Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KMF	22924	2024-09-29	2020-11-02	2.91	3.55	7.17	3.4	0.009	1.06	0.0	0.06	14.19	0.01	2.199	7.67	0.21	7.2	92.8	0.0	-2.57	0.75	0.80	3.64	3.4	0.004	0.69	0.0	0.05	15.75	0.00	2.290	9.96	2.10	5.7	94.3	0.0	-0.60	1.12	0.74	0.80	2.56	22875	3005	19	0	2	18	0	logfile
✔	8E1M	27825	2024-09-24	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.64	0.0	0.04	15.37	0.00	2.389	7.34	1.11	1.7	98.3	0.0	2.11	0.58	0.63	0.83	3.14	5691	760	7	0	2	0	0	logfile
✔	7AFD	11761	2024-09-28	2020-09-19	3.44	4.47	3.35	2.4	0.009	0.90	3.0	0.05	22.74	0.00	1.850	29.99	0.00	6.2	93.8	0.0	-2.70	0.89	0.85	0.96	2.2	0.005	0.74	0.0	0.04	22.59	0.00	1.866	18.88	2.71	4.4	95.5	0.1	-0.89	0.71	0.90	0.88	1.39	18531	1108	12	456	23	0	0	logfile
✔	7PW8	13678	2024-09-28	2021-10-06	2.82	2.88	—	2.9	0.005	0.75	4.0	0.16	14.19	0.00	2.086	3.97	0.18	3.4	96.6	0.0	1.21	0.74	0.85	2.97	2.9	0.003	0.54	0.0	0.04	15.66	0.00	1.993	2.98	1.94	2.7	97.3	0.0	2.05	0.42	0.74	0.89	2.81	18960	2434	8	0	199	0	0	logfile
✔	6UoX	20834	2024-09-25	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	14.59	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.72	0.0	0.04	12.15	0.00	2.415	6.53	0.00	5.9	94.1	0.0	-1.51	0.95	0.68	0.81	—	9138	1161	4	0	14	0	0	logfile
✔	7LKZ	23410	2024-09-27	2021-02-03	3.27	3.84	—	3.7	0.007	1.08	0.0	0.06	19.43	0.01	1.892	12.38	0.37	8.3	91.7	0.0	-1.26	0.74	0.83	1.92	3.7	0.003	0.80	0.0	0.04	17.39	0.00	1.988	6.45	2.44	5.8	94.2	0.0	0.05	1.10	0.74	0.84	1.37	15515	1920	4	0	26	0	0	logfile
✔	8EW3	28641	2024-09-26	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.10	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.59	0.0	0.04	13.49	0.00	1.058	4.66	0.64	2.5	97.5	0.0	1.53	1.18	0.75	0.89	3.30	11902	1540	9	0	5	0	0	logfile
✔	6U2J	20620	2024-09-28	2019-08-20	2.37	2.47	2.57	2.4	0.007	0.90	0.0	0.06	10.40	0.01	2.028	4.14	0.41	4.8	95.2	0.0	-3.36	0.79	0.83	4.12	2.4	0.005	0.73	0.0	0.05	14.52	0.00	2.477	6.81	2.18	4.2	95.8	0.0	-0.01	0.67	0.80	0.86	4.03	71744	9200	48	0	48	0	0	logfile
✔	7PW9	13679	2024-09-27	2021-10-06	3.12	3.26	—	3.2	0.004	0.67	0.0	0.16	15.15	0.00	2.021	5.77	0.07	3.3	96.6	0.0	1.77	0.73	0.79	1.98	3.3	0.002	0.53	0.0	0.04	15.29	0.00	1.937	3.94	1.35	3.0	97.0	0.0	2.43	1.73	0.74	0.83	1.97	16339	2066	7	0	199	0	0	logfile
✔	8EBY	28002	2024-09-29	2022-08-31	3.6	2.60	3.53	2.1	0.002	0.47	0.0	0.04	11.97	0.00	2.142	8.09	2.23	4.3	95.6	0.0	0.93	0.71	0.72	1.81	2.1	0.005	0.92	2.0	0.05	16.83	0.00	2.187	12.35	4.26	5.0	94.9	0.0	0.05	1.40	0.74	0.73	1.45	23709	2834	15	45	7	0	0	logfile
✔	8iXL	35795	2024-09-25	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	7TRS	26102	2024-09-24	2022-01-30	2.8	3.39	2.61	3.1	0.006	0.78	0.0	0.05	12.25	0.01	2.243	4.02	0.00	1.9	98.1	0.0	-1.09	0.71	0.83	3.37	3.1	0.003	0.73	0.0	0.04	15.28	0.00	2.504	7.21	1.98	2.5	97.5	0.0	1.04	1.06	0.71	0.84	3.18	8571	1121	6	0	1	0	0	logfile
✔	7AFH	11765	2024-09-28	2020-09-19	3.59	4.69	6.65	2.8	0.009	0.89	2.0	0.05	22.89	0.01	1.752	32.75	0.00	7.5	92.5	0.0	-2.59	0.88	0.82	0.54	2.8	0.010	0.99	0.0	0.05	22.98	0.01	1.644	32.87	3.16	7.1	92.9	0.0	-1.50	1.29	0.89	0.86	0.82	18482	1103	11	456	12	0	0	logfile
✔	7ZW1	14991	2024-09-26	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	4.0	0.002	0.50	0.0	0.04	17.45	0.00	2.450	4.74	1.89	3.4	96.6	0.0	3.09	0.72	0.65	0.80	1.33	11807	760	3	0	0	0	5883	logfile
✔	6N4Q	0341	2024-09-27	2018-11-20	3.6	4.01	3.86	4.0	0.008	1.03	0.0	0.06	10.17	0.01	2.288	3.98	0.11	7.9	92.1	0.0	-3.41	0.57	0.73	1.48	4.0	0.004	0.76	2.0	0.04	14.91	0.00	2.264	7.95	2.77	6.0	94.0	0.0	-0.54	0.79	0.57	0.74	1.23	16358	2052	12	0	0	0	0	logfile
✔	7L3N	23156	2024-09-30	2020-12-18	3.27	3.85	3.38	3.5	0.005	0.76	0.0	0.05	13.50	0.01	2.041	9.82	0.04	5.0	95.0	0.0	-0.76	0.75	0.70	0.74	3.6	0.004	0.68	0.0	0.05	15.17	0.00	2.517	8.54	2.06	3.1	96.9	0.0	0.30	0.94	0.82	0.85	2.11	24118	3056	11	0	22	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	6oLP	20118	2024-09-28	2019-04-16	4.2	4.36	4.20	4.2	0.009	1.13	0.0	0.07	15.44	0.01	2.224	7.16	0.57	11.7	88.3	0.0	-4.54	0.74	0.81	—	4.2	0.004	0.76	0.0	0.05	11.93	0.00	2.422	10.89	0.10	8.9	91.1	0.0	-2.44	0.71	0.74	0.82	—	18868	2182	40	0	126	0	0	logfile
✔	7ZGQ	14711	2024-09-26	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.35	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.003	0.60	0.0	0.05	16.88	0.00	2.564	9.54	3.31	6.8	93.2	0.0	-1.29	0.30	0.77	0.85	3.58	13704	1749	4	0	0	0	0	logfile
✔	8E2J	27838	2024-09-24	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile

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