Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E9W	27966	2024-12-28	2022-08-27	2.69	2.11	2.70	1.9	0.005	0.63	0.0	0.04	12.69	0.00	2.210	7.31	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.59	0.0	0.04	15.46	0.00	2.524	5.57	2.51	3.2	96.8	0.0	0.89	0.35	0.80	0.82	3.03	8529	1123	6	0	1	0	0	logfile
✔	8EA4	27972	2024-12-29	2022-08-27	3.0	4.51	3.88	3.9	0.013	1.63	12.0	0.08	18.84	0.02	1.131	13.81	0.21	2.3	97.7	0.0	-1.13	0.76	0.60	1.23	3.9	0.003	0.71	0.0	0.04	20.07	0.00	1.343	8.60	0.90	2.3	97.7	0.0	1.58	1.44	0.89	0.83	1.02	58049	5875	46	495	28	0	0	logfile
✔	8E9Z	27969	2024-12-28	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.37	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.004	0.57	0.0	0.04	15.78	0.00	1.841	7.99	1.61	3.0	97.0	0.0	0.33	0.29	0.79	0.80	2.90	8566	1129	6	0	2	0	0	logfile
✔	8AVB	15677	2024-12-31	2022-08-26	4.43	5.51	4.88	4.3	0.005	0.81	1.0	0.05	11.64	0.01	2.142	17.52	0.00	4.4	95.4	0.2	-0.47	0.81	0.63	—	4.2	0.003	0.67	0.0	0.05	12.56	0.01	2.338	20.46	0.00	6.2	93.7	0.1	-1.09	1.63	0.81	0.67	—	10591	1326	3	0	0	0	0	logfile
✔	8GPG	34192	2024-12-31	2022-08-26	4.1	4.40	4.13	4.3	0.005	0.76	0.0	0.05	16.31	0.00	2.130	13.46	0.00	6.5	93.5	0.0	-1.43	0.72	0.77	—	4.3	0.003	0.71	0.0	0.05	14.35	0.00	2.443	10.14	0.00	5.5	94.5	0.0	-1.35	0.40	0.72	0.78	—	15864	1920	21	0	48	0	0	logfile
✔	8GPN	34195	2024-12-31	2022-08-26	3.2	3.80	3.24	3.4	0.007	0.62	0.0	0.04	26.21	0.00	2.193	8.82	0.11	2.6	97.4	0.0	1.29	0.84	0.80	3.26	3.4	0.004	0.62	0.0	0.03	26.52	0.00	2.450	8.96	1.57	2.2	97.7	0.1	2.54	1.56	0.86	0.85	1.81	15047	1211	11	292	0	0	0	logfile
✔	8AVG	15682	2024-12-30	2022-08-26	4.01	3.61	3.84	3.5	0.003	0.70	0.0	0.05	15.12	0.00	2.189	13.04	0.07	9.3	90.5	0.2	-2.48	0.79	0.73	—	3.5	0.004	0.65	0.0	0.05	14.79	0.00	2.464	9.84	0.07	9.5	90.4	0.1	-2.21	0.35	0.79	0.73	—	13746	1732	4	0	2	0	0	logfile
✔	8AUR	15673	2024-12-27	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.005	0.66	0.0	0.04	16.05	0.00	2.611	8.30	2.54	8.4	91.5	0.1	-1.29	1.64	0.71	0.84	2.62	5409	699	3	0	0	0	0	logfile
✔	8GP5	34190	2024-12-27	2022-08-25	4.05	4.31	3.42	4.2	0.005	0.80	0.0	0.06	16.71	0.00	2.199	12.31	0.18	5.4	94.6	0.0	-1.09	0.61	0.79	—	4.2	0.004	0.72	0.0	0.05	13.91	0.00	2.375	10.83	0.00	6.1	93.9	0.0	-1.10	0.40	0.60	0.79	—	5470	646	11	0	26	0	0	logfile
✔	8GP3	34188	2024-12-29	2022-08-25	4.8	5.31	4.80	4.9	0.004	0.65	0.0	0.04	13.23	0.00	2.102	10.90	0.00	3.4	96.6	0.0	0.13	0.87	0.81	—	4.9	0.004	0.71	0.0	0.04	13.17	0.00	2.473	13.57	0.00	4.5	95.4	0.1	-0.31	1.03	0.87	0.82	—	11494	1522	8	0	0	0	0	logfile
✔	8GoF	34177	2024-12-27	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	13.26	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.004	0.59	0.0	0.04	14.40	0.00	2.630	6.75	1.14	2.0	98.0	0.0	1.63	1.48	0.42	0.81	2.78	3299	407	2	0	1	0	0	logfile
✔	8Go8	34173	2024-12-29	2022-08-24	3.41	3.65	3.44	3.6	0.004	0.61	0.0	0.04	12.95	0.00	2.253	5.19	0.00	2.7	97.3	0.0	1.03	0.74	0.81	2.28	3.6	0.003	0.56	0.0	0.04	14.89	0.00	2.594	6.08	0.98	3.5	96.5	0.0	1.00	0.60	0.76	0.84	2.29	11505	1520	8	0	0	0	0	logfile
✔	8GoE	34176	2024-12-27	2022-08-24	3.0	3.01	3.02	3.1	0.008	0.85	1.0	0.05	13.13	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.64	1.0	0.04	13.78	0.00	2.600	6.25	0.85	2.5	97.5	0.0	1.55	0.41	0.47	0.84	2.98	3323	407	2	0	1	0	0	logfile
✔	8ATV	15664	2024-12-29	2022-08-24	3.39	2.97	3.38	3.2	0.004	0.70	0.0	0.05	18.01	0.00	2.173	6.99	0.00	3.4	96.6	0.0	1.00	0.62	0.77	2.42	3.2	0.002	0.54	0.0	0.04	18.68	0.00	2.448	6.49	0.57	2.7	97.3	0.0	1.48	0.32	0.62	0.79	2.08	11161	1257	6	58	1	0	0	logfile
✔	8ATW	15665	2024-12-29	2022-08-24	3.62	3.49	3.71	3.7	0.005	0.74	0.0	0.05	18.13	0.00	2.199	8.51	0.00	2.8	97.2	0.0	1.06	0.72	0.79	1.90	3.6	0.006	0.67	0.0	0.04	19.77	0.00	1.506	9.33	2.89	3.9	96.1	0.0	0.46	0.39	0.72	0.81	2.00	11283	1258	6	61	1	0	0	logfile
✔	8Go9	34174	2024-12-30	2022-08-24	3.35	3.59	3.37	3.6	0.003	0.55	0.0	0.04	13.07	0.01	2.277	5.93	0.32	5.2	94.8	0.0	0.51	0.76	0.81	2.07	3.6	0.003	0.60	0.0	0.04	14.65	0.01	2.525	6.24	1.83	4.8	95.2	0.0	0.10	0.42	0.77	0.84	2.36	11662	1524	8	0	0	0	0	logfile
✔	8ATT	15662	2024-12-29	2022-08-24	3.44	3.38	3.45	3.5	0.005	0.81	0.0	0.07	17.71	0.00	2.127	10.09	0.18	2.4	97.6	0.0	0.87	0.70	0.72	1.72	3.5	0.005	0.65	0.0	0.04	19.35	0.00	2.473	10.09	3.40	4.2	95.8	0.0	0.81	0.39	0.72	0.77	1.38	11124	1246	6	56	1	0	0	logfile
✔	8E7M	27939	2024-12-28	2022-08-24	3.3	3.56	3.36	3.6	0.004	0.76	0.0	0.05	13.53	0.01	2.154	7.51	0.00	4.5	95.5	0.0	-1.04	0.68	0.78	2.45	3.6	0.004	0.65	0.0	0.04	15.04	0.00	2.553	4.61	1.34	3.0	97.0	0.0	1.26	0.43	0.67	0.82	1.87	8293	1030	7	0	11	0	0	logfile
✔	8GNK	34167	2024-12-27	2022-08-24	3.1	3.32	3.07	3.3	0.004	0.67	1.0	0.05	15.25	0.00	2.252	5.98	0.47	3.0	97.0	0.0	0.36	0.64	0.89	2.66	3.3	0.002	0.50	0.0	0.04	14.76	0.00	2.615	5.25	3.00	2.3	97.7	0.0	1.44	0.88	0.61	0.87	2.30	6164	751	4	0	12	6	0	logfile
✔	8E7D	26587	2024-12-27	2022-08-23	3.31	3.63	2.84	3.8	0.005	0.70	0.0	0.06	18.19	0.01	2.117	21.89	0.26	8.1	91.9	0.0	-4.77	0.53	0.80	3.16	3.9	0.007	0.89	0.0	0.05	17.21	0.00	2.514	17.20	2.60	9.5	90.5	0.0	-3.49	2.46	0.46	0.77	3.35	3525	450	5	0	0	0	0	logfile

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