Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GTT	34267	2024-12-31	2022-09-08	3.2	3.45	3.24	3.5	0.003	0.64	0.0	0.04	17.61	0.00	2.028	7.53	0.58	3.0	97.0	0.0	0.85	0.66	0.78	2.51	3.5	0.003	0.66	0.0	0.04	17.79	0.00	2.572	6.85	3.59	3.7	96.3	0.0	1.31	0.91	0.66	0.80	2.78	16247	2121	7	0	0	0	0	logfile
✔	8B0K	15786	2024-12-27	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.60	0.0	0.04	13.13	0.00	2.591	6.23	2.26	3.9	96.1	0.0	0.99	0.88	0.57	0.84	4.41	3830	492	1	0	0	0	0	logfile
✔	8B0P	15791	2024-12-27	2022-09-07	2.86	3.13	2.92	3.1	0.003	0.55	2.0	0.34	12.11	0.01	2.235	5.12	0.97	3.2	96.6	0.2	-0.43	0.58	0.84	4.71	3.1	0.003	0.57	0.0	0.04	14.24	0.00	2.587	6.25	0.97	3.4	96.6	0.0	0.59	0.90	0.57	0.84	4.22	4016	510	3	0	1	0	0	logfile
✔	8B0L	15787	2024-12-28	2022-09-07	3.13	3.53	3.20	3.4	0.003	0.67	0.0	0.04	10.82	0.00	2.270	7.86	0.48	4.5	95.5	0.0	1.39	0.56	0.84	4.51	3.4	0.003	0.58	0.0	0.04	13.94	0.00	2.498	7.86	2.16	4.9	95.1	0.0	1.11	0.93	0.55	0.85	3.91	4033	510	2	0	1	0	0	logfile
✔	8B0M	15788	2024-12-28	2022-09-07	3.01	3.39	3.03	3.3	0.003	0.66	0.0	0.04	11.18	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.003	0.58	0.0	0.04	13.74	0.00	2.561	5.92	2.64	5.9	94.1	0.0	0.67	1.69	0.59	0.86	3.53	4015	508	2	0	1	0	0	logfile
✔	8B0A	15777	2024-12-31	2022-09-07	3.0	4.03	3.06	3.3	0.008	0.96	0.0	0.07	23.86	0.01	2.331	0.99	0.58	2.7	96.9	0.4	-0.03	0.91	0.88	3.22	3.2	0.004	0.69	0.0	0.04	25.72	0.00	2.341	6.90	1.16	2.1	97.8	0.2	2.10	1.39	0.92	0.90	1.80	15843	1222	11	298	0	0	0	logfile
✔	8GSZ	34244	2024-12-27	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.73	0.0	0.04	17.80	0.00	2.346	10.29	3.10	2.7	97.3	0.0	-0.82	0.77	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	8GT6	34245	2024-12-27	2022-09-07	3.47	3.69	3.52	3.6	0.011	1.13	0.0	0.06	16.02	0.01	2.322	9.92	0.77	5.1	94.9	0.0	-4.60	0.63	0.82	2.34	3.6	0.003	0.83	0.0	0.05	16.82	0.00	2.505	8.28	2.12	3.9	96.1	0.0	-0.21	0.67	0.63	0.83	2.20	4922	618	3	0	1	0	0	logfile
✔	8B0F	15779	2024-12-30	2022-09-07	3.0	3.33	3.08	3.1	0.004	0.75	0.0	0.05	14.81	0.01	2.067	4.43	1.40	7.8	92.2	0.0	-1.39	0.81	0.81	3.23	3.1	0.004	0.64	0.0	0.04	15.05	0.00	2.061	3.59	0.88	5.0	95.0	0.0	-0.26	1.36	0.81	0.81	3.08	60654	3910	12	0	9	0	29718	logfile
✔	8B0N	15789	2024-12-28	2022-09-07	2.67	2.99	2.76	3.0	0.004	0.57	0.0	0.04	10.45	0.00	2.267	5.50	0.00	3.4	96.6	0.0	0.75	0.57	0.86	5.58	3.0	0.003	0.57	0.0	0.04	13.29	0.00	2.584	3.87	0.74	3.8	96.2	0.0	1.03	0.31	0.56	0.87	4.41	4004	510	2	0	1	0	0	logfile
✔	8AZS	15770	2024-12-28	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.9	0.067	7.11	334.0	0.36	33.36	0.06	1.184	531.56	18.22	38.7	26.2	35.1	-8.96	18.83	0.17	0.13	-0.09	9036	1224	36	0	0	0	0	logfile
✔	8EEB	28050	2024-12-31	2022-09-06	3.9	4.36	3.88	4.0	0.003	0.66	0.0	0.05	15.26	0.00	2.221	9.09	0.00	3.4	96.6	0.0	0.48	0.73	0.80	1.42	4.0	0.002	0.70	0.0	0.04	15.50	0.00	2.538	8.68	0.85	3.3	96.7	0.0	0.59	0.95	0.73	0.81	1.31	14672	1873	7	0	16	0	0	logfile
✔	8GSE	34233	2024-12-28	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.003	0.55	0.0	0.04	15.70	0.00	2.554	4.44	1.21	4.2	95.8	0.0	-1.27	1.40	0.41	0.84	2.47	7474	952	5	0	0	0	0	logfile
✔	8EDX	28042	2024-12-31	2022-09-06	2.81	2.99	2.70	2.9	0.006	0.60	0.0	0.05	15.44	0.00	2.378	5.42	0.71	4.7	95.3	0.0	-2.86	0.78	0.92	5.20	2.9	0.005	0.58	0.0	0.04	16.08	0.00	2.486	4.79	2.54	1.9	98.1	0.0	-0.84	0.35	0.78	0.92	5.09	16074	2088	6	0	0	0	0	logfile
✔	8GSo	34237	2024-12-29	2022-09-06	3.3	3.69	3.38	3.7	0.013	1.66	18.0	0.11	25.12	0.01	1.194	20.44	41.49	17.0	76.3	6.7	-5.21	0.57	0.72	1.47	3.7	0.004	0.84	0.0	0.04	18.12	0.01	2.392	12.56	4.69	12.6	87.1	0.4	-0.37	1.35	0.56	0.84	1.82	10624	1322	2	0	0	0	0	logfile
✔	8B01	15775	2024-12-27	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.53	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	0.53	0.0	0.04	15.19	0.00	2.321	2.29	1.75	1.9	98.1	0.0	2.62	0.99	0.71	0.87	2.80	5478	684	5	0	15	0	0	logfile
✔	8AZK	15767	2024-12-27	2022-09-06	3.1	3.41	3.18	3.4	0.006	0.59	0.0	0.04	14.86	0.00	1.998	6.10	1.46	9.2	90.8	0.0	-3.78	0.76	0.83	2.88	3.4	0.005	0.78	2.0	0.05	16.58	0.00	2.129	5.45	2.11	5.4	94.6	0.0	-0.60	1.07	0.77	0.86	2.40	46965	6222	28	0	0	0	0	logfile
✔	8AZ4	15753	2024-12-27	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.004	0.72	0.0	0.05	13.37	0.00	2.655	1.89	1.25	7.7	92.3	0.0	-4.01	0.49	0.59	0.91	7.97	2280	280	30	0	10	100	0	logfile
✔	8AZA	15757	2024-12-27	2022-09-05	3.15	4.29	3.15	3.5	0.004	0.76	1.0	0.05	17.83	0.01	2.202	26.58	0.73	4.9	95.1	0.0	-0.75	0.83	0.67	0.65	3.5	0.004	0.79	0.0	0.05	18.12	0.01	2.489	19.94	2.94	5.1	94.9	0.0	-0.49	0.65	0.84	0.71	0.65	4970	606	4	0	1	0	0	logfile
✔	8AZ0	15728	2024-12-27	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	3.6	0.003	0.51	0.0	0.04	11.54	0.00	2.272	0.24	2.08	5.8	94.2	0.0	-5.01	0.50	0.46	0.85	4.92	2180	280	20	0	10	0	0	logfile

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