phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5a7u_3079/11_2022/5a7u_3079.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5a7u_3079/11_2022/5a7u_3079.map refinement.macro_cycles=10 scattering_table=electron resolution=4.8 write_initial_geo_file=False >& 5a7u.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5a7u_3079/11_2022/5a7u_3079.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5a7u_3079/11_2022/5a7u_3079.map 4.8
Refinement ran but no refined model file.