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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EJH | 28182 | 2024-12-31 | 2022-09-16 | 3.71 | 4.24 | 3.87 | 4.0 | 0.021 | 1.83 | 0.0 | 0.15 | 17.28 | 0.01 | 2.321 | 2.57 | 0.00 | 5.7 | 94.3 | 0.0 | -0.18 | 0.78 | 0.78 | 2.12 | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 14.14 | 0.00 | 2.402 | 8.71 | 2.92 | 5.4 | 94.6 | 0.0 | -0.28 | 1.88 | 0.76 | 0.76 | 2.11 | 15186 | 1761 | 45 | 0 | 99 | 0 | 0 | logfile |
✔ | 8GVK | 32099 | 2024-12-27 | 2022-09-15 | 2.2 | 2.06 | 2.20 | 2.2 | 0.006 | 1.29 | 0.0 | 0.06 | 15.35 | 0.00 | 2.057 | 5.53 | 4.07 | 3.4 | 94.0 | 2.6 | -1.54 | 0.65 | 0.80 | 5.76 | 2.1 | 0.003 | 0.81 | 0.0 | 0.05 | 15.21 | 0.00 | 2.587 | 8.00 | 3.49 | 5.8 | 93.4 | 0.9 | -0.76 | 0.81 | 0.74 | 0.85 | 6.61 | 3567 | 476 | 8 | 0 | 0 | 19 | 0 | logfile |
✔ | 8EiJ | 28158 | 2024-12-28 | 2022-09-15 | 3.34 | 3.70 | 3.35 | 3.7 | 0.003 | 0.73 | 1.0 | 0.04 | 15.17 | 0.00 | 2.172 | 9.51 | 0.38 | 5.6 | 94.4 | 0.0 | -1.92 | 0.64 | 0.68 | 1.97 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.29 | 0.00 | 2.396 | 6.34 | 2.30 | 5.3 | 94.7 | 0.0 | -1.11 | 0.35 | 0.67 | 0.71 | 1.73 | 7813 | 1017 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 8EiT | 28164 | 2024-12-28 | 2022-09-15 | 2.8 | 2.89 | 2.85 | 3.0 | 0.004 | 0.68 | 0.0 | 0.05 | 13.35 | 0.01 | 2.230 | 3.89 | 0.11 | 1.8 | 98.2 | 0.0 | 1.13 | 0.72 | 0.82 | 2.63 | 2.9 | 0.003 | 0.65 | 0.0 | 0.04 | 16.06 | 0.00 | 2.410 | 7.84 | 2.66 | 2.6 | 97.4 | 0.0 | 1.65 | 0.42 | 0.73 | 0.85 | 2.57 | 8578 | 1123 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8EiK | 28159 | 2024-12-30 | 2022-09-15 | 3.19 | 3.52 | 3.30 | 3.4 | 0.003 | 0.69 | 1.0 | 0.05 | 15.51 | 0.00 | 2.133 | 8.72 | 0.39 | 6.4 | 93.6 | 0.0 | -1.62 | 0.66 | 0.68 | 1.48 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 15.97 | 0.00 | 2.190 | 6.05 | 2.32 | 4.6 | 95.4 | 0.0 | -0.65 | 0.42 | 0.67 | 0.71 | 1.36 | 13487 | 1809 | 13 | 0 | 12 | 0 | 0 | logfile |
✔ | 8GVF | 34292 | 2024-12-28 | 2022-09-15 | 3.09 | 3.29 | 3.08 | 3.3 | 0.005 | 0.64 | 0.0 | 0.04 | 14.00 | 0.01 | 2.306 | 4.41 | 0.11 | 3.9 | 95.8 | 0.3 | 0.79 | 0.66 | 0.83 | 2.36 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 15.45 | 0.00 | 2.496 | 3.68 | 1.37 | 3.6 | 96.2 | 0.2 | 1.63 | 0.27 | 0.60 | 0.82 | 1.97 | 8072 | 1022 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GVH | 34293 | 2024-12-30 | 2022-09-15 | 3.32 | 3.55 | 3.33 | 3.6 | 0.003 | 0.66 | 0.0 | 0.12 | 15.16 | 0.00 | 2.235 | 6.44 | 0.07 | 5.6 | 94.3 | 0.1 | -0.39 | 0.63 | 0.80 | 1.54 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.80 | 0.00 | 2.506 | 4.68 | 2.19 | 5.7 | 94.2 | 0.1 | 0.50 | 0.35 | 0.58 | 0.79 | 1.75 | 12602 | 1576 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EiR | 28162 | 2024-12-27 | 2022-09-15 | 2.49 | 3.15 | 2.50 | 3.0 | 0.005 | 0.81 | 0.0 | 0.05 | 16.40 | 0.01 | 1.960 | 4.05 | 2.61 | 2.2 | 97.4 | 0.3 | -1.27 | 0.86 | 0.84 | 4.26 | 3.0 | 0.003 | 0.60 | 0.0 | 0.04 | 16.09 | 0.00 | 2.612 | 3.11 | 1.12 | 2.4 | 97.6 | 0.0 | 0.04 | 0.57 | 0.84 | 0.91 | 4.30 | 4870 | 632 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Eii | 28157 | 2024-12-29 | 2022-09-15 | 3.12 | 3.48 | 3.13 | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 15.07 | 0.01 | 2.205 | 9.34 | 0.10 | 5.8 | 94.2 | 0.0 | -2.07 | 0.70 | 0.75 | 2.75 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 15.75 | 0.00 | 2.368 | 6.57 | 2.76 | 6.0 | 94.0 | 0.0 | -1.25 | 1.15 | 0.68 | 0.75 | 2.61 | 10451 | 1366 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 8EiH | 28156 | 2024-12-30 | 2022-09-15 | 3.04 | 3.30 | 3.11 | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 14.90 | 0.00 | 2.234 | 5.51 | 0.27 | 4.8 | 95.2 | 0.0 | -1.22 | 0.71 | 0.80 | 3.03 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.51 | 0.00 | 2.506 | 3.85 | 2.45 | 4.4 | 95.6 | 0.0 | -0.41 | 1.14 | 0.73 | 0.82 | 2.95 | 11674 | 1564 | 11 | 0 | 12 | 0 | 0 | logfile |
✔ | 8GVA | 34289 | 2024-12-28 | 2022-09-14 | 3.25 | 3.43 | 3.24 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.13 | 0.00 | 2.259 | 5.49 | 0.00 | 5.6 | 94.4 | 0.0 | -0.61 | 0.64 | 0.81 | 2.22 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 16.33 | 0.00 | 2.504 | 5.31 | 2.05 | 5.6 | 94.4 | 0.0 | 0.85 | 0.36 | 0.60 | 0.81 | 1.56 | 8072 | 1022 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EHR | 28150 | 2024-12-28 | 2022-09-14 | 3.2 | 2.95 | 3.03 | 3.1 | 0.003 | 0.55 | 0.0 | 0.05 | 13.08 | 0.00 | 2.374 | 2.29 | 0.00 | 0.0 | 100.0 | 0.0 | 1.82 | 0.58 | 0.85 | 3.24 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 15.66 | 0.00 | 2.559 | 3.78 | 2.56 | 0.9 | 99.1 | 0.0 | 1.13 | 1.16 | 0.58 | 0.87 | 3.59 | 7350 | 1022 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GUY | 34281 | 2024-12-31 | 2022-09-14 | 4.18 | 4.57 | 4.26 | 4.3 | 0.005 | 1.00 | 0.0 | 0.06 | 14.55 | 0.01 | 2.249 | 6.07 | 0.12 | 10.0 | 90.0 | 0.0 | -4.23 | 0.83 | 0.80 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 13.94 | 0.00 | 2.500 | 8.37 | 0.25 | 7.7 | 92.3 | 0.0 | -2.22 | 1.64 | 0.84 | 0.80 | — | 14222 | 1762 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GVC | 34290 | 2024-12-28 | 2022-09-14 | 2.89 | 3.10 | 2.90 | 3.2 | 0.002 | 0.48 | 0.0 | 0.04 | 14.66 | 0.00 | 1.670 | 13.40 | 1.14 | 2.0 | 97.8 | 0.2 | 2.06 | 0.64 | 0.82 | 2.43 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.95 | 0.01 | 2.561 | 3.86 | 1.25 | 3.2 | 96.7 | 0.1 | 1.89 | 0.32 | 0.62 | 0.83 | 2.75 | 8080 | 1022 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8GV9 | 34288 | 2024-12-30 | 2022-09-14 | 3.06 | 3.27 | 3.06 | 3.3 | 0.004 | 0.69 | 0.0 | 0.05 | 16.24 | 0.01 | 2.028 | 6.06 | 0.23 | 5.0 | 94.8 | 0.2 | -0.09 | 0.65 | 0.82 | 1.61 | 3.3 | 0.004 | 0.57 | 0.0 | 0.04 | 17.15 | 0.00 | 2.554 | 4.32 | 2.33 | 5.3 | 94.6 | 0.1 | 0.38 | 0.26 | 0.63 | 0.81 | 1.48 | 12170 | 1532 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EHX | 28154 | 2024-12-27 | 2022-09-14 | 3.6 | 3.90 | 3.67 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 17.02 | 0.01 | 2.214 | 13.59 | 0.00 | 8.5 | 91.3 | 0.2 | 0.14 | 0.58 | 0.79 | 0.78 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 17.71 | 0.00 | 2.601 | 8.68 | 3.74 | 6.6 | 93.3 | 0.2 | 1.21 | 1.53 | 0.56 | 0.78 | 1.01 | 5153 | 631 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EHW | 28153 | 2024-12-27 | 2022-09-14 | 3.8 | 4.10 | 3.62 | 4.0 | 0.006 | 0.97 | 1.0 | 0.05 | 16.57 | 0.01 | 2.239 | 16.20 | 0.18 | 8.3 | 91.7 | 0.0 | -0.97 | 0.58 | 0.76 | 1.15 | 4.1 | 0.004 | 0.83 | 0.0 | 0.05 | 17.26 | 0.00 | 2.598 | 14.27 | 4.56 | 5.0 | 95.0 | 0.0 | 0.42 | 0.57 | 0.59 | 0.77 | 1.17 | 5150 | 630 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EHS | 28151 | 2024-12-28 | 2022-09-14 | 3.3 | 2.87 | 3.21 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 14.12 | 0.00 | 2.082 | 3.04 | 0.00 | 1.3 | 98.7 | 0.0 | 1.50 | 0.54 | 0.80 | 3.22 | 3.3 | 0.005 | 0.62 | 0.0 | 0.05 | 15.71 | 0.00 | 2.497 | 5.21 | 3.37 | 1.3 | 98.7 | 0.0 | 0.20 | 0.48 | 0.54 | 0.83 | 2.78 | 7546 | 1015 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GV8 | 34287 | 2024-12-28 | 2022-09-14 | 3.08 | 3.29 | 3.09 | 3.3 | 0.019 | 1.93 | 51.0 | 0.09 | 14.99 | 0.01 | 1.614 | 6.04 | 3.97 | 5.6 | 93.7 | 0.7 | -0.32 | 0.63 | 0.82 | 2.59 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.36 | 0.01 | 2.523 | 4.01 | 1.93 | 2.5 | 97.5 | 0.0 | 1.10 | 1.25 | 0.60 | 0.82 | 2.34 | 8161 | 1027 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EHT | 28152 | 2024-12-28 | 2022-09-14 | 3.4 | 3.23 | 3.26 | 3.4 | 0.006 | 0.64 | 0.0 | 0.05 | 12.61 | 0.00 | 2.007 | 2.58 | 0.21 | 3.5 | 96.5 | 0.0 | -1.03 | 0.57 | 0.85 | 4.27 | 3.3 | 0.004 | 0.57 | 0.0 | 0.05 | 14.58 | 0.00 | 2.576 | 2.81 | 2.67 | 1.1 | 98.9 | 0.0 | 0.19 | 0.49 | 0.55 | 0.86 | 3.66 | 8554 | 1204 | 7 | 0 | 0 | 0 | 0 | logfile |