Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8To9	41440	2024-09-28	2023-08-03	4.03	4.87	4.07	4.2	0.005	0.98	0.0	0.06	14.79	0.01	2.328	5.45	0.00	7.0	93.0	0.0	-2.52	0.79	0.76	—	4.2	0.004	0.67	0.0	0.05	12.86	0.00	2.419	11.00	0.00	8.4	91.6	0.0	-1.33	1.02	0.81	0.83	—	18788	2249	36	0	82	0	0	logfile
✔	6WL8	21817	2024-09-29	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.003	0.58	0.0	0.03	15.32	0.00	2.353	9.20	0.00	0.3	99.7	0.0	4.72	1.80	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	8CRB	16807	2024-09-24	2023-03-08	4.6	4.12	4.59	4.0	0.013	1.98	2.0	0.10	14.75	0.02	2.540	0.58	1.23	10.1	88.0	1.9	-2.65	0.72	0.61	—	4.0	0.005	0.79	0.0	0.04	13.58	0.01	2.222	16.04	0.00	14.6	84.9	0.5	-2.84	1.48	0.73	0.63	—	8665	582	3	0	0	0	4286	logfile
✔	8CR9	16805	2024-09-24	2023-03-08	4.2	3.61	4.06	4.0	0.013	1.97	3.0	0.10	14.42	0.02	2.568	0.46	2.87	9.6	89.0	1.4	-2.67	0.57	0.61	—	4.0	0.003	0.71	0.0	0.04	13.84	0.01	2.262	7.08	0.00	13.3	86.4	0.4	-2.90	1.03	0.56	0.58	—	8621	571	3	0	0	0	4272	logfile
✔	7TCN	25814	2024-09-30	2021-12-27	4.1	4.79	—	4.1	0.005	0.84	0.0	0.05	15.30	0.01	2.037	4.00	0.12	6.1	93.9	0.0	-1.35	0.84	0.79	—	4.1	0.004	0.70	0.0	0.04	13.06	0.00	2.427	7.13	0.00	6.6	93.4	0.0	-1.33	1.27	0.86	0.85	—	23747	2961	29	0	50	0	0	logfile
✔	8JUY	36666	2024-09-30	2023-06-27	4.34	4.24	4.46	4.2	0.005	0.86	0.0	0.05	15.36	0.01	1.353	19.63	0.15	8.7	91.2	0.1	-1.58	0.73	0.63	—	4.1	0.003	0.75	0.0	0.04	14.75	0.00	2.278	10.32	0.00	6.7	93.3	0.1	-0.87	0.95	0.78	0.72	—	24554	3069	11	0	6	0	0	logfile
✔	7YMN	33934	2024-09-23	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.003	0.59	0.0	0.05	13.64	0.00	2.607	5.23	0.00	5.4	94.6	0.0	-4.44	0.34	0.38	0.81	4.09	3468	456	6	0	0	0	0	logfile
✔	7RX5	24725	2024-09-24	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	7QV6	14168	2024-09-23	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.41	0.0	0.06	12.08	0.00	2.506	1.45	0.00	0.0	100.0	0.0	0.74	0.42	0.41	0.86	6.38	4842	306	18	0	0	0	2556	logfile
✔	8CZD	27095	2024-09-27	2022-05-24	4.6	4.07	4.58	4.4	0.005	0.90	0.0	0.05	16.56	0.00	2.121	23.70	0.00	8.7	91.3	0.0	-0.30	0.46	0.65	—	4.2	0.004	0.88	0.0	0.05	15.86	0.01	2.484	20.59	0.00	7.7	92.3	0.0	-0.99	1.66	0.44	0.63	—	17640	2120	20	0	0	0	0	logfile
✔	8GKG	40183	2024-09-27	2023-03-18	4.38	3.94	4.39	4.9	0.002	0.54	0.0	0.04	12.43	0.00	2.293	5.72	0.00	16.3	83.5	0.2	-2.00	0.45	0.66	—	4.8	0.002	0.64	0.0	0.04	12.22	0.00	2.521	4.31	0.00	13.4	86.3	0.3	-1.43	0.44	0.44	0.65	—	17160	2700	5	0	0	0	0	logfile
✔	7ZoX	14849	2024-09-24	2022-04-26	4.4	3.95	4.37	3.8	0.005	0.72	0.0	0.04	15.62	0.00	2.219	17.13	0.14	7.7	92.3	0.0	-4.40	0.84	0.80	—	3.8	0.005	0.74	0.0	0.04	15.28	0.00	2.472	14.02	0.00	6.5	93.5	0.0	-0.94	1.08	0.84	0.80	—	6772	852	3	0	0	0	0	logfile
✔	5H1C	9567	2024-09-24	2016-10-08	4.5	4.34	—	3.8	0.009	1.30	0.0	0.05	15.37	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.003	0.68	0.0	0.04	15.24	0.00	1.933	11.71	0.00	3.9	95.1	1.0	0.25	0.88	0.58	0.82	—	7602	933	8	18	6	0	0	logfile
✔	6RiB	4887	2024-09-27	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.009	1.10	0.0	0.06	14.45	0.01	2.446	26.95	0.00	22.7	77.3	0.0	-6.12	1.55	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6WL9	21818	2024-09-29	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.82	0.0	0.04	14.43	0.00	2.293	12.95	0.00	0.1	99.9	0.0	3.18	1.41	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	6BNP	7116	2024-09-25	2017-11-17	4.6	4.61	3.78	4.4	0.015	2.10	24.0	0.11	16.18	0.02	1.814	0.55	1.80	8.3	90.3	1.3	-3.94	0.48	0.46	—	4.4	0.003	0.78	0.0	0.04	14.79	0.00	2.045	10.75	0.00	5.0	94.8	0.2	-0.48	1.95	0.60	0.69	—	56792	7160	22	0	16	0	0	logfile
✔	7QV5	14167	2024-09-23	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.37	0.0	0.06	12.18	0.00	2.260	0.36	0.00	0.7	99.3	0.0	-2.06	0.88	0.50	0.89	6.33	5562	342	45	0	18	0	2997	logfile
✔	5H1B	9566	2024-09-24	2016-10-08	4.4	3.94	—	3.6	0.010	1.41	0.0	0.06	16.13	0.01	1.503	54.25	5.67	6.2	91.1	2.6	-1.51	0.59	0.70	—	3.6	0.003	0.71	0.0	0.04	14.09	0.00	2.013	12.70	0.00	4.2	95.0	0.9	0.86	2.98	0.65	0.82	—	7359	924	7	9	6	0	0	logfile
✔	6E9Y	9020	2024-09-24	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.002	0.48	0.0	0.03	11.00	0.00	2.184	5.82	0.00	0.6	99.4	0.0	2.82	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	8JUZ	36667	2024-09-30	2023-06-27	4.29	4.11	4.43	3.9	0.003	0.72	0.0	0.04	15.18	0.00	2.131	9.33	0.07	6.6	93.3	0.1	-0.25	0.66	0.49	—	3.9	0.003	0.74	0.0	0.04	14.71	0.00	2.300	9.94	0.00	6.6	93.3	0.1	0.16	1.56	0.78	0.70	—	25274	3155	12	0	6	0	0	logfile

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