phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/3jaj_3037/04_2022/3jaj_3037.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/3jaj_3037/04_2022/3jaj_3037.map refinement.macro_cycles=10 scattering_table=electron resolution=3.75 write_initial_geo_file=False >& 3jaj.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/3jaj_3037/04_2022/3jaj_3037.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/3jaj_3037/04_2022/3jaj_3037.map 3.75
Refinement ran but no refined model file.