Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V0Q	42866	2024-09-30	2023-11-17	3.9	4.16	3.93	4.1	0.004	0.82	0.0	0.06	14.49	0.01	2.279	3.47	0.00	4.7	95.3	0.0	-1.79	0.78	0.79	1.36	4.1	0.005	0.68	0.0	0.05	15.34	0.00	2.483	7.53	1.60	6.0	93.9	0.0	-0.64	0.44	0.79	0.81	1.22	24795	3105	12	0	42	0	0	logfile
✔	8RT9	19483	2024-09-28	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.69	0.0	0.04	16.54	0.00	2.363	9.76	1.93	1.7	98.3	0.0	2.96	0.71	0.69	0.87	2.61	17866	2395	10	0	0	0	0	logfile
✔	8RWK	19549	2024-09-27	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.6	0.004	0.65	0.0	0.05	16.25	0.00	2.361	5.60	2.08	3.0	97.0	0.0	0.77	2.41	0.74	0.78	2.31	15416	1980	8	0	4	0	0	logfile
✔	9BXR	45009	2024-09-24	2024-05-22	3.2	2.90	3.18	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.003	0.65	0.0	0.05	14.97	0.00	2.401	2.79	1.49	7.8	92.2	0.0	-2.71	1.27	0.38	0.78	2.73	7184	462	6	0	0	0	3656	logfile
✔	8V0P	42864	2024-09-30	2023-11-17	3.3	3.60	3.41	3.6	0.005	0.79	0.0	0.06	14.49	0.01	2.294	3.21	0.00	5.0	95.0	0.0	-1.57	0.70	0.78	2.54	3.6	0.002	0.54	0.0	0.04	15.16	0.00	2.422	4.69	1.44	4.3	95.7	0.0	-0.10	0.37	0.73	0.83	2.12	24925	3111	15	0	47	0	0	logfile
✔	8YF1	39207	2024-09-25	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile
✔	8GLU	40218	2024-09-26	2023-03-23	3.57	3.90	3.54	3.8	0.003	0.56	0.0	0.04	15.70	0.00	2.053	7.60	0.00	4.7	95.3	0.0	-0.89	0.70	0.75	1.26	3.8	0.005	0.67	0.0	0.04	17.00	0.00	1.891	7.89	1.90	6.2	93.8	0.0	-0.80	0.46	0.71	0.77	1.38	12338	1533	8	0	7	0	0	logfile
✔	8V0S	42868	2024-09-30	2023-11-17	3.3	3.50	3.36	3.5	0.005	0.88	0.0	0.06	14.64	0.01	2.264	4.97	0.00	9.4	90.5	0.1	-3.00	0.66	0.70	1.67	3.5	0.003	0.62	0.0	0.05	15.72	0.00	2.384	8.23	2.24	8.1	91.9	0.0	-2.06	0.40	0.68	0.74	1.47	24950	3126	12	0	37	0	0	logfile
✔	8R23	18834	2024-09-26	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.60	0.0	0.04	16.24	0.00	2.071	5.05	1.58	4.4	95.6	0.0	-0.32	0.42	0.80	0.84	1.20	11979	1548	4	0	2	0	0	logfile
✔	9AYW	44000	2024-09-30	2024-03-08	3.0	3.21	3.04	3.2	0.005	0.78	0.0	0.06	14.17	0.01	2.290	2.83	0.00	4.0	96.0	0.0	-0.76	0.68	0.81	3.01	3.2	0.003	0.55	0.0	0.04	15.84	0.00	2.507	4.03	1.77	2.8	97.2	0.0	0.47	1.57	0.69	0.84	2.98	24813	3123	6	0	30	0	0	logfile
✔	8SNo	40631	2024-09-23	2023-04-27	2.78	3.06	2.77	3.0	0.004	0.71	0.0	0.04	12.79	0.00	2.127	9.82	0.00	5.5	94.5	0.0	-0.11	0.64	0.83	2.65	3.1	0.004	0.59	0.0	0.04	15.79	0.00	2.292	4.64	2.06	4.5	95.5	0.0	0.54	1.27	0.63	0.86	2.39	5685	718	3	0	1	0	0	logfile
✔	8V0o	42863	2024-09-30	2023-11-17	3.3	3.45	3.42	3.5	0.005	0.77	1.0	0.06	14.09	0.01	2.264	2.93	0.00	4.7	95.3	0.1	-1.71	0.69	0.81	3.21	3.5	0.003	0.56	0.0	0.04	14.92	0.00	2.484	3.70	1.45	4.5	95.5	0.0	-0.22	0.33	0.70	0.84	2.90	24879	3105	15	0	48	0	0	logfile
✔	9F6L	50228	2024-09-25	2024-05-01	3.9	4.20	3.90	4.1	0.003	0.67	0.0	0.04	16.41	0.01	2.141	1.48	0.00	1.9	98.1	0.0	-1.02	0.75	0.80	1.37	4.1	0.002	0.61	0.0	0.04	17.93	0.00	2.339	4.32	1.11	1.5	98.5	0.0	1.49	0.69	0.76	0.82	0.71	9639	1118	4	26	3	0	0	logfile
✔	8V0V	42871	2024-09-30	2023-11-17	3.1	3.36	3.20	3.4	0.005	0.81	0.0	0.06	14.52	0.01	2.286	3.19	0.00	5.1	94.8	0.1	-1.56	0.63	0.79	2.60	3.4	0.004	0.59	0.0	0.04	15.26	0.00	2.426	3.98	1.47	4.8	95.1	0.1	-0.26	0.31	0.65	0.81	2.45	25051	3132	12	0	41	0	0	logfile
✔	8V0M	42861	2024-09-30	2023-11-17	3.2	3.44	3.28	3.5	0.007	0.93	0.0	0.05	14.11	0.01	1.974	3.26	0.00	5.3	94.7	0.0	-1.63	0.66	0.78	2.37	3.5	0.004	0.57	0.0	0.05	14.90	0.00	2.429	4.17	1.26	4.9	95.1	0.0	-0.65	0.39	0.66	0.80	2.23	24835	3105	15	0	44	0	0	logfile
✔	8ZWi	60528	2024-09-23	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.007	1.49	0.0	0.05	15.95	0.00	2.176	5.95	2.71	3.7	96.3	0.0	-2.07	0.90	0.43	0.87	5.55	2526	366	6	0	0	0	0	logfile
✔	8KDE	37133	2024-09-29	2023-08-09	2.6	2.45	—	3.0	0.007	1.18	0.0	0.04	17.45	0.01	2.069	4.73	0.00	3.8	96.0	0.2	1.46	0.81	0.84	3.51	3.0	0.004	0.62	1.0	0.04	16.11	0.00	2.200	7.42	1.01	3.4	96.4	0.1	1.82	0.33	0.81	0.86	3.02	22087	2344	28	0	72	0	0	logfile
✔	8KF6	37200	2024-09-23	2023-08-15	3.7	3.70	3.32	3.9	0.004	0.70	0.0	0.06	14.13	0.00	2.415	19.14	0.00	17.2	82.8	0.0	-5.74	0.34	0.84	6.36	3.9	0.004	0.72	0.0	0.06	16.32	0.00	2.607	8.66	4.57	17.2	82.8	0.0	-3.67	0.93	0.36	0.85	6.53	2175	297	9	0	0	0	0	logfile
✔	8V3Q	42950	2024-09-23	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	1.370	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.58	0.0	0.04	15.28	0.00	1.885	4.21	1.64	1.4	98.6	0.0	0.83	0.53	0.77	0.85	3.46	4030	503	4	0	9	0	0	logfile
✔	9GG0	51319	2024-09-23	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.58	0.0	0.05	15.92	0.00	2.577	2.45	1.47	2.2	97.8	0.0	-2.14	0.33	0.39	0.88	5.59	2385	321	3	0	0	0	0	logfile

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