Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YCi	33740	2024-09-24	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.007	0.68	0.0	0.04	24.68	0.00	1.863	22.55	0.00	0.0	0.0	0.0	—	1.23	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7YCH	33739	2024-09-24	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.68	0.0	0.04	24.23	0.00	1.795	28.44	0.00	0.0	0.0	0.0	—	1.46	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	8HD6	34670	2024-09-24	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.007	0.76	0.0	0.04	24.78	0.01	1.771	18.56	0.00	0.0	0.0	0.0	—	2.23	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	6UET	20756	2024-09-23	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	27.49	0.01	2.150	47.53	0.00	0.0	0.0	0.0	—	0.74	0.66	0.80	—	3869	0	2	119	1	0	1291	logfile
✔	6UES	20755	2024-09-23	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.47	0.01	1.929	30.44	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7EZ0	31385	2024-09-24	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.61	0.0	0.03	23.75	0.00	1.904	6.34	0.00	0.0	0.0	0.0	—	2.04	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	8i7N	35223	2024-09-24	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	7R6L	24281	2024-09-24	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.57	0.01	1.906	6.18	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7R6M	24282	2024-09-24	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.53	0.01	1.758	13.47	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	8K0Q	36777	2024-09-29	2023-07-10	3.14	3.28	3.12	3.2	0.008	1.01	0.0	0.06	25.11	0.01	1.792	9.81	0.00	0.0	0.0	0.0	—	0.72	0.73	—	3.2	0.005	0.68	0.0	0.04	24.57	0.01	1.748	9.98	0.00	0.0	0.0	0.0	—	1.37	0.73	0.74	—	23586	0	6	1100	4	0	0	logfile
✔	8K0P	36776	2024-09-29	2023-07-10	2.99	3.19	3.07	3.1	0.008	0.99	0.0	0.06	24.97	0.01	1.792	8.78	0.00	0.0	0.0	0.0	—	0.73	0.80	—	3.1	0.006	0.73	0.0	0.04	24.65	0.01	1.835	8.35	0.00	0.0	0.0	0.0	—	1.24	0.75	0.83	—	23274	0	4	1084	4	0	0	logfile
✔	8UPT	42455	2024-09-23	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.73	0.0	0.04	27.67	0.01	2.090	18.78	0.00	0.0	0.0	0.0	—	0.98	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8K15	36786	2024-09-25	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.007	0.83	0.0	0.05	24.74	0.01	1.756	4.81	0.00	0.0	0.0	0.0	—	0.27	0.67	0.80	—	10093	0	2	470	2	0	0	logfile
✔	8K0S	36779	2024-09-29	2023-07-10	3.41	3.87	3.74	3.4	0.008	1.01	0.0	0.06	25.18	0.01	1.792	8.76	0.00	0.0	0.0	0.0	—	0.76	0.69	—	3.4	0.006	0.73	0.0	0.04	25.50	0.01	1.789	17.10	0.00	0.0	0.0	0.0	—	2.59	0.85	0.88	—	23312	0	4	1086	2	0	0	logfile
✔	7R6N	24283	2024-09-24	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	8K0R	36778	2024-09-29	2023-07-10	2.65	2.96	2.86	2.8	0.010	1.30	0.0	0.07	25.03	0.01	1.812	14.80	0.00	0.0	0.0	0.0	—	0.65	0.67	—	2.7	0.006	0.88	0.0	0.05	25.71	0.01	1.738	15.14	0.00	0.0	0.0	0.0	—	0.91	0.69	0.74	—	23506	0	6	1096	2	0	0	logfile
✔	7XSN	33428	2024-09-24	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.72	0.00	2.130	17.85	0.00	0.0	0.0	0.0	—	0.29	0.92	0.87	—	8279	0	1	387	0	0	0	logfile

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