Table showing results for September 2024

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DTW	30856	2024-09-25	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.83	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.61	0.0	0.04	12.47	0.00	2.030	6.44	0.00	7.8	92.2	0.0	-1.18	0.59	0.72	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7XYF	33520	2024-09-27	2022-06-01	4.3	4.47	3.32	4.3	0.008	0.93	0.0	0.05	27.11	0.01	2.217	13.45	2.14	4.9	95.1	0.0	-4.98	0.87	0.81	—	4.3	0.004	0.69	0.0	0.04	25.75	0.00	2.021	16.11	0.00	4.1	95.9	0.0	-0.20	1.33	0.87	0.81	—	17321	1418	11	292	0	0	0	logfile
✔	6Fo0	4286	2024-09-26	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	9.17	0.01	2.040	5.54	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.62	0.0	0.04	12.48	0.00	2.185	7.52	0.00	4.5	95.5	0.0	-0.65	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	8iGG	35432	2024-09-27	2023-02-20	4.09	4.18	4.06	4.1	0.003	0.61	0.0	0.04	15.14	0.00	2.146	9.75	0.00	7.4	92.6	0.0	-0.07	0.74	0.82	—	4.1	0.003	0.64	0.0	0.04	15.39	0.00	2.492	7.92	0.00	6.9	93.0	0.1	-0.05	0.35	0.75	0.82	—	15998	2054	4	0	0	0	0	logfile
✔	6HQE	0252	2024-09-24	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.005	0.83	0.0	0.04	12.09	0.01	2.495	18.08	0.00	4.4	95.6	0.0	1.46	0.97	0.65	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	5JUY	8178	2024-09-29	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	11.01	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.005	0.76	0.0	0.04	12.87	0.00	2.404	11.56	0.00	6.5	93.4	0.1	-0.89	0.94	0.84	0.70	—	76058	9461	32	0	14	0	0	logfile
✔	6ZFo	11184	2024-09-28	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.43	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.61	0.0	0.04	11.43	0.00	2.320	7.83	0.00	5.5	94.5	0.0	-1.09	1.58	0.52	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	5YWD	6853	2024-09-25	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.77	0.0	0.04	13.35	0.00	1.927	12.30	0.00	3.9	96.1	0.0	1.17	1.81	0.65	0.77	—	8997	1154	2	0	4	0	0	logfile
✔	6XGC	22180	2024-09-27	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	8.17	0.00	1.958	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.65	0.0	0.04	11.12	0.00	2.477	9.83	0.00	3.3	96.7	0.0	0.26	1.32	0.81	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7TZ0	26201	2024-09-23	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.003	0.67	0.0	0.04	12.73	0.00	2.446	15.03	0.00	9.3	90.7	0.0	-1.85	2.07	0.44	0.63	—	2674	347	2	0	0	0	0	logfile
✔	6PVP	20496	2024-09-29	2019-07-21	4.48	4.57	—	4.4	0.008	1.24	0.0	0.06	12.74	0.01	2.223	7.59	0.81	15.6	84.2	0.2	-5.24	0.68	0.77	—	4.4	0.003	0.84	0.0	0.04	13.70	0.00	2.376	13.14	0.00	14.5	85.4	0.2	-1.86	2.09	0.68	0.80	—	21425	2644	5	0	1	0	0	logfile
✔	6PWX	20514	2024-09-30	2019-07-23	4.2	4.53	—	4.2	0.003	0.59	0.0	0.04	27.21	0.00	2.098	13.58	3.58	4.5	95.5	0.0	-1.76	0.89	0.85	—	4.2	0.008	0.77	0.0	0.04	26.64	0.01	2.013	20.44	0.00	5.0	95.0	0.0	-0.07	1.19	0.90	0.87	—	14411	1074	11	292	0	0	0	logfile
✔	5oH0	3809	2024-09-24	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.029	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.002	0.51	0.0	0.04	10.69	0.00	2.618	4.01	0.00	1.1	98.9	0.0	-1.82	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	6ZD0	11172	2024-09-24	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.77	0.0	0.04	5.49	0.00	2.602	5.29	0.00	15.7	84.1	0.2	-4.88	2.52	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	5YW8	6848	2024-09-24	2017-11-29	4.4	4.51	4.37	4.4	0.005	0.80	4.0	0.05	13.79	0.01	2.030	19.10	8.11	4.4	95.1	0.4	-2.46	0.64	0.70	—	4.3	0.005	0.77	0.0	0.04	13.12	0.00	2.466	14.20	0.00	4.6	95.3	0.1	0.56	3.92	0.66	0.76	—	50524	6520	16	0	8	0	0	logfile
✔	7WTH	32786	2024-09-23	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.6	0.004	0.74	0.0	0.05	13.12	0.01	2.565	8.77	0.00	10.6	89.4	0.0	-2.21	1.20	0.69	0.71	—	3257	421	3	0	0	0	0	logfile
✔	6NAV	0397	2024-09-28	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.32	0.00	2.480	7.00	0.00	5.1	94.9	0.0	-0.59	1.52	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6PVQ	20497	2024-09-28	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.005	0.83	0.0	0.05	13.72	0.01	2.392	13.25	0.00	13.6	86.3	0.1	-2.41	1.06	0.68	0.78	—	17640	2160	4	0	0	0	0	logfile
✔	8FoH	29349	2024-09-27	2022-12-30	4.6	4.87	4.51	4.3	0.013	1.46	4.0	0.09	13.11	0.01	1.447	3.87	0.49	2.6	97.3	0.1	-0.42	0.89	0.68	—	4.3	0.003	0.57	0.0	0.04	13.10	0.00	2.514	7.77	0.00	1.5	98.5	0.0	2.13	1.27	0.94	0.81	—	16996	2048	7	20	1	0	0	logfile
✔	7DTU	30854	2024-09-25	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.69	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.65	0.0	0.04	13.07	0.00	2.549	9.42	0.00	7.9	92.1	0.0	-0.85	1.10	0.68	0.80	—	10846	1558	10	0	14	0	0	logfile

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