Table showing results for December 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D7R	27231	2024-12-29	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	15.03	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	4.0	0.004	0.77	0.0	0.05	15.08	0.01	2.422	11.03	2.27	10.3	89.7	0.0	-1.96	0.86	0.64	0.65	1.45	9627	1167	12	0	16	0	0	logfile
✔	8D7H	27230	2024-12-30	2022-06-07	3.4	3.69	3.48	3.6	0.003	0.53	0.0	0.04	12.37	0.00	2.291	4.59	1.06	3.9	96.1	0.0	-1.37	0.68	0.76	1.60	3.6	0.003	0.69	0.0	0.05	13.84	0.00	2.362	4.14	2.34	6.1	93.9	0.0	0.06	0.61	0.72	0.84	1.92	12540	1526	22	0	32	0	0	logfile
✔	8D6A	27221	2024-12-28	2022-06-06	3.54	3.92	3.53	3.7	0.003	0.56	0.0	0.04	16.68	0.00	2.261	6.62	0.00	8.0	92.0	0.0	-3.01	0.75	0.72	0.93	3.7	0.004	0.73	0.0	0.05	14.28	0.00	2.251	8.15	2.18	9.1	90.9	0.0	-1.39	0.67	0.77	0.78	1.48	7912	963	9	0	15	0	0	logfile
✔	8A2Y	15108	2024-12-31	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.004	0.70	0.0	0.05	16.28	0.00	2.112	3.78	0.64	1.1	98.9	0.0	1.14	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	7Y13	33555	2024-12-27	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.62	0.0	0.04	15.59	0.01	2.624	7.35	0.86	6.5	93.5	0.0	2.74	0.29	0.55	0.80	2.59	2199	264	2	0	7	2	0	logfile
✔	8D65	27217	2024-12-30	2022-06-06	3.47	3.58	3.37	3.5	0.010	1.03	0.0	0.07	15.84	0.01	1.871	9.16	0.00	4.9	95.1	0.0	-3.22	0.69	0.83	3.43	3.6	0.003	0.53	0.0	0.05	15.10	0.00	2.566	2.62	1.31	3.2	96.8	0.0	0.46	0.48	0.72	0.86	3.31	12780	1535	10	0	5	0	0	logfile
✔	8A2S	15105	2024-12-31	2022-06-06	2.22	2.37	2.18	2.3	0.009	0.68	0.0	0.05	14.10	0.01	1.758	3.33	0.64	1.9	98.1	0.0	-1.13	0.71	0.87	6.45	2.3	0.006	0.72	0.0	0.05	16.82	0.00	1.854	4.19	1.29	1.6	98.4	0.0	1.24	1.05	0.73	0.89	5.97	15141	1835	15	0	15	591	0	logfile
✔	8D64	27216	2024-12-30	2022-06-06	3.14	3.25	3.11	3.2	0.007	0.81	0.0	0.06	13.69	0.01	2.275	7.13	0.00	6.6	93.4	0.0	-3.61	0.72	0.84	3.27	3.2	0.004	0.60	0.0	0.05	15.25	0.00	2.517	4.29	1.75	6.1	93.9	0.0	-0.31	1.18	0.73	0.86	3.21	12545	1540	10	0	0	0	0	logfile
✔	8D6W	27224	2024-12-26	2022-06-06	3.0	2.47	2.82	2.8	0.004	0.60	0.0	0.05	15.25	0.00	2.197	7.11	1.53	2.1	97.9	0.0	1.61	0.74	0.87	3.34	2.8	0.003	0.53	0.0	0.04	16.22	0.00	2.317	5.74	2.07	1.8	98.2	0.0	2.31	0.40	0.76	0.89	3.16	46380	6146	35	0	0	0	0	logfile
✔	7Y14	33556	2024-12-27	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.58	1.0	0.04	15.62	0.00	2.608	7.60	0.87	3.8	96.2	0.0	3.30	0.99	0.50	0.78	2.34	2145	265	2	0	4	0	0	logfile
✔	8A2T	15106	2024-12-31	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.006	0.72	0.0	0.05	16.47	0.00	1.845	3.41	1.35	1.3	98.7	0.0	1.27	0.82	0.74	0.90	5.47	15046	1830	15	0	10	556	0	logfile
✔	7Y15	33557	2024-12-28	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.004	0.61	0.0	0.04	16.37	0.00	2.415	7.33	2.36	3.1	96.9	0.0	1.37	0.22	0.66	0.85	3.48	8495	1109	6	0	3	0	0	logfile
✔	7Y0W	33552	2024-12-27	2022-06-06	3.42	3.69	3.35	3.6	0.006	0.95	0.0	0.06	14.24	0.01	2.295	4.22	0.18	6.9	93.1	0.0	-2.40	0.68	0.83	2.65	3.6	0.003	0.59	0.0	0.05	15.47	0.00	2.480	8.25	3.48	6.1	93.9	0.0	-1.54	0.40	0.67	0.84	2.57	5086	651	6	0	3	0	0	logfile
✔	8D66	27218	2024-12-30	2022-06-06	3.14	3.25	3.04	3.2	0.009	1.02	0.0	0.06	18.54	0.01	2.309	7.77	0.00	6.2	93.8	0.0	-1.63	0.69	0.83	3.44	3.2	0.002	0.54	0.0	0.05	15.59	0.00	2.556	5.94	2.62	4.5	95.5	0.0	0.18	0.37	0.65	0.82	3.29	12800	1540	10	0	5	0	0	logfile
✔	8D63	27215	2024-12-30	2022-06-06	3.14	3.26	3.09	3.2	0.009	0.99	0.0	0.06	16.37	0.01	2.290	9.81	0.36	5.0	94.7	0.3	-1.01	0.65	0.81	4.38	3.2	0.004	0.55	0.0	0.05	15.48	0.00	2.408	4.34	0.58	3.5	96.5	0.0	0.78	0.33	0.66	0.84	3.96	12785	1535	10	0	5	0	0	logfile
✔	7Y12	33554	2024-12-28	2022-06-06	3.1	2.87	3.11	3.0	0.003	0.58	1.0	0.04	15.81	0.00	2.086	9.89	0.22	3.4	96.6	0.0	0.86	0.62	0.78	2.84	3.0	0.003	0.55	1.0	0.04	16.52	0.00	2.537	7.33	2.70	3.1	96.9	0.0	0.92	0.31	0.61	0.78	2.68	8501	1110	7	0	3	0	0	logfile
✔	8A2Z	15109	2024-12-31	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.62	0.0	0.04	15.75	0.00	2.189	3.65	0.90	1.7	98.3	0.0	1.70	1.46	0.74	0.89	5.84	15060	1830	15	0	10	570	0	logfile
✔	8A2U	15107	2024-12-31	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.62	0.0	0.04	16.46	0.00	2.097	3.34	0.45	1.0	99.0	0.0	1.54	1.07	0.73	0.88	5.76	15022	1830	15	0	15	512	0	logfile
✔	8D67	27219	2024-12-30	2022-06-06	3.3	3.45	2.92	3.5	0.009	0.97	0.0	0.07	13.90	0.01	2.261	6.52	0.36	7.5	92.5	0.0	-1.52	0.68	0.82	3.08	3.5	0.003	0.54	0.0	0.05	15.40	0.00	2.564	3.68	1.75	5.8	94.2	0.0	-0.24	1.16	0.69	0.84	2.77	12570	1540	10	0	0	0	0	logfile
✔	8D6V	27223	2024-12-26	2022-06-06	3.2	3.13	3.13	3.2	0.003	0.57	0.0	0.04	13.29	0.00	2.204	5.05	0.00	1.7	98.3	0.0	2.14	0.79	0.86	3.28	3.2	0.002	0.57	1.0	0.04	14.82	0.00	2.458	4.78	1.23	1.5	98.5	0.0	2.38	0.33	0.79	0.87	2.85	46380	6146	35	0	0	0	0	logfile

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