Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K15	36786	2024-09-25	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.007	0.83	0.0	0.05	24.74	0.01	1.756	4.81	0.00	0.0	0.0	0.0	—	0.27	0.67	0.80	—	10093	0	2	470	2	0	0	logfile
✔	8K0P	36776	2024-09-29	2023-07-10	2.99	3.19	3.07	3.1	0.008	0.99	0.0	0.06	24.97	0.01	1.792	8.78	0.00	0.0	0.0	0.0	—	0.73	0.80	—	3.1	0.006	0.73	0.0	0.04	24.65	0.01	1.835	8.35	0.00	0.0	0.0	0.0	—	1.24	0.75	0.83	—	23274	0	4	1084	4	0	0	logfile
✔	8oWD	17234	2024-09-23	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.006	0.77	0.0	0.05	17.46	0.00	2.567	12.73	7.74	2.1	97.9	0.0	-3.48	0.71	0.46	0.79	6.23	1525	200	5	0	0	0	0	logfile
✔	8UB3	42075	2024-09-28	2023-09-22	3.3	3.17	3.38	3.1	0.005	0.69	0.0	0.04	9.45	0.01	2.321	4.56	0.00	0.0	100.0	0.0	3.84	0.45	0.71	2.58	3.2	0.003	0.40	0.0	0.03	14.71	0.00	2.490	4.96	1.54	0.5	99.5	0.0	6.34	0.70	0.47	0.74	1.79	71260	4480	20	0	0	0	36780	logfile
✔	8K0S	36779	2024-09-29	2023-07-10	3.41	3.87	3.74	3.4	0.008	1.01	0.0	0.06	25.18	0.01	1.792	8.76	0.00	0.0	0.0	0.0	—	0.76	0.69	—	3.4	0.006	0.73	0.0	0.04	25.50	0.01	1.789	17.10	0.00	0.0	0.0	0.0	—	2.59	0.85	0.88	—	23312	0	4	1086	2	0	0	logfile
✔	8oT3	17167	2024-09-23	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.004	0.78	0.0	0.05	16.53	0.00	2.543	6.44	2.78	3.8	96.2	0.0	-3.36	1.85	0.42	0.79	7.31	2460	336	12	0	0	0	0	logfile
✔	8oT4	17168	2024-09-23	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.007	0.83	0.0	0.05	18.26	0.00	2.607	9.86	2.87	4.3	95.7	0.0	-2.73	1.34	0.61	0.80	4.38	3444	444	12	0	0	0	0	logfile
✔	8AZ2	15730	2024-09-23	2022-09-05	3.4	3.30	3.43	3.7	0.003	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.007	0.66	0.0	0.05	11.59	0.00	2.330	2.11	1.56	3.8	96.2	0.0	-2.99	0.47	0.49	0.87	6.08	2935	395	30	0	15	0	0	logfile
✔	8oWK	17239	2024-09-23	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile
✔	8YBE	39117	2024-09-23	2024-02-13	2.3	2.50	2.34	2.5	0.006	0.89	0.0	0.05	15.84	0.01	2.236	18.77	2.34	0.0	100.0	0.0	1.36	0.67	0.82	5.54	2.5	0.004	0.67	0.0	0.04	16.69	0.00	2.584	10.50	2.01	2.2	97.8	0.0	1.25	0.34	0.68	0.83	5.59	3110	370	3	0	2	197	0	logfile
✔	8oQi	17111	2024-09-23	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile
✔	8oWJ	17238	2024-09-23	2023-04-28	3.75	3.75	3.51	4.1	0.012	2.26	0.0	0.11	15.84	0.02	2.610	8.57	3.57	0.0	100.0	0.0	-1.73	0.45	0.61	2.82	4.2	0.004	0.91	0.0	0.05	16.37	0.00	2.574	17.69	0.36	9.7	90.3	0.0	-3.30	1.91	0.49	0.72	3.13	2720	360	10	0	0	0	0	logfile
✔	8AWT	15696	2024-09-23	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.006	0.55	0.0	0.04	10.29	0.00	2.287	0.00	0.00	2.9	97.1	0.0	-4.06	1.02	0.53	0.89	6.78	1910	260	20	0	10	0	0	logfile
✔	8oH2	16876	2024-09-23	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8TJV	41312	2024-09-25	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.56	0.01	1.106	11.00	0.00	0.0	0.0	0.0	—	0.91	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	8Ci8	16671	2024-09-23	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.004	0.63	0.0	0.04	16.74	0.00	2.608	9.06	6.93	1.1	98.9	0.0	-3.21	1.20	0.66	0.86	5.09	3430	485	25	0	0	0	0	logfile
✔	9EME	19818	2024-09-23	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.019	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.90	0.00	2.560	3.61	1.35	6.2	93.8	0.0	-3.04	1.18	0.49	0.82	5.35	4140	552	6	0	0	0	0	logfile
✔	8FAi	28957	2024-09-24	2022-11-27	3.0	2.58	3.05	2.7	0.011	1.63	0.0	0.04	15.88	0.00	2.395	4.13	0.00	0.0	100.0	0.0	3.16	0.53	0.80	3.27	2.6	0.004	0.64	0.0	0.04	15.87	0.00	2.225	5.64	6.67	0.1	99.9	0.0	3.84	2.69	0.54	0.83	1.88	7845	1020	25	0	15	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	9EZ8	50071	2024-09-28	2024-04-11	2.7	2.74	2.62	2.7	0.003	0.54	0.0	0.05	10.65	0.02	2.160	5.49	3.36	0.0	100.0	0.0	2.00	0.82	0.87	3.78	2.7	0.003	0.49	0.0	0.05	16.16	0.00	2.573	5.77	2.77	1.6	98.4	0.0	0.93	0.55	0.80	0.88	3.62	69480	9420	60	0	0	0	0	logfile

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