Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GDG	4390	2024-09-24	2018-04-23	4.11	3.92	—	4.0	0.008	1.10	0.0	0.06	13.00	0.00	2.449	0.87	2.07	4.9	94.6	0.5	-3.15	0.76	0.78	—	4.0	0.003	0.69	0.0	0.04	13.02	0.00	2.494	12.41	0.00	3.8	96.2	0.0	0.16	0.81	0.77	0.75	—	7223	997	6	0	1	0	0	logfile
✔	5ZAL	6905	2024-09-26	2018-02-07	4.7	4.44	—	3.8	0.008	1.44	1.0	0.07	15.07	0.01	2.215	19.06	0.97	16.1	83.2	0.7	-5.19	0.87	0.74	—	3.8	0.003	0.89	0.0	0.05	15.34	0.01	2.186	24.05	0.00	14.5	85.5	0.1	-3.24	0.85	0.84	0.61	—	12346	1389	3	58	0	0	0	logfile
✔	7Z2A	14459	2024-09-26	2022-02-26	4.3	4.49	—	4.3	0.012	1.59	2.0	0.09	14.75	0.01	0.925	8.38	0.48	2.8	97.0	0.2	0.00	0.80	0.62	—	4.2	0.003	0.60	0.0	0.04	14.42	0.00	1.842	49.99	0.00	4.1	95.8	0.1	0.34	1.79	0.90	0.80	—	12244	1201	5	0	4	0	2765	logfile
✔	6ZY6	11551	2024-09-26	2020-07-30	4.1	4.75	4.09	4.6	0.010	1.07	2.0	0.08	13.75	0.01	2.304	5.48	0.00	1.6	98.4	0.0	-0.70	0.83	0.77	—	4.6	0.002	0.60	0.0	0.04	16.06	0.00	2.515	6.73	0.00	4.0	96.0	0.0	0.31	2.42	0.85	0.81	—	13504	1520	8	60	2	0	0	logfile
✔	6WKT	21708	2024-09-23	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.53	0.0	0.03	15.20	0.00	2.587	7.85	0.00	3.8	96.2	0.0	4.44	1.35	0.63	0.74	3.44	3152	424	4	0	0	0	0	logfile
✔	7MFE	23814	2024-09-24	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.005	0.78	0.0	0.04	15.38	0.01	1.888	14.69	0.00	7.2	92.8	0.0	-1.11	0.58	0.62	0.64	—	6844	859	4	0	2	0	0	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	6SHS	10204	2024-09-24	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.68	0.00	2.416	3.63	0.00	15.4	84.6	0.0	-5.52	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	6LXE	30006	2024-09-25	2020-02-10	4.2	4.23	—	4.0	0.002	0.59	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	3.9	0.003	0.77	0.0	0.04	14.86	0.00	2.344	16.22	0.00	9.6	90.4	0.0	-2.07	1.28	0.85	0.70	—	6519	813	4	0	2	0	0	logfile
✔	7KoG	22975	2024-09-28	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.0	0.003	0.71	0.0	0.04	16.84	0.00	2.401	9.00	0.00	0.4	99.6	0.0	2.99	1.90	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	6L2T	0814	2024-09-26	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.003	0.72	0.0	0.05	12.75	0.01	2.405	5.70	0.00	12.7	87.3	0.1	-3.91	0.49	0.60	0.76	—	13604	1889	3	0	0	0	0	logfile
✔	6oLL	20116	2024-09-28	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.007	1.11	0.0	0.05	7.72	0.01	2.412	8.19	0.00	16.6	82.9	0.5	-4.23	2.11	0.74	0.69	—	10426	2114	6	0	0	0	0	logfile
✔	6VAB	21135	2024-09-23	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile
✔	6PZB	20533	2024-09-24	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.84	0.00	2.526	6.86	0.00	6.3	93.7	0.0	0.83	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	7BW7	30229	2024-09-24	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.004	0.83	0.0	0.05	15.36	0.00	2.381	17.20	0.00	14.6	85.4	0.0	-4.11	0.74	0.71	0.66	—	8824	1091	3	0	0	0	0	logfile
✔	8CTJ	26992	2024-09-23	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	14.67	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.72	0.0	0.04	14.01	0.00	2.490	13.00	0.00	4.6	95.4	0.0	0.42	1.80	0.50	0.59	—	3312	401	2	0	1	0	0	logfile
✔	7BZX	30262	2024-09-23	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.005	1.11	0.0	0.05	8.68	0.00	2.286	14.37	0.00	21.3	78.7	0.0	-4.55	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6KV5	9577	2024-09-26	2019-09-03	4.6	4.71	—	4.6	0.004	0.82	0.0	0.05	9.59	0.01	2.225	7.54	0.41	8.6	91.3	0.1	-4.90	0.73	0.68	—	4.6	0.003	0.77	0.0	0.05	12.65	0.00	2.377	13.97	0.00	7.0	93.0	0.1	-1.57	1.84	0.76	0.73	—	13532	1679	3	0	0	0	0	logfile
✔	7TT3	26109	2024-09-28	2022-01-31	4.3	4.47	—	4.4	0.006	0.99	0.0	0.05	10.46	0.01	2.059	4.09	0.00	1.1	98.9	0.0	1.09	0.73	0.75	—	4.4	0.003	0.60	0.0	0.04	12.85	0.00	2.331	3.65	0.00	3.4	96.6	0.0	-0.02	1.10	0.71	0.75	—	20524	1338	6	0	0	0	10060	logfile

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