Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GRX	34216	2024-12-28	2022-09-02	3.0	3.20	2.99	3.2	0.007	1.26	0.0	0.05	12.30	0.00	2.019	6.41	0.22	3.5	96.2	0.4	-0.43	0.72	0.81	3.45	3.2	0.003	0.54	0.0	0.04	15.47	0.01	2.501	5.19	1.35	2.2	97.8	0.0	2.13	0.59	0.74	0.84	3.61	8328	1056	4	0	0	0	0	logfile
✔	8AYN	15717	2024-12-31	2022-09-02	2.8	2.38	2.63	2.8	0.012	1.21	0.0	0.05	16.28	0.00	2.003	5.50	0.00	3.9	96.1	0.0	0.76	0.68	0.80	3.90	2.8	0.004	0.58	0.0	0.04	16.42	0.00	2.540	5.69	1.84	2.1	97.9	0.0	1.09	1.17	0.63	0.81	3.44	15748	1998	12	0	28	0	0	logfile
✔	8AYM	15716	2024-12-31	2022-09-02	3.3	3.18	3.15	3.4	0.008	1.27	0.0	0.04	17.62	0.00	2.075	1.59	0.13	2.5	97.5	0.0	-0.77	0.69	0.77	2.81	3.4	0.003	0.52	0.0	0.04	16.50	0.00	2.396	4.66	1.66	2.0	98.0	0.0	1.45	0.66	0.71	0.84	2.54	15962	2008	12	0	28	0	0	logfile
✔	8GRN	34209	2024-12-30	2022-09-02	2.5	3.22	2.91	3.2	0.033	3.22	177.0	0.26	23.95	0.02	1.842	20.38	36.57	14.8	77.8	7.4	-5.62	0.54	0.70	2.38	3.2	0.004	0.86	0.0	0.05	19.06	0.01	2.262	8.03	3.24	9.9	89.9	0.1	-0.21	0.97	0.44	0.70	2.38	11602	1432	4	0	2	0	0	logfile
✔	8EBP	27995	2024-12-30	2022-08-31	3.38	3.98	3.43	3.7	0.004	0.63	0.0	0.05	12.80	0.00	2.126	7.78	0.00	7.1	92.9	0.1	-1.69	0.88	0.85	2.19	3.7	0.003	0.63	0.0	0.04	14.52	0.00	2.521	6.98	0.74	6.3	93.6	0.1	-0.90	0.38	0.88	0.87	1.85	13230	1752	6	0	0	0	0	logfile
✔	8AXA	15697	2024-12-28	2022-08-31	2.96	3.56	2.99	3.1	0.003	0.57	0.0	0.03	23.95	0.01	2.143	11.47	0.49	6.3	93.7	0.0	0.01	0.82	0.76	2.74	3.1	0.003	0.59	0.0	0.03	23.72	0.00	2.002	10.96	2.91	6.1	93.9	0.0	0.36	0.37	0.83	0.78	2.51	9142	465	6	253	0	3	0	logfile
✔	8AXK	15700	2024-12-26	2022-08-31	4.05	4.12	3.79	4.1	0.002	0.46	0.0	0.04	10.52	0.00	2.167	6.25	3.27	5.0	95.0	0.0	3.62	0.41	0.83	—	4.1	0.003	0.71	0.0	0.04	13.24	0.00	2.355	9.20	0.10	5.1	94.9	0.0	2.83	1.59	0.41	0.82	—	44141	5608	85	0	0	0	0	logfile
✔	8AXB	15698	2024-12-28	2022-08-31	2.87	3.44	2.88	3.1	0.004	0.62	0.0	0.03	23.87	0.01	2.036	18.05	0.53	5.9	94.1	0.0	-0.94	0.79	0.71	1.53	3.1	0.003	0.61	0.0	0.03	23.56	0.00	2.054	14.50	2.38	3.3	96.7	0.0	0.19	0.55	0.79	0.73	1.07	8383	430	3	230	0	2	0	logfile
✔	8GQY	34203	2024-12-29	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.004	0.93	1.0	0.04	15.20	0.00	2.180	6.05	2.99	1.7	98.3	0.0	-0.80	1.06	0.65	0.85	2.06	9515	1265	5	0	0	0	0	logfile
✔	8EAY	27990	2024-12-29	2022-08-30	3.33	3.56	3.21	3.6	0.008	1.14	4.0	0.09	14.18	0.01	2.243	5.38	0.76	9.5	90.1	0.3	-2.33	0.58	0.63	1.83	3.6	0.003	0.61	0.0	0.04	15.40	0.00	2.198	6.01	2.27	9.9	90.0	0.2	-2.08	1.22	0.62	0.71	2.23	9479	626	3	0	0	0	4718	logfile
✔	8GQD	34200	2024-12-30	2022-08-30	3.41	3.57	3.38	3.6	0.008	1.10	1.0	0.06	18.05	0.01	2.168	3.84	5.20	12.9	87.1	0.0	-4.94	0.64	0.62	0.89	3.6	0.003	0.76	0.0	0.04	18.53	0.00	2.505	9.35	3.09	9.5	90.5	0.0	-1.87	0.83	0.68	0.66	0.33	12644	1576	12	0	4	0	0	logfile
✔	8AWT	15696	2024-12-27	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.006	0.55	0.0	0.04	10.29	0.00	2.287	0.00	0.00	2.9	97.1	0.0	-4.06	1.02	0.53	0.89	6.78	1910	260	20	0	10	0	0	logfile
✔	8AW3	15690	2024-12-27	2022-08-29	3.6	4.37	3.68	3.7	0.008	1.10	3.0	0.08	20.77	0.01	1.874	11.98	2.12	5.9	94.1	0.0	-1.95	0.79	0.65	2.69	3.7	0.003	0.64	0.0	0.04	20.62	0.00	1.863	12.63	2.12	3.8	96.2	0.0	-0.99	0.76	0.86	0.81	1.89	5059	456	5	73	2	0	0	logfile
✔	8AW5	15691	2024-12-28	2022-08-29	2.8	2.88	2.63	2.9	0.017	1.76	3.0	0.07	18.38	0.04	2.427	8.09	0.43	4.6	95.0	0.4	0.42	0.70	0.85	3.73	2.9	0.004	0.65	0.0	0.04	17.88	0.00	2.504	7.40	1.88	2.9	96.7	0.4	2.87	1.39	0.70	0.88	3.81	7023	798	6	0	12	0	0	logfile
✔	8AVX	15686	2024-12-28	2022-08-27	3.5	3.71	3.49	3.7	0.008	1.38	0.0	0.08	17.71	0.01	2.316	1.69	4.23	4.5	95.2	0.2	-4.05	0.69	0.67	0.44	3.7	0.003	0.73	0.0	0.04	17.93	0.00	2.483	7.51	3.97	3.3	96.7	0.0	-0.69	1.21	0.70	0.67	0.82	7427	961	4	0	2	0	0	logfile
✔	8E9X	27967	2024-12-28	2022-08-27	2.7	2.10	2.72	1.9	0.005	0.55	0.0	0.04	12.41	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.59	0.0	0.04	14.99	0.00	2.500	6.15	2.64	3.6	96.4	0.0	0.58	0.34	0.80	0.82	3.88	8380	1109	6	0	1	0	0	logfile
✔	8EA3	27971	2024-12-29	2022-08-27	3.7	3.91	3.69	3.8	0.013	1.65	12.0	0.09	18.84	0.02	1.162	11.38	0.29	2.4	97.4	0.2	-1.04	0.75	0.70	2.00	3.8	0.005	0.66	0.0	0.04	20.31	0.00	1.403	7.58	1.80	2.6	97.4	0.0	1.67	1.42	0.81	0.82	1.36	55955	5618	44	495	26	0	0	logfile
✔	8EA4	27972	2024-12-29	2022-08-27	3.0	4.51	3.88	3.9	0.013	1.63	12.0	0.08	18.84	0.02	1.131	13.81	0.21	2.3	97.7	0.0	-1.13	0.76	0.60	1.23	3.9	0.003	0.71	0.0	0.04	20.07	0.00	1.343	8.60	0.90	2.3	97.7	0.0	1.58	1.44	0.89	0.83	1.02	58049	5875	46	495	28	0	0	logfile
✔	8AVW	15685	2024-12-28	2022-08-27	3.62	4.19	3.72	4.1	0.008	1.38	0.0	0.08	18.22	0.01	2.602	1.79	3.45	4.7	95.1	0.2	-4.09	0.77	0.85	1.78	4.1	0.003	0.66	0.0	0.04	18.32	0.00	2.598	5.20	1.94	2.0	98.0	0.0	0.27	0.68	0.77	0.81	1.69	8992	1156	4	0	2	0	0	logfile
✔	8EA0	27970	2024-12-27	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	13.66	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.004	0.61	0.0	0.04	14.42	0.01	2.328	9.75	0.84	4.3	95.7	0.0	0.91	0.34	0.74	0.81	2.56	2286	285	2	0	2	0	0	logfile

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