Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Woo	32653	2024-09-27	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.005	0.90	1.0	0.05	16.63	0.01	2.312	15.63	2.85	9.2	90.5	0.3	-0.93	1.65	0.48	0.46	0.27	66949	8644	12	0	0	0	0	logfile
✔	8E1M	27825	2024-09-24	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.64	0.0	0.04	15.37	0.00	2.389	7.34	1.11	1.7	98.3	0.0	2.11	0.58	0.63	0.83	3.14	5691	760	7	0	2	0	0	logfile
✔	7AFD	11761	2024-09-28	2020-09-19	3.44	4.47	3.35	2.4	0.009	0.90	3.0	0.05	22.74	0.00	1.850	29.99	0.00	6.2	93.8	0.0	-2.70	0.89	0.85	0.96	2.2	0.005	0.74	0.0	0.04	22.59	0.00	1.866	18.88	2.71	4.4	95.5	0.1	-0.89	0.71	0.90	0.88	1.39	18531	1108	12	456	23	0	0	logfile
✔	7PW8	13678	2024-09-28	2021-10-06	2.82	2.88	—	2.9	0.005	0.75	4.0	0.16	14.19	0.00	2.086	3.97	0.18	3.4	96.6	0.0	1.21	0.74	0.85	2.97	2.9	0.003	0.54	0.0	0.04	15.66	0.00	1.993	2.98	1.94	2.7	97.3	0.0	2.05	0.42	0.74	0.89	2.81	18960	2434	8	0	199	0	0	logfile
✔	7PX9	13694	2024-09-29	2021-10-08	3.8	3.50	—	3.3	0.003	0.68	0.0	0.04	11.06	0.00	2.005	9.15	1.89	3.7	96.2	0.1	1.46	0.76	0.76	1.49	3.3	0.004	0.61	0.0	0.04	14.33	0.00	1.910	8.70	2.26	5.0	95.0	0.0	0.78	1.80	0.77	0.78	1.48	22194	2817	13	0	11	0	0	logfile
✔	7LKZ	23410	2024-09-27	2021-02-03	3.27	3.84	—	3.7	0.007	1.08	0.0	0.06	19.43	0.01	1.892	12.38	0.37	8.3	91.7	0.0	-1.26	0.74	0.83	1.92	3.7	0.003	0.80	0.0	0.04	17.39	0.00	1.988	6.45	2.44	5.8	94.2	0.0	0.05	1.10	0.74	0.84	1.37	15515	1920	4	0	26	0	0	logfile
✔	8EW3	28641	2024-09-26	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.10	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.59	0.0	0.04	13.49	0.00	1.058	4.66	0.64	2.5	97.5	0.0	1.53	1.18	0.75	0.89	3.30	11902	1540	9	0	5	0	0	logfile
✔	8CTG	26989	2024-09-23	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.90	0.0	0.04	6.99	0.01	2.359	5.06	3.45	11.0	88.7	0.3	-2.69	1.99	0.59	0.42	1.71	5100	1006	4	0	1	0	0	logfile
✔	8DFV	27415	2024-09-27	2022-06-22	3.06	3.24	3.07	3.2	0.010	1.15	0.0	0.06	16.02	0.01	2.206	10.04	0.00	9.7	90.0	0.3	-2.99	0.68	0.70	2.03	3.2	0.003	0.71	0.0	0.04	17.46	0.00	2.235	11.78	1.70	5.9	93.7	0.4	-0.46	0.64	0.68	0.70	1.00	16710	1917	5	60	10	0	0	logfile
✔	7LAA	23246	2024-09-23	2021-01-06	3.42	3.63	3.49	3.6	0.014	1.93	9.0	0.10	15.17	0.01	2.524	0.39	1.87	7.0	92.5	0.5	-2.08	0.66	0.70	2.85	3.6	0.005	0.72	0.0	0.05	14.67	0.00	2.247	6.83	1.99	7.8	92.2	0.0	-1.57	0.82	0.67	0.75	2.20	45934	3002	25	0	57	0	22222	logfile
✔	7NRi	12546	2024-09-29	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.63	2.0	0.05	14.47	0.00	1.984	3.89	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.003	0.53	0.0	0.04	15.41	0.00	2.388	2.20	1.11	4.0	96.0	0.0	-0.52	1.07	0.75	0.87	3.73	23151	1505	6	0	0	0	11359	logfile
✔	5oQJ	3846	2024-09-26	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.58	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.005	0.74	0.0	0.04	14.52	0.00	1.986	12.22	0.00	6.2	93.6	0.2	-0.26	1.11	0.84	0.81	—	62931	7649	55	148	557	0	0	logfile
✔	8E5P	27917	2024-09-28	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.51	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.002	0.66	0.0	0.04	12.32	0.00	1.507	11.63	0.00	2.2	97.8	0.0	1.02	1.57	0.86	0.78	—	20038	2502	13	8	18	0	0	logfile
✔	7ZW1	14991	2024-09-26	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	4.0	0.002	0.50	0.0	0.04	17.45	0.00	2.450	4.74	1.89	3.4	96.6	0.0	3.09	0.72	0.65	0.80	1.33	11807	760	3	0	0	0	5883	logfile
✔	7TTR	26121	2024-09-27	2022-02-01	2.96	3.21	—	3.2	0.009	1.08	1.0	0.08	13.73	0.01	1.788	6.35	0.30	4.4	95.4	0.2	1.27	0.60	0.69	3.46	3.2	0.004	0.83	1.0	0.04	16.78	0.00	1.717	8.10	1.64	3.9	96.1	0.1	1.01	0.73	0.76	0.88	3.21	15697	1912	12	0	23	0	0	logfile
✔	7L3N	23156	2024-09-30	2020-12-18	3.27	3.85	3.38	3.5	0.005	0.76	0.0	0.05	13.50	0.01	2.041	9.82	0.04	5.0	95.0	0.0	-0.76	0.75	0.70	0.74	3.6	0.004	0.68	0.0	0.05	15.17	0.00	2.517	8.54	2.06	3.1	96.9	0.0	0.30	0.94	0.82	0.85	2.11	24118	3056	11	0	22	0	0	logfile
✔	6VQ6	21317	2024-09-27	2020-02-04	3.9	4.53	—	4.2	0.009	0.95	1.0	0.06	10.96	0.00	1.809	2.38	0.30	2.6	97.2	0.3	0.63	0.77	0.71	1.23	4.2	0.005	0.88	0.0	0.05	14.76	0.00	1.872	18.09	2.08	3.8	96.2	0.0	1.15	1.80	0.81	0.82	0.92	62385	8454	35	0	2	0	0	logfile
✔	6VQ7	21318	2024-09-26	2020-02-04	4.0	4.63	—	4.2	0.009	0.98	2.0	0.06	10.86	0.01	2.219	3.67	0.61	2.5	97.3	0.2	0.65	0.79	0.72	—	4.3	0.004	0.85	0.0	0.05	14.36	0.00	1.924	16.45	1.84	3.4	96.6	0.0	1.44	1.45	0.82	0.80	—	62325	8454	35	0	2	0	0	logfile
✔	7ZGQ	14711	2024-09-26	2022-04-04	2.8	2.47	2.69	2.8	0.003	0.55	0.0	0.04	16.53	0.00	2.162	11.35	3.25	6.7	93.3	0.0	-1.11	0.77	0.85	3.25	2.8	0.003	0.60	0.0	0.05	16.88	0.00	2.564	9.54	3.31	6.8	93.2	0.0	-1.29	0.30	0.77	0.85	3.58	13704	1749	4	0	0	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile

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