2010
- Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung L-W, Kapral GJ, Gross-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH:
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Acta Cryst. 2010, D66:213-221.
- Afonine PV, Grosse-Kunstleve RW, Chen VB, Headd JJ, Moriarty NW, Richardson JS, Richardson DC, Urzhumtsev A, Zwart PH, Adams PD:
phenix.model_vs_data: a high-level tool for the calculation of crystallographic model and data statistics.
J. Appl. Cryst. 2010, 43.
- Chen VB, Arendall III WB, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC:
MolProbity: all-atom structure validation for macromolecular crystallography.
Acta Cryst. 2010, D66:12-21.
2009
- Headd JJ, Immormino RM, Keedy DA, Emsley P, Richardson DC, Richardson JS:
Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place.
Journal of Structural and Functional Genomics 2009, 10(1):83-93.
- Keedy DA, Williams CJ, Headd JJ, Arendall III WB, Chen VB, Kapral GJ, Gillespie RA, Block JN, Zemla A, Richardson DC, Richardson JS:
The other 90% of the protein: Assessment beyond the CAs for CASP8 template-based and high-accuracy models.
Proteins: Structure, Function, and Bioinformatics 2009, 77(S9):29-49.
2008
- Richardson JS, Schneider B, Murray LW, Kapral GJ, Immormino RM, Headd JJ, Richardson DC, Ham D, Hershkovits E, Williams LD, Keating KS, Pyle AM, Micallef D, Westbrook J, Berman H:
RNA backbone: Consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution).
RNA 2008, 14:465-481.
2007
2004
- Gao Q, Hua J, Kimura R, Headd JJ, Fu XY, Chin YE:
Identification of the linker-SH2 domain of STAT as the origin of the SH2 domain using two-dimensional structural alignment.
Mol. Cell Proteomics 2004, 3(7): 704-714.
