Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SN2	40610	2024-09-26	2023-04-26	3.6	3.75	3.64	3.8	0.003	0.53	0.0	0.03	25.92	0.00	1.329	7.23	0.00	1.8	98.2	0.0	2.22	0.75	0.83	1.35	3.7	0.004	0.62	0.0	0.04	27.06	0.00	2.136	6.25	1.99	3.9	96.1	0.0	1.69	0.38	0.72	0.84	1.04	13992	1000	13	294	2	0	0	logfile
✔	8SZi	40917	2024-09-28	2023-05-29	3.5	2.34	—	1.9	0.008	0.97	2.0	0.12	13.69	0.01	1.971	4.45	0.05	2.7	97.3	0.0	0.27	0.78	0.78	2.50	1.8	0.002	0.54	0.0	0.04	14.99	0.00	2.319	3.54	1.07	2.8	97.2	0.0	0.87	0.57	0.79	0.78	2.16	17868	2249	10	0	18	0	0	logfile
✔	8SMZ	40607	2024-09-26	2023-04-26	3.2	3.42	3.24	3.4	0.004	0.57	0.0	0.04	26.57	0.00	1.330	5.43	0.00	2.8	97.2	0.0	1.15	0.73	0.84	3.11	3.4	0.004	0.56	0.0	0.04	26.73	0.00	2.180	4.41	0.58	2.4	97.6	0.0	1.64	0.20	0.70	0.84	2.64	13998	1000	13	294	2	0	0	logfile
✔	8VY9	43650	2024-09-24	2024-02-07	2.88	2.27	2.92	2.0	0.005	0.70	0.0	0.05	14.27	0.00	2.245	3.56	0.00	4.2	95.8	0.0	-0.69	0.78	0.80	3.74	2.1	0.004	0.61	0.0	0.04	16.33	0.00	2.413	6.43	2.21	5.4	94.6	0.0	1.04	0.49	0.79	0.81	3.30	8668	1134	6	0	2	0	0	logfile
✔	8KHF	37243	2024-09-26	2023-08-21	3.13	3.56	3.30	3.5	0.006	0.67	0.0	0.04	12.89	0.00	2.169	8.59	0.00	3.1	96.9	0.0	-2.87	0.64	0.84	2.90	3.5	0.004	0.88	1.0	0.04	15.19	0.00	2.484	7.22	1.75	1.7	98.3	0.0	2.10	0.51	0.64	0.85	2.09	12128	1596	20	0	1	0	0	logfile
✔	8C89	16473	2024-09-23	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.004	0.86	0.0	0.05	13.54	0.01	2.401	25.25	0.00	11.0	89.0	0.0	-2.05	0.56	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8iKJ	35514	2024-09-23	2023-02-28	3.2	2.32	—	1.5	0.005	0.70	0.0	0.08	12.44	0.01	2.162	5.92	0.00	3.0	97.0	0.0	1.60	0.77	0.75	2.35	1.4	0.004	0.77	0.0	0.04	13.71	0.00	2.540	8.88	0.66	2.5	97.5	0.0	1.54	1.07	0.80	0.79	2.18	4200	532	2	0	3	0	0	logfile
✔	8SN0	40608	2024-09-26	2023-04-26	3.2	3.37	3.21	3.4	0.004	0.56	0.0	0.04	26.42	0.00	1.331	5.43	0.00	2.4	97.6	0.0	1.04	0.75	0.85	2.59	3.4	0.005	0.58	0.0	0.04	26.90	0.00	2.118	4.10	1.17	2.6	97.4	0.0	1.55	0.21	0.74	0.87	2.39	13989	1000	13	294	2	0	0	logfile
✔	8KFZ	37209	2024-09-24	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.003	0.66	0.0	0.04	16.23	0.00	2.483	11.64	4.25	2.5	97.5	0.0	0.79	0.33	0.72	0.72	1.37	8966	1139	5	0	0	0	0	logfile
✔	8X84	38135	2024-09-30	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.44	0.0	0.03	15.25	0.00	2.485	3.62	0.91	1.1	98.9	0.0	3.63	0.47	0.59	0.80	2.83	24534	1524	12	0	6	4	12444	logfile
✔	8HWC	35053	2024-09-27	2022-12-29	3.3	3.53	3.33	3.5	0.003	0.60	0.0	0.04	16.49	0.00	2.245	10.08	0.30	6.5	93.5	0.0	-1.80	0.69	0.76	2.11	3.5	0.003	0.63	0.0	0.04	16.91	0.00	2.532	6.09	2.13	6.1	93.9	0.0	-1.56	1.20	0.71	0.82	2.11	14943	1836	6	0	0	0	0	logfile
✔	8QLo	18486	2024-09-24	2023-09-20	2.57	3.41	2.60	3.2	0.009	1.18	1.0	0.08	15.29	0.01	2.209	14.78	2.16	4.5	95.4	0.1	-1.41	0.76	0.78	2.76	3.2	0.004	0.67	0.0	0.04	16.63	0.00	2.412	8.25	3.18	2.6	97.4	0.0	0.49	0.88	0.77	0.80	2.82	7282	892	2	0	0	0	0	logfile
✔	8oPL	17072	2024-09-24	2023-04-07	2.41	2.59	2.48	2.6	0.004	0.57	0.0	0.04	18.29	0.00	2.317	4.21	0.71	0.5	99.5	0.0	0.52	0.51	0.86	3.43	2.6	0.003	0.53	0.0	0.04	18.60	0.00	2.603	2.51	1.91	1.0	99.0	0.0	1.01	0.25	0.50	0.86	3.48	50679	6048	54	135	0	0	0	logfile
✔	8SMX	40605	2024-09-28	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.66	0.00	2.150	4.02	0.93	2.2	97.8	0.0	1.50	0.18	0.73	0.87	2.81	13998	1000	13	294	2	0	0	logfile
✔	8V4Q	42975	2024-09-23	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.002	0.48	0.0	0.04	16.96	0.00	2.492	1.26	2.09	1.6	98.4	0.0	0.72	0.35	0.56	0.88	3.07	5993	761	3	0	0	0	0	logfile
✔	8G5B	29738	2024-09-24	2023-02-12	3.1	2.83	2.97	3.0	0.006	0.63	1.0	0.05	13.65	0.01	2.208	7.38	0.70	3.5	96.5	0.0	0.40	0.57	0.84	4.24	3.0	0.003	0.61	0.0	0.04	15.75	0.00	2.598	5.47	2.80	3.1	96.9	0.0	0.44	0.39	0.64	0.89	3.71	9009	1171	8	0	2	0	0	logfile
✔	9BP6	44762	2024-09-26	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.58	0.0	0.04	17.08	0.00	1.926	5.58	2.75	2.2	97.8	0.0	0.64	0.67	0.74	0.83	3.09	13631	1732	8	0	8	0	0	logfile
✔	8PVX	17979	2024-09-27	2023-07-18	3.55	4.27	3.13	3.6	0.003	0.79	0.0	0.05	13.29	0.01	1.951	4.68	0.00	4.0	96.0	0.0	-0.31	0.78	0.87	3.04	3.7	0.003	0.64	0.0	0.04	14.34	0.00	1.975	6.04	0.31	2.4	97.6	0.0	1.45	1.30	0.78	0.87	2.37	15140	1920	15	0	10	0	0	logfile
✔	8RML	19363	2024-09-30	2024-01-08	3.84	4.20	4.01	4.1	0.004	0.60	0.0	0.04	14.77	0.00	2.198	12.94	0.46	3.7	96.3	0.0	0.77	0.65	0.79	1.28	4.1	0.002	0.62	0.0	0.04	15.69	0.00	2.389	8.02	2.78	3.0	97.0	0.0	1.94	0.50	0.64	0.76	1.08	24454	3088	13	0	0	0	0	logfile
✔	8SN7	40615	2024-09-26	2023-04-26	3.7	3.83	3.62	3.7	0.004	0.57	0.0	0.04	25.76	0.00	1.330	7.72	0.00	3.2	96.8	0.0	1.83	0.84	0.86	1.03	3.7	0.003	0.62	0.0	0.04	26.60	0.00	2.082	7.57	1.73	3.3	96.7	0.0	1.90	0.39	0.84	0.87	0.84	14600	1076	14	294	2	0	0	logfile

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