Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NT5	0502	2024-09-23	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.65	0.00	2.633	5.12	0.00	1.1	98.9	0.0	1.83	1.15	0.73	0.82	—	4586	584	2	0	0	0	0	logfile
✔	7TKo	25976	2024-09-28	2022-01-17	4.8	7.71	5.39	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.007	1.06	0.0	0.00	6.51	0.01	2.257	7.86	0.00	13.1	86.7	0.3	-1.00	0.84	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2024-09-28	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.007	1.08	0.0	0.00	6.92	0.01	2.255	9.05	0.00	13.6	86.1	0.3	-1.91	0.85	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7XSL	33426	2024-09-26	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.74	0.01	1.881	26.63	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8HF2	34710	2024-09-23	2022-11-09	4.14	5.08	4.11	4.8	0.012	1.04	0.0	0.05	14.20	0.00	2.264	15.84	0.00	5.1	94.9	0.0	-4.39	0.57	0.77	—	4.7	0.003	0.75	0.0	0.04	13.61	0.00	2.491	11.57	0.00	2.5	97.5	0.0	0.37	2.68	0.50	0.79	—	4660	600	5	0	0	0	0	logfile
✔	6oGE	20055	2024-09-26	2019-04-02	4.36	4.64	—	4.4	0.008	1.16	0.0	0.06	13.40	0.01	2.203	12.45	0.16	13.5	86.4	0.1	-4.34	0.80	0.81	—	4.4	0.004	0.83	0.0	0.05	12.55	0.01	2.468	15.07	0.00	9.1	90.9	0.1	-2.86	1.40	0.79	0.80	—	11494	1489	7	0	9	0	0	logfile
✔	7PTQ	13633	2024-09-27	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.70	0.0	0.04	26.94	0.00	2.105	38.60	0.00	0.0	0.0	0.0	—	2.74	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7ZJ5	14741	2024-09-26	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	23.36	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	25.94	0.01	1.845	54.52	0.00	0.0	0.0	0.0	—	3.94	0.93	0.85	—	12014	0	2	374	1	0	4030	logfile
✔	7XSM	33427	2024-09-26	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.36	0.01	1.865	41.31	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7XSN	33428	2024-09-24	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.72	0.00	2.130	17.85	0.00	0.0	0.0	0.0	—	0.29	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7TKH	25969	2024-09-28	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.004	0.80	0.0	0.00	5.09	0.00	2.458	2.54	0.00	9.2	90.6	0.2	0.67	1.64	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2024-09-28	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.62	—	4.4	0.007	1.07	0.0	0.00	6.23	0.01	2.196	7.82	0.00	10.0	89.7	0.3	-0.44	1.54	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7ZQS	14874	2024-09-25	2022-05-02	2.54	3.28	2.59	3.0	0.004	0.57	0.0	0.04	18.00	0.00	2.257	5.71	0.00	2.4	97.6	0.0	1.32	0.88	0.91	5.01	3.0	0.004	0.54	0.0	0.04	18.36	0.00	2.152	5.21	0.00	2.0	98.0	0.0	1.78	0.20	0.86	0.90	4.17	11354	1278	12	60	14	0	0	logfile
✔	7TKM	25974	2024-09-28	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.003	0.78	0.0	0.00	5.11	0.00	2.272	2.00	0.00	7.9	91.8	0.3	0.14	1.51	0.82	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	7XSK	33425	2024-09-26	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.76	0.01	1.907	23.98	0.00	0.0	0.0	0.0	—	1.91	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7KAT	22783	2024-09-25	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.90	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.003	0.59	0.0	0.04	12.17	0.00	2.559	8.98	0.00	2.7	97.3	0.0	2.14	1.33	0.66	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7RU6	24698	2024-09-23	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.87	0.00	2.486	7.00	0.00	1.3	98.7	0.0	3.51	0.77	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	7KAP	22779	2024-09-25	2020-10-01	4.1	4.58	4.09	4.2	0.003	0.55	0.0	0.04	11.24	0.00	2.205	8.00	0.00	2.3	97.7	0.0	-1.05	0.62	0.83	—	4.2	0.003	0.62	0.0	0.04	12.29	0.00	2.351	6.79	0.00	2.5	97.5	0.0	1.92	0.62	0.63	0.85	—	10715	1342	7	0	56	0	0	logfile
✔	8AVB	15677	2024-09-27	2022-08-26	4.43	5.51	4.88	4.3	0.005	0.81	1.0	0.05	11.64	0.01	2.142	17.52	0.00	4.4	95.4	0.2	-0.47	0.81	0.63	—	4.2	0.003	0.67	0.0	0.05	12.56	0.01	2.338	20.46	0.00	6.2	93.7	0.1	-1.09	1.63	0.81	0.67	—	10591	1326	3	0	0	0	0	logfile
✔	7TKG	25968	2024-09-28	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.96	0.0	0.00	6.06	0.00	1.985	5.20	0.00	12.6	87.2	0.3	-1.23	1.59	0.80	0.81	—	20228	5056	27	0	0	0	0	logfile

• Page 1 of 506
• next →