Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WUN	21917	2024-09-25	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.003	0.72	0.0	0.04	14.78	0.00	2.541	7.21	0.85	9.9	90.1	0.0	-3.47	0.55	0.67	0.78	1.54	10082	1326	4	0	0	0	0	logfile
✔	7L48	23157	2024-09-26	2020-12-18	3.9	4.22	—	3.9	0.005	0.96	2.0	0.06	20.41	0.01	2.263	6.23	0.22	9.8	90.2	0.0	-3.57	0.88	0.80	0.79	3.9	0.003	0.66	0.0	0.04	20.51	0.00	2.343	14.00	1.89	7.6	92.4	0.0	-0.73	1.22	0.89	0.82	0.76	11488	1041	5	144	4	0	0	logfile
✔	6o7H	0641	2024-09-28	2019-03-07	2.9	3.03	—	3.0	0.006	1.10	0.0	0.07	14.23	0.01	1.596	11.46	1.21	5.3	94.6	0.1	-4.34	0.74	0.81	3.78	3.0	0.003	0.66	0.0	0.04	17.92	0.00	2.448	6.70	2.05	4.4	95.6	0.0	-0.41	1.32	0.76	0.86	3.02	17576	2038	14	51	96	0	0	logfile
✔	7Uo1	26637	2024-09-27	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	31.57	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.004	1.86	0.0	0.24	31.18	0.01	2.029	15.50	4.08	5.5	94.5	0.0	-0.22	1.81	0.57	0.65	1.50	16588	112	4	455	10	0	5894	logfile
✔	7ELA	31178	2024-09-26	2021-04-09	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.71	0.00	2.153	11.82	2.79	7.9	92.1	0.0	-2.61	0.72	0.78	2.61	3.4	0.003	0.65	0.0	0.04	16.91	0.00	2.371	10.71	2.72	6.9	93.1	0.0	-0.21	0.48	0.73	0.82	2.23	11791	1451	5	7	3	0	0	logfile
✔	6Z8K	11118	2024-09-28	2020-06-02	3.02	3.35	—	3.1	0.009	0.96	0.0	0.06	12.85	0.01	1.496	8.84	1.76	5.7	94.0	0.3	-3.52	0.84	0.85	4.26	3.1	0.003	0.58	0.0	0.04	15.08	0.00	1.967	6.85	1.46	4.6	95.4	0.0	0.72	1.02	0.85	0.89	3.28	18587	2158	7	45	2	0	0	logfile
✔	7PKP	13476	2024-09-28	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.003	0.49	0.0	0.04	15.95	0.00	2.527	5.77	3.48	4.1	95.9	0.0	-0.78	1.16	0.71	0.82	2.07	20360	2504	8	0	0	0	0	logfile
✔	7PKo	13474	2024-09-28	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.62	0.0	0.04	16.27	0.00	2.219	8.31	3.08	4.3	95.7	0.0	-0.53	0.61	0.75	0.81	2.33	20368	2504	8	0	0	0	0	logfile
✔	7RYS	24747	2024-09-28	2021-08-26	3.7	3.49	—	3.6	0.007	1.12	0.0	0.06	18.24	0.01	2.247	6.73	0.30	5.7	94.3	0.0	-1.42	0.68	0.70	1.94	3.6	0.003	0.70	0.0	0.04	16.55	0.00	2.512	6.13	1.50	4.5	95.5	0.0	0.23	0.55	0.68	0.70	2.38	12900	1556	8	0	32	0	0	logfile
✔	6Qi8	4552	2024-09-27	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.90	0.0	0.05	17.87	0.01	2.185	14.58	2.35	7.5	92.5	0.0	-2.50	1.54	0.32	0.22	0.55	14789	1907	12	0	6	0	0	logfile
✔	7CM3	30400	2024-09-26	2020-07-24	3.1	3.49	3.31	3.4	0.015	1.77	1.0	0.10	15.85	0.01	2.199	7.59	2.12	4.8	94.9	0.3	-0.93	0.68	0.73	2.68	3.4	0.003	0.65	0.0	0.04	16.10	0.00	2.397	5.23	2.20	3.5	96.5	0.0	1.18	1.66	0.67	0.82	1.98	12418	1460	6	0	17	0	0	logfile
✔	7QDo	13922	2024-09-23	2021-11-27	3.6	3.83	3.30	3.7	0.005	0.82	0.0	0.05	11.62	0.00	2.038	7.51	0.00	10.0	90.0	0.0	-0.82	0.71	0.74	3.77	3.7	0.004	0.79	0.0	0.05	15.94	0.00	2.505	9.96	1.85	8.3	91.7	0.0	-0.40	0.73	0.71	0.76	3.16	3304	424	2	0	0	0	0	logfile
✔	7RU0	24692	2024-09-27	2021-08-16	4.3	3.77	—	4.2	0.005	1.13	0.0	0.06	14.47	0.01	2.146	8.30	0.00	6.9	93.1	0.0	-3.06	0.48	0.48	—	4.2	0.003	0.87	0.0	0.04	14.36	0.01	2.274	10.74	0.00	5.7	94.3	0.0	-0.75	0.99	0.61	0.62	—	12284	1536	8	0	4	0	0	logfile
✔	7PiV	13454	2024-09-24	2021-08-23	2.86	2.87	—	3.2	0.013	1.71	1.0	0.10	13.14	0.00	2.234	3.79	0.86	5.7	94.1	0.2	-2.91	0.70	0.84	3.61	3.2	0.003	0.60	0.0	0.04	15.05	0.00	2.343	5.42	2.32	3.1	96.9	0.0	0.99	0.95	0.69	0.85	3.29	7814	976	13	0	2	115	0	logfile
✔	6W8N	21575	2024-09-23	2020-03-20	3.2	3.39	—	3.3	0.007	0.77	0.0	0.05	16.69	0.00	2.244	12.74	8.14	7.1	92.9	0.0	-2.74	0.61	0.85	1.84	3.3	0.003	0.66	0.0	0.04	16.91	0.00	2.404	9.37	5.73	4.3	95.7	0.0	0.75	0.91	0.58	0.85	2.34	6160	804	2	0	0	0	0	logfile
✔	8ASi	15616	2024-09-27	2022-08-19	2.9	2.71	2.83	2.9	0.009	1.27	0.0	0.05	20.47	0.01	1.929	5.10	0.00	2.5	97.4	0.1	-0.83	0.54	0.77	4.04	2.9	0.003	0.68	0.0	0.04	18.50	0.00	2.484	5.38	1.74	1.9	98.1	0.0	1.26	0.54	0.59	0.82	3.01	14720	1789	14	0	21	0	0	logfile
✔	6NoG	0468	2024-09-28	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.64	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.003	0.63	0.0	0.04	26.58	0.00	2.410	9.96	2.31	2.8	97.2	0.0	1.47	1.38	0.86	0.85	0.63	14929	1124	12	292	0	0	0	logfile
✔	7RYR	24746	2024-09-28	2021-08-26	3.6	3.52	—	3.6	0.007	1.13	4.0	0.06	19.14	0.01	2.197	7.18	0.60	7.0	93.0	0.0	-1.65	0.76	0.81	1.67	3.6	0.004	0.73	0.0	0.04	17.15	0.01	2.501	6.69	4.50	4.8	95.2	0.0	0.24	0.56	0.77	0.82	1.31	13024	1556	8	0	32	0	0	logfile
✔	6Qi9	4553	2024-09-27	2019-01-18	4.63	4.71	—	4.6	0.007	1.09	0.0	0.06	17.10	0.01	1.993	10.33	0.39	9.0	91.0	0.0	-4.28	0.82	0.82	—	4.6	0.003	0.77	0.0	0.05	15.35	0.00	2.364	10.81	0.00	5.8	94.2	0.0	-1.38	0.80	0.82	0.81	—	14559	1879	11	0	5	0	0	logfile
✔	7VHQ	32003	2024-09-27	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.5	0.003	0.62	0.0	0.04	15.50	0.00	2.427	7.74	1.50	3.3	96.7	0.0	1.88	0.40	0.74	0.84	1.53	16650	2076	12	0	0	0	0	logfile

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