Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZA	15757	2024-12-27	2022-09-05	3.15	4.29	3.15	3.5	0.004	0.76	1.0	0.05	17.83	0.01	2.202	26.58	0.73	4.9	95.1	0.0	-0.75	0.83	0.67	0.65	3.5	0.004	0.79	0.0	0.05	18.12	0.01	2.489	19.94	2.94	5.1	94.9	0.0	-0.49	0.65	0.84	0.71	0.65	4970	606	4	0	1	0	0	logfile
✔	8AZ6	15755	2024-12-27	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.006	0.63	0.0	0.04	14.10	0.00	2.223	2.58	4.74	5.7	94.3	0.0	-4.92	0.78	0.51	0.87	6.66	3420	460	40	0	20	0	0	logfile
✔	8AZ2	15730	2024-12-27	2022-09-05	3.4	3.30	3.43	3.7	0.003	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.007	0.66	0.0	0.05	11.59	0.00	2.330	2.11	1.56	3.8	96.2	0.0	-2.99	0.47	0.49	0.87	6.08	2935	395	30	0	15	0	0	logfile
✔	8AZ0	15728	2024-12-27	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	3.6	0.003	0.51	0.0	0.04	11.54	0.00	2.272	0.24	2.08	5.8	94.2	0.0	-5.01	0.50	0.46	0.85	4.92	2180	280	20	0	10	0	0	logfile
✔	8GS8	34225	2024-12-29	2022-09-05	2.86	3.07	2.83	3.1	0.032	1.67	0.0	0.52	14.96	0.01	2.168	12.06	0.67	7.9	92.1	0.1	-4.22	0.62	0.84	3.93	3.1	0.004	1.08	0.0	0.06	16.19	0.00	1.805	7.69	1.00	2.5	97.5	0.0	0.91	0.83	0.62	0.86	3.59	8637	1090	8	0	7	0	0	logfile
✔	8EDN	28037	2024-12-27	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.63	0.0	0.04	13.94	0.00	2.509	7.58	1.84	4.3	95.5	0.2	2.35	1.13	0.70	0.72	1.96	3683	579	1	0	0	0	0	logfile
✔	8EDM	28036	2024-12-27	2022-09-05	3.6	3.02	3.55	3.0	0.002	0.44	0.0	0.04	9.61	0.00	2.271	3.02	0.00	3.2	96.8	0.0	2.82	0.64	0.66	2.16	3.0	0.003	0.53	0.0	0.04	11.85	0.00	2.544	1.51	4.48	3.2	96.8	0.0	2.33	1.82	0.68	0.74	2.02	2509	442	2	0	0	0	0	logfile
✔	8AZ4	15753	2024-12-27	2022-09-05	2.2	2.27	2.10	2.2	0.006	0.72	0.0	0.05	10.22	0.00	2.292	1.89	0.00	7.7	92.3	0.0	-3.94	0.57	0.88	8.31	2.2	0.004	0.72	0.0	0.05	13.37	0.00	2.655	1.89	1.25	7.7	92.3	0.0	-4.01	0.49	0.59	0.91	7.97	2280	280	30	0	10	100	0	logfile
✔	8AZ7	15756	2024-12-27	2022-09-05	2.9	3.01	2.82	2.9	0.003	0.51	0.0	0.04	8.79	0.00	2.665	3.88	0.00	4.0	96.0	0.0	-3.51	0.53	0.83	4.58	2.9	0.007	0.80	0.0	0.05	12.24	0.00	2.270	3.49	1.36	8.0	92.0	0.0	-3.83	0.68	0.51	0.90	4.96	4010	540	40	0	20	0	0	logfile
✔	8GSB	34228	2024-12-27	2022-09-05	3.99	4.17	3.86	4.1	0.004	0.73	0.0	0.05	13.34	0.01	2.338	6.14	0.00	8.4	91.3	0.3	-1.84	0.73	0.81	2.48	4.1	0.004	0.74	0.0	0.04	15.42	0.00	2.501	9.86	2.62	7.7	92.3	0.0	-1.50	0.56	0.74	0.83	2.25	3157	400	3	0	0	0	0	logfile
✔	8GS9	34226	2024-12-27	2022-09-05	2.66	2.88	2.77	2.9	0.003	0.55	0.0	0.04	11.98	0.00	2.297	3.11	0.60	5.6	93.8	0.5	-0.51	0.61	0.71	2.97	2.9	0.004	0.73	0.0	0.05	16.27	0.00	2.557	6.06	4.48	3.1	96.9	0.0	-0.82	0.82	0.63	0.75	2.50	3116	396	3	0	0	0	0	logfile
✔	8EDo	28038	2024-12-27	2022-09-05	3.4	3.18	3.36	3.1	0.004	0.61	0.0	0.04	11.35	0.00	2.288	6.16	0.00	4.3	95.5	0.1	2.05	0.68	0.76	2.87	3.1	0.002	0.54	0.0	0.04	13.39	0.00	2.541	3.48	2.30	4.1	95.9	0.0	3.28	0.36	0.68	0.77	1.67	4465	751	2	0	0	0	0	logfile
✔	8EDL	28035	2024-12-27	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.2	0.002	0.58	0.0	0.03	13.54	0.00	2.509	5.85	2.31	2.6	97.4	0.0	3.49	1.13	0.68	0.73	2.23	2470	395	1	0	0	0	0	logfile
✔	8GS3	34219	2024-12-31	2022-09-04	3.9	3.16	3.68	3.0	0.013	1.32	0.0	0.05	15.90	0.01	1.810	20.53	0.00	3.5	96.5	0.0	0.27	0.83	0.75	1.57	3.0	0.013	1.32	0.0	0.05	15.94	0.01	1.812	21.50	0.11	3.5	96.5	0.0	0.27	0.05	0.83	0.76	1.57	8376	1067	2	0	0	0	0	logfile
✔	8GS4	34220	2024-12-28	2022-09-04	3.5	3.66	3.52	3.7	0.004	0.83	0.0	0.05	13.58	0.01	2.031	11.71	0.00	13.3	86.7	0.0	-4.70	0.69	0.75	2.42	3.7	0.005	0.81	0.0	0.05	15.86	0.01	2.544	8.93	3.22	12.8	87.2	0.0	-3.40	1.01	0.68	0.75	1.45	8250	1050	2	0	0	0	0	logfile
✔	8GRY	34217	2024-12-28	2022-09-03	3.29	2.52	3.34	2.2	0.003	0.58	0.0	0.04	16.15	0.00	2.001	6.11	0.14	4.7	95.3	0.0	0.44	0.75	0.76	2.64	2.1	0.003	0.64	0.0	0.04	17.53	0.00	1.988	5.32	1.15	3.9	96.1	0.0	0.56	1.40	0.77	0.80	2.46	6444	792	4	0	2	0	0	logfile
✔	8ED0	28026	2024-12-31	2022-09-02	2.72	2.93	2.52	2.9	0.007	0.75	1.0	0.05	14.42	0.01	2.201	6.70	0.18	3.9	95.5	0.6	-2.14	0.75	0.91	5.72	2.9	0.010	0.77	0.0	0.05	15.54	0.01	2.417	6.04	2.30	3.7	96.3	0.0	-0.56	0.35	0.78	0.92	5.36	16074	2088	6	0	0	0	0	logfile
✔	8GRN	34209	2024-12-30	2022-09-02	2.5	3.22	2.91	3.2	0.033	3.22	177.0	0.26	23.95	0.02	1.842	20.38	36.57	14.8	77.8	7.4	-5.62	0.54	0.70	2.38	3.2	0.004	0.86	0.0	0.05	19.06	0.01	2.262	8.03	3.24	9.9	89.9	0.1	-0.21	0.97	0.44	0.70	2.38	11602	1432	4	0	2	0	0	logfile
✔	8GRS	34214	2024-12-27	2022-09-02	3.3	3.91	3.48	3.8	0.016	1.94	6.0	0.13	26.31	0.02	1.285	16.08	44.03	21.3	72.9	5.8	-5.46	0.61	0.72	1.86	3.8	0.004	0.89	0.0	0.04	18.97	0.01	2.301	14.63	7.31	12.2	87.5	0.3	-1.05	1.95	0.50	0.80	1.52	5148	626	2	0	1	0	0	logfile
✔	8GRo	34210	2024-12-29	2022-09-02	3.5	3.98	3.66	3.9	0.013	1.67	17.0	0.11	25.25	0.01	1.194	18.95	41.49	16.3	77.1	6.6	-5.21	0.60	0.74	1.94	3.9	0.004	0.87	0.0	0.04	18.78	0.01	2.467	13.71	4.86	11.3	88.4	0.3	-0.52	1.30	0.57	0.81	1.54	10624	1322	2	0	0	0	0	logfile

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