phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5g5l_3439/05_2023/5g5l_3439_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5g5l_3439/05_2023/5g5l_3439.map refinement.macro_cycles=10 scattering_table=electron resolution=4.8 write_initial_geo_file=False >& 5g5l.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5g5l_3439/05_2023/5g5l_3439.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5g5l_3439/05_2023/5g5l_3439.map 4.8
Refinement ran but no refined model file.