2020-09-28	3.66	4.42	3.80	4.2	0.008	0.97	0.0	0.05	17.15	0.01	2.231	8.37	1.14	3.3	96.7	0.0	-1.31	0.67	0.74	1.21	4.2	0.003	0.74	0.0	0.04	16.74	0.00	2.396	7.08	4.65	3.3	96.7	0.0	1.12	0.78	0.66	0.82	1.05	13504	1751	7	0	11	0	0	logfile
✔	7SK9	25177	2024-09-25	2021-10-19	3.7	4.01	—	3.9	0.005	0.62	0.0	0.05	15.65	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.003	0.53	0.0	0.04	14.43	0.00	2.362	4.49	1.26	5.1	94.9	0.0	1.18	0.40	0.70	0.81	1.92	11261	716	4	0	3	0	5561	logfile
✔	7N58	24182	2024-09-25	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.65	0.0	0.04	16.21	0.00	2.552	8.73	1.69	5.3	94.7	0.0	0.64	0.56	0.64	0.72	1.06	9326	1200	2	0	0	0	0	logfile
✔	7B9K	12104	2024-09-26	2020-12-14	3.16	3.23	3.17	3.3	0.005	0.66	0.0	0.05	14.96	0.01	2.168	13.51	1.11	5.0	95.0	0.0	-3.10	0.73	0.83	3.07	3.3	0.006	0.62	0.0	0.05	14.93	0.00	2.429	10.08	0.92	6.0	94.0	0.0	-0.60	0.43	0.73	0.85	2.50	59136	7680	24	0	0	0	0	logfile
✔	7SK7	25175	2024-09-26	2021-10-19	3.3	3.48	—	3.4	0.004	0.57	0.0	0.05	14.16	0.00	2.002	4.59	0.00	3.6	96.4	0.0	-0.04	0.68	0.80	3.12	3.4	0.003	0.53	0.0	0.04	15.62	0.00	2.356	4.22	0.66	3.0	97.0	0.0	0.39	0.41	0.67	0.80	2.91	13455	854	6	0	2	0	6650	logfile
✔	8G46	29714	2024-09-24	2023-02-08	2.2	2.34	2.28	2.4	0.008	0.88	0.0	0.06	15.57	0.01	2.207	6.43	1.70	3.0	97.0	0.0	-0.25	0.54	0.79	4.41	2.4	0.002	0.54	0.0	0.04	16.06	0.00	2.559	5.07	1.27	2.9	97.1	0.0	0.41	0.26	0.62	0.82	3.73	8603	1064	7	0	2	110	0	logfile
✔	7SQ0	25373	2024-09-25	2021-11-04	3.7	3.39	3.64	3.6	0.004	0.68	0.0	0.05	13.62	0.00	2.215	4.77	0.00	2.6	97.4	0.0	-2.87	0.72	0.83	3.99	3.6	0.002	0.57	0.0	0.05	15.00	0.00	1.961	5.19	0.20	2.4	97.6	0.0	1.36	1.90	0.71	0.83	3.49	9160	593	7	0	42	0	4286	logfile
✔	7LYP	23598	2024-09-29	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	12.97	0.01	2.509	0.28	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.007	0.80	0.0	0.05	12.63	0.00	2.427	10.37	0.00	5.9	94.1	0.1	-0.40	0.67	0.83	0.83	—	23504	2985	6	0	28	0	0	logfile
✔	7LYQ	23599	2024-09-29	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	1.0	0.10	12.67	0.01	2.521	0.30	0.43	5.2	94.3	0.4	-0.83	0.77	0.83	3.22	3.5	0.004	0.62	0.0	0.04	14.14	0.00	2.469	4.01	1.29	3.1	96.9	0.0	0.55	1.24	0.79	0.86	2.55	23641	2985	6	0	38	0	0	logfile
✔	6RiU	4898	2024-09-23	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.65	0.0	0.03	16.40	0.00	2.434	10.05	1.97	5.6	94.4	0.0	-1.03	1.42	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7SK8	25176	2024-09-26	2021-10-19	3.3	3.55	—	3.5	0.007	0.73	0.0	0.06	15.20	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.51	0.0	0.04	14.26	0.00	2.423	3.93	0.82	4.4	95.6	0.0	0.07	0.30	0.68	0.83	2.85	13389	835	7	0	8	0	6513	logfile
✔	7TLB	25986	2024-09-29	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	3.2	0.003	0.60	0.0	0.04	15.05	0.00	2.449	5.63	1.92	3.0	97.0	0.0	0.16	1.48	0.76	0.85	2.75	22806	2916	3	0	0	0	0	logfile
✔	7T32	25648	2024-09-23	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.70	0.0	0.04	16.07	0.00	2.509	8.27	3.17	3.8	96.0	0.3	2.46	1.25	0.44	0.79	0.65	2861	375	2	0	1	0	0	logfile

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