2022

• Rico Mayro TP, Bacellar C, Pang W, Bernando C, Gomez LF, Jones CF, Ferguson KR, Kwok J, Anielski D, Belkacem A, Boll R, Bozek J, Carron S, Chen G, Delmas T, Englert L, Epp S, Erk B, Foucar L, Hartmann R, Hexemer A, Huth M, Leone SR, Ma JH, Marchesini S, Neumark DM, Poon BK, Prell J, Rolles D, Rudek B, Rudenko A, Seifrid M, Swiggers M, Ullrich J, Weise F, Zwart P, Bostedt C, Gessner O, and Vilesov AF: Sizes of pure and doped helium droplets from single shot x-ray imaging. J. Chem. Phys. 2022, 156, 041102 [PMID: 35105059] [PBCID: ]
• Hancock M, Peulen TO, Webb B, Poon B, Fraser JS, Adams P, Sali A: Integration of software tools for integrative modeling of biomolecular systems. J. Struct. Biol. 2022, 214:107841 [PMID: 35149213] [PMCID: ]
• Wittwer F, Sauter NK, Mendez D, Poon BK, Brewster AS, Holton JM, Wall ME, Hart WE, Bard DJ, Blaschke J: Accelerating x-ray tracing for exascale systems using kokkos. CUG 2022 Proceedings 2022

• Liebschner D, Afonine PV, Moriarty NW, Poon BK, Chen VB, Adams PD: CERES: a cryo-EM re-refinement system for continuous improvement of deposited models. Acta Cryst. 2021, D77:48-61. [PMID: 33404525] [PMCID: PMC7787109]
• Brewster AS, Liebschner D, Poon BK, Sauter NK, Adams PD: The challenges of scientific sofware sustainability. ASCR Workshop on the Science of Scientific-Software Development and Use 2021

• Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD: Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Cryst. 2019, 75:861-877 [PMID: 31588918] [PMCID: PMC6778852 ]
• Kim DN, Moriarty NW, Kirmizialtin S, Afonine PV, Poon B, Sobolev OV, Adams PD, Sanbonmatsu K: Cryo_fit: Democratization of flexible fitting for cryo-EM. J Struct Biol. 2019, 208:1-6 [PMID: 31279069] [PMCID: ]
• Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY: Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Cryst. 2019, D75:451-454. [PMID: 30988261] [PMCID: PMC6465986]

• Pande K, Donatelli JJ, Malmerberg E, Foucar L, Poon BK, Sutter M, Botha S, Basu S, Bruce Doak R, Dörner K, Epp SW, Englert L, Fromme R, Hartmann E, Hartmann R, Hauser G, Hattne J, Hosseinizadeh A, Kassemeyer S, Lomb L, Montero SFC, Menzel A, Rolles D, Rudenko A, Seiber MM, Sierra RG, Schwander P, Ourmazd A, Fromme P, Sauter NK, Bogan M, Bozek J, Bostedt C, Schlichtng I, Kerfeld CA, Zwart PH: Free-electron laser data for multiple-particle fluctuation scattering analysis. Scientific Data 2018, 5: 180201. [PMID: 30277481] [PMCID: PMC6167951]
• Afonine PV, Klaholz BP, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD, Urzhumtsev A: New tools for the analysis and validation of cryo-EM maps and atomic models. Acta Cryst. 2018, D74:814-840. [PMID: 30198894] [PMCID: PMC6130467]
• Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD: Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. 2018, D74:531-544. [PMID: 29872004] [PMCID: PMC6096492]
• Moriarty NW, Liebschner D, Klei HE, Echols N, Afonine PV, Headd J, Poon BK, Adams PD: Interactive Comparison and Remediation of Collections of Macromolecular Structures. Protein Sci. 2018, 27:182-194 [PMID: 28901593] [PMCID: PMC5734393]

• Liebschner D, Afonine PV, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD: Polder maps: improving OMIT maps by excluding bulk solvent. Acta Cryst. 2017, D73:148-157 [PMID: 28177311] [PMCID: PMC5297918]

• Gomez LF, Ferguson KR, Cryan JP, Bacellar C, Tanyag RM, Jones C, Schorb S, Anielski D, Belkacem A, Bernando C, Boll R, Bozek J, Carron S, Chen G, Delmas T, Englert L, Epp SW, Erk B, Foucar L, Hartmann R, Hexemer A, Huth M, Kwok J, Leone SR, Ma JH, Maia FR, Malmerberg E, Marchesini S, Neumark DM, Poon B, Prell J, Rolles D, Rudek B, Rudenko A, Seifrid M, Siefermann KR, Sturm FP, Swiggers M, Ullrich J, Weise F, Zwart P, Bostedt C, Gessner O, Vilesov AF. Shapes and vorticities of superfluid helium nanodroplets. Science. 2014, 345(6199):906-909. [PMID: 25146284]

• Liu H, Poon BK, Saldin DK, Spence JC, Zwart PH. Three-dimensional single-particle imaging using angular correlations from X-ray laser data. Acta Crystallogr A. 2013,69(4):365-373. [PMID: 23778093]

• Liu H, Poon BK, Janssen AJ, Zwart PH. Computation of fluctuation scattering profiles via three-dimensional Zernike polynomials. Acta Crystallogr A. 2012,68(5):561-567. [PMID: 22893239]
• Chen G, Modestino MA, Poon BK, Schirotzek A, Marchesini S, Segalman RA, Hexemer A, Zwart PH. Structure determination of Pt-coated Au dumbbells via fluctuation X-ray scattering. J Synchrotron Radiat. 2012,19(5):695-700. [PMID: 22898947]

• Sauter NK, Poon BK. Autoindexing with outlier rejection and identification of superimposed lattices. J Appl Crystallogr. 2010,43(3):611-616. [PMID: 20502598] [PMCID: PMC2875182]
• Poon BK, Grosse-Kunstleve RW, Zwart PH, Sauter NK. Detection and correction of underassigned rotational symmetry prior to structure deposition. Acta Crystallogr D. 2010,66(5):503-513. [PMID: 20445225] [PMCID: PMC2865365]

• Ni F, Poon BK, Wang Q, Ma J. Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit. Acta Crystallogr D. 2009,65(7):633-643. [PMID: 19564683] [PMCID: PMC2703569]
• Chen X, Lu M, Poon BK, Wang Q, Ma J. Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement. Acta Crystallogr D. 2009,65(4):339-347. [PMID: 19307715] [PMCID: PMC2659883]

• Chen X, Poon BK, Dousis A, Wang Q, Ma J. Normal-mode refinement of anisotropic thermal parameters for potassium channel KcsA at 3.2 A crystallographic resolution. Structure. 2007,15(8):955-962. [PMID: 17698000] [PMCID: PMC3136661]
• Poon BK, Chen X, Lu M, Vyas NK, Quiocho FA, Wang Q, Ma J. Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution. Proc Natl Acad Sci. 2007,104(19):7869-7874. [PMID: 17470791] [PMCID: PMC1876539]

• Lu M, Poon B, Ma J. A New Method for Coarse-Grained Elastic Normal-Mode Analysis. J Chem Theory Comput. 2006,2(3):464-471. [PMID: 21760758] [PMCID: PMC3133770]