Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WYi	37929	2024-10-09	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.003	0.84	0.0	0.04	19.03	0.00	2.361	10.47	6.88	11.0	88.1	0.9	-0.27	1.22	0.61	0.76	0.82	4659	589	8	0	0	0	0	logfile
✔	8UTM	42542	2024-10-13	2023-10-31	4.32	3.34	4.34	2.2	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.005	0.66	0.0	0.04	4.71	0.00	2.360	1.52	0.00	4.9	95.1	0.0	0.72	1.81	0.79	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	8UTF	42539	2024-10-11	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.59	0.0	0.05	15.98	0.00	2.491	3.53	2.24	1.5	98.5	0.0	1.36	1.46	0.77	0.86	2.95	9827	1248	15	0	9	134	0	logfile
✔	8UT7	42532	2024-10-12	2023-10-30	2.7	2.95	2.77	2.9	0.006	1.10	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.005	0.63	0.0	0.04	14.25	0.00	2.430	5.08	1.17	2.8	97.2	0.0	-0.12	0.82	0.68	0.86	4.95	13046	1460	11	0	257	0	0	logfile
✔	8WY0	37914	2024-10-09	2023-10-30	3.8	4.17	3.79	4.1	0.003	0.71	0.0	0.04	17.42	0.00	2.142	14.51	1.16	7.9	92.1	0.0	-1.58	0.50	0.67	1.59	4.1	0.003	0.83	0.0	0.04	17.82	0.00	2.540	11.10	6.76	7.2	92.8	0.0	-0.61	0.64	0.61	0.75	1.38	4656	587	9	0	1	0	0	logfile
✔	8USX	42522	2024-10-14	2023-10-30	4.1	4.33	4.14	4.1	0.003	0.62	0.0	0.04	11.31	0.00	2.167	9.14	0.21	6.8	92.6	0.5	0.07	0.65	0.63	—	4.1	0.004	0.66	0.0	0.05	11.33	0.00	2.373	8.13	0.00	7.1	92.4	0.5	0.05	0.94	0.66	0.64	—	17926	2967	4	0	0	0	0	logfile
✔	8UT6	42531	2024-10-12	2023-10-30	2.8	3.01	2.85	3.0	0.006	0.95	0.0	0.05	13.95	0.01	2.085	2.86	0.00	2.0	98.0	0.0	0.42	0.60	0.79	4.37	3.0	0.005	0.69	0.0	0.05	15.14	0.00	2.407	6.94	1.57	4.1	95.9	0.0	-0.37	1.10	0.61	0.80	4.45	13046	1460	11	0	257	0	0	logfile
✔	8QZX	18784	2024-10-12	2023-10-30	3.01	3.26	3.15	3.3	0.015	1.92	8.0	0.13	16.90	0.01	2.405	9.74	7.06	3.4	96.5	0.1	1.06	0.63	0.70	2.32	3.3	0.003	0.62	0.0	0.04	16.25	0.00	2.424	9.01	2.89	1.9	98.1	0.0	0.43	0.71	0.64	0.74	2.03	11708	1464	9	0	7	0	0	logfile
✔	8WY5	37916	2024-10-13	2023-10-30	3.12	3.34	3.15	3.4	0.006	1.18	1.0	0.07	18.38	0.01	2.380	2.95	0.18	5.0	94.5	0.5	-4.06	0.61	0.72	1.90	3.4	0.003	0.69	0.0	0.05	19.58	0.00	2.363	8.65	1.35	5.7	93.9	0.3	-1.15	1.03	0.65	0.76	1.98	16038	1770	12	76	4	0	0	logfile
✔	8UT9	42534	2024-10-12	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.16	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.6	0.005	1.00	0.0	0.05	15.48	0.00	1.947	9.48	2.85	4.0	96.0	0.0	-0.53	0.46	0.68	0.80	2.26	12707	1450	17	0	249	0	0	logfile
✔	8UT8	42533	2024-10-12	2023-10-30	3.2	3.53	3.40	3.5	0.007	1.15	0.0	0.06	13.81	0.01	2.087	3.28	0.00	3.0	97.0	0.0	0.10	0.66	0.76	2.65	3.6	0.004	0.71	0.0	0.04	15.60	0.00	2.438	10.10	2.77	4.6	95.3	0.1	-0.61	0.59	0.68	0.78	2.56	12707	1450	17	0	249	0	0	logfile
✔	8WXF	37905	2024-10-14	2023-10-29	4.0	4.27	4.10	4.2	0.003	0.71	0.0	0.05	17.29	0.01	2.188	15.21	0.75	4.8	95.1	0.1	-1.25	0.74	0.80	—	4.2	0.003	0.65	0.0	0.04	17.58	0.00	2.316	11.54	3.81	4.4	95.4	0.1	-0.45	0.37	0.78	0.81	—	16380	2190	3	0	0	0	0	logfile
✔	8WXE	37904	2024-10-09	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8USP	42510	2024-10-10	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.65	0.0	0.04	16.28	0.00	2.432	8.21	1.85	3.2	96.8	0.0	1.36	0.46	0.83	0.83	0.99	47406	5892	6	0	0	0	0	logfile
✔	8WX2	37898	2024-10-10	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.85	0.0	0.05	16.35	0.01	2.531	11.43	2.99	7.6	92.4	0.0	0.95	0.63	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✔	8WX5	37901	2024-10-09	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.004	0.76	0.0	0.04	16.95	0.00	2.543	12.05	2.99	6.2	93.8	0.0	0.72	1.01	0.52	0.81	1.19	3857	504	2	0	0	0	0	logfile
✔	8WX3	37899	2024-10-10	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.17	0.00	2.587	5.73	2.56	3.1	96.7	0.2	1.65	1.81	0.56	0.84	2.50	7498	974	2	0	0	0	0	logfile
✔	8WX4	37900	2024-10-10	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.55	0.0	0.04	15.15	0.00	2.578	5.39	2.04	2.5	97.5	0.0	1.43	1.31	0.57	0.82	2.42	7512	976	6	0	0	0	0	logfile
✔	8WX0	37896	2024-10-12	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.005	0.68	0.0	0.05	18.84	0.00	2.464	8.36	6.75	5.1	94.8	0.2	0.20	0.22	0.68	0.83	1.75	13672	1782	7	15	0	0	0	logfile
✔	8QYo	18760	2024-10-09	2023-10-26	2.84	3.26	2.99	3.2	0.006	0.66	0.0	0.05	13.09	0.00	2.208	3.23	0.02	2.6	97.4	0.0	0.66	0.75	0.84	3.57	3.2	0.002	0.52	0.0	0.04	16.11	0.00	2.478	3.44	1.68	1.7	98.3	0.0	1.47	0.33	0.74	0.84	2.93	47940	6174	28	0	0	0	0	logfile

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