Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GUR	34277	2024-12-28	2022-09-13	2.84	2.28	2.92	2.0	0.002	0.50	0.0	0.04	13.74	0.00	2.131	7.78	0.00	2.1	97.9	0.0	0.31	0.75	0.75	2.85	2.0	0.004	0.63	0.0	0.04	16.51	0.00	2.536	9.14	2.06	2.6	97.4	0.0	0.30	1.10	0.77	0.79	2.46	8888	1139	6	0	1	0	0	logfile
✔	8EH5	28135	2024-12-27	2022-09-13	3.36	3.60	3.32	3.6	0.023	1.81	1.0	0.09	10.68	0.01	2.236	2.69	0.50	3.9	95.5	0.6	0.43	0.69	0.76	3.22	3.6	0.004	0.72	0.0	0.05	15.34	0.00	2.456	12.71	3.68	7.4	92.5	0.1	-0.37	0.90	0.67	0.76	2.36	5503	704	7	0	0	0	0	logfile
✔	8GUK	34275	2024-12-30	2022-09-12	2.51	3.12	2.54	2.9	0.004	0.60	0.0	0.04	29.88	0.00	2.202	10.18	3.15	1.7	98.3	0.0	2.28	0.85	0.85	3.27	2.9	0.004	0.61	0.0	0.04	29.79	0.00	2.511	8.25	4.26	1.7	98.3	0.0	2.46	0.21	0.83	0.86	2.83	12098	765	10	294	0	0	0	logfile
✔	8GUi	34274	2024-12-30	2022-09-12	2.81	3.24	2.87	3.1	0.004	0.58	0.0	0.04	27.52	0.00	2.109	9.47	0.13	2.6	97.4	0.0	1.95	0.86	0.86	3.13	3.1	0.005	0.64	0.0	0.04	28.29	0.00	2.144	9.96	2.48	3.8	96.2	0.0	2.08	0.35	0.87	0.88	2.52	13348	920	14	294	4	0	0	logfile
✔	8GUD	34273	2024-12-27	2022-09-11	2.62	2.98	2.83	3.1	0.008	0.79	0.0	0.05	14.85	0.01	2.116	20.31	0.00	6.0	94.0	0.0	-2.12	0.52	0.56	1.45	3.1	0.003	0.66	0.0	0.04	17.32	0.00	2.472	13.03	2.11	4.3	95.7	0.0	-0.84	1.59	0.48	0.56	1.18	6814	835	2	0	1	0	0	logfile
✔	8GUB	34272	2024-12-29	2022-09-11	2.73	2.94	2.83	3.0	0.008	0.62	0.0	0.04	14.43	0.00	1.994	34.45	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.004	0.60	0.0	0.04	17.01	0.00	2.503	7.05	2.44	2.9	97.1	0.0	0.62	0.49	0.66	0.78	3.37	10358	1253	3	0	1	0	0	logfile
✔	8GUA	34271	2024-12-28	2022-09-11	2.77	2.80	2.65	2.9	0.007	0.69	0.0	0.04	15.04	0.01	2.224	10.99	0.13	3.8	95.9	0.2	-0.79	0.53	0.61	2.00	2.9	0.003	0.64	0.0	0.04	17.15	0.01	2.497	11.70	1.79	4.4	95.5	0.1	-0.24	1.15	0.56	0.65	1.87	7017	855	2	0	1	0	0	logfile
✔	8GU6	34270	2024-12-31	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	18.66	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.56	0.0	0.04	18.58	0.00	2.545	9.67	3.98	6.3	93.7	0.0	-0.30	0.29	0.69	0.79	2.38	15261	1870	5	50	4	0	0	logfile
✔	8EG0	28108	2024-12-27	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	17.47	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.0	0.005	0.61	0.0	0.04	18.37	0.00	2.242	9.73	0.40	1.9	98.1	0.0	1.51	0.57	0.91	0.86	1.84	6031	584	4	65	0	0	0	logfile
✔	8EFV	28101	2024-12-31	2022-09-09	2.97	3.23	3.08	3.2	0.003	0.58	0.0	0.04	17.04	0.00	2.016	7.13	0.00	4.2	95.8	0.0	0.76	0.70	0.83	1.98	3.2	0.003	0.62	0.0	0.04	18.73	0.01	2.031	6.90	1.02	4.1	95.9	0.0	1.32	0.32	0.66	0.83	1.55	15295	1821	14	42	10	0	0	logfile
✔	8GTN	34258	2024-12-27	2022-09-08	3.17	3.63	3.40	3.5	0.003	0.54	0.0	0.04	11.93	0.00	2.208	15.34	1.50	0.9	99.1	0.0	-1.98	0.72	0.73	1.09	3.5	0.006	0.78	0.0	0.05	15.08	0.00	2.559	14.48	1.93	4.6	95.4	0.0	-1.93	1.37	0.73	0.75	1.07	48303	5859	27	0	0	0	0	logfile
✔	8EFL	28085	2024-12-30	2022-09-08	3.2	3.35	3.03	3.4	0.005	0.87	0.0	0.07	8.53	0.01	2.259	3.59	0.00	1.1	98.9	0.0	0.35	0.62	0.77	2.84	3.3	0.004	0.58	0.0	0.04	13.01	0.00	2.513	5.62	2.77	1.6	98.4	0.0	1.79	1.23	0.63	0.83	2.46	11750	1446	9	0	12	0	0	logfile
✔	8EF6	28069	2024-12-30	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	8.21	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.003	0.56	0.0	0.04	12.68	0.00	2.568	6.28	1.67	1.4	98.6	0.0	2.02	1.28	0.60	0.81	2.60	11686	1439	9	0	12	0	0	logfile
✔	8EFE	28081	2024-12-28	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.003	0.62	0.0	0.04	16.18	0.00	1.907	8.86	0.91	4.5	95.5	0.0	0.85	0.48	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	8EFB	28077	2024-12-28	2022-09-08	3.2	3.04	3.02	3.2	0.005	0.91	0.0	0.06	8.31	0.01	2.247	4.66	0.00	1.8	98.2	0.0	1.18	0.61	0.75	2.06	3.2	0.002	0.58	0.0	0.04	14.50	0.00	2.545	6.46	2.35	1.8	98.2	0.0	1.31	1.32	0.63	0.82	2.69	8947	1136	6	0	1	0	0	logfile
✔	8EFD	28080	2024-12-28	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.003	0.64	0.0	0.04	15.99	0.00	2.536	9.73	1.17	4.2	95.8	0.0	0.59	0.56	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile
✔	8GTS	34266	2024-12-31	2022-09-08	3.87	4.34	4.09	4.3	0.003	0.67	0.0	0.04	14.16	0.00	2.029	10.79	0.42	2.5	97.5	0.0	0.49	0.56	0.71	1.72	4.3	0.003	0.70	0.0	0.04	16.07	0.00	2.519	7.12	2.97	3.8	96.2	0.0	1.04	0.40	0.56	0.72	1.32	15470	2016	7	0	0	0	0	logfile
✔	8GTT	34267	2024-12-31	2022-09-08	3.2	3.45	3.24	3.5	0.003	0.64	0.0	0.04	17.61	0.00	2.028	7.53	0.58	3.0	97.0	0.0	0.85	0.66	0.78	2.51	3.5	0.003	0.66	0.0	0.04	17.79	0.00	2.572	6.85	3.59	3.7	96.3	0.0	1.31	0.91	0.66	0.80	2.78	16247	2121	7	0	0	0	0	logfile
✔	8EFo	28086	2024-12-30	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	9.17	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.004	0.65	0.0	0.04	14.54	0.00	2.406	9.55	2.94	1.8	98.2	0.0	1.45	1.32	0.62	0.83	2.91	11708	1441	9	0	12	0	0	logfile
✔	8EFQ	28088	2024-12-28	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	3.6	0.003	0.61	0.0	0.04	14.43	0.00	2.526	7.38	3.75	2.1	97.9	0.0	0.58	2.49	0.63	0.78	1.40	7046	892	7	0	2	0	0	logfile

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