Starting phenix.real_space_refine on Wed Mar 20 18:56:13 2024 by dcliebschner =============================================================================== Processing files: ------------------------------------------------------------------------------- Found model, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5gjr_9512/03_2024/5gjr_9512_updated.pdb Found real_map, /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5gjr_9512/03_2024/5gjr_9512.map Processing PHIL parameters: ------------------------------------------------------------------------------- Adding command-line PHIL: ------------------------- refinement.macro_cycles=10 scattering_table=electron resolution=3.5 write_initial_geo_file=False Final processed PHIL parameters: ------------------------------------------------------------------------------- data_manager { real_map_files = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5gjr_9512/03_2024/5gjr_9512.map" default_real_map = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5gjr_9512/03_2024/5gjr_9512.map" model { file = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5gjr_9512/03_2024/5gjr_9512_updated.pdb" } default_model = "/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5gjr_9512/03_2024/5gjr_9512_updated.pdb" } resolution = 3.5 write_initial_geo_file = False refinement { macro_cycles = 10 } qi { qm_restraints { package { program = *test } } } Starting job =============================================================================== ------------------------------------------------------------------------------- Citation: ********* Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. (2018) Real-space refinement in PHENIX for cryo-EM and crystallography. Acta Cryst. D74:531-544. Validating inputs Origin is already at (0, 0, 0), no shifts will be applied ------------------------------------------------------------------------------- Processing inputs ***************** Set random seed Set to: 0 Set model cs if undefined Decide on map wrapping Map wrapping is set to: False Normalize map: mean=0, sd=1 Input map: mean= -0.000 sd= 0.007 Set stop_for_unknowns flag Set to: True Assert model is a single copy model Assert all atoms have isotropic ADPs Construct map_model_manager Extract box with map and model Check model and map are aligned Set scattering table Set to: electron Number of scattering types: 5 Type Number sf(0) Gaussians P 24 5.49 5 S 646 5.16 5 C 90160 2.51 5 N 24862 2.21 5 O 27061 1.98 5 sf(0) = scattering factor at diffraction angle 0. Process input model Symmetric amino acids flipped Residue "I GLU 182": "OE1" <-> "OE2" Residue "I GLU 196": "OE1" <-> "OE2" Residue "I GLU 304": "OE1" <-> "OE2" Residue "I ARG 307": "NH1" <-> "NH2" Residue "I GLU 335": "OE1" <-> "OE2" Residue "I GLU 352": "OE1" <-> "OE2" Residue "H GLU 107": "OE1" <-> "OE2" Residue "H ARG 297": "NH1" <-> "NH2" Residue "H ARG 336": "NH1" <-> "NH2" Residue "H GLU 342": "OE1" <-> "OE2" Residue "H TYR 420": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L GLU 134": "OE1" <-> "OE2" Residue "L TYR 173": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "L GLU 217": "OE1" <-> "OE2" Residue "L GLU 234": "OE1" <-> "OE2" Residue "L GLU 245": "OE1" <-> "OE2" Residue "L ARG 251": "NH1" <-> "NH2" Residue "L ARG 255": "NH1" <-> "NH2" Residue "L GLU 349": "OE1" <-> "OE2" Residue "M GLU 95": "OE1" <-> "OE2" Residue "M GLU 176": "OE1" <-> "OE2" Residue "M ARG 238": "NH1" <-> "NH2" Residue "M ARG 269": "NH1" <-> "NH2" Residue "M ARG 334": "NH1" <-> "NH2" Residue "M ARG 364": "NH1" <-> "NH2" Residue "M GLU 414": "OE1" <-> "OE2" Residue "J GLU 61": "OE1" <-> "OE2" Residue "J GLU 218": "OE1" <-> "OE2" Residue "J GLU 250": "OE1" <-> "OE2" Residue "J GLU 275": "OE1" <-> "OE2" Residue "J GLU 284": "OE1" <-> "OE2" Residue "J ARG 372": "NH1" <-> "NH2" Residue "J GLU 373": "OE1" <-> "OE2" Residue "K TYR 41": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "K GLU 146": "OE1" <-> "OE2" Residue "K GLU 189": "OE1" <-> "OE2" Residue "K ARG 287": "NH1" <-> "NH2" Residue "K GLU 291": "OE1" <-> "OE2" Residue "K GLU 332": "OE1" <-> "OE2" Residue "K GLU 381": "OE1" <-> "OE2" Residue "N GLU 120": "OE1" <-> "OE2" Residue "O GLU 294": "OE1" <-> "OE2" Residue "O GLU 364": "OE1" <-> "OE2" Residue "O GLU 368": "OE1" <-> "OE2" Residue "P PHE 185": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "Q GLU 108": "OE1" <-> "OE2" Residue "Q GLU 221": "OE1" <-> "OE2" Residue "Q GLU 222": "OE1" <-> "OE2" Residue "Q GLU 332": "OE1" <-> "OE2" Residue "Q GLU 402": "OE1" <-> "OE2" Residue "R ARG 237": "NH1" <-> "NH2" Residue "R GLU 238": "OE1" <-> "OE2" Residue "R ARG 300": "NH1" <-> "NH2" Residue "U ARG 34": "NH1" <-> "NH2" Residue "U GLU 166": "OE1" <-> "OE2" Residue "U GLU 173": "OE1" <-> "OE2" Residue "V GLU 236": "OE1" <-> "OE2" Residue "B GLU 216": "OE1" <-> "OE2" Residue "B GLU 232": "OE1" <-> "OE2" Residue "C GLU 2": "OE1" <-> "OE2" Residue "C GLU 48": "OE1" <-> "OE2" Residue "C GLU 65": "OE1" <-> "OE2" Residue "C GLU 119": "OE1" <-> "OE2" Residue "C PHE 146": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 155": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C PHE 198": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "C GLU 204": "OE1" <-> "OE2" Residue "D GLU 70": "OE1" <-> "OE2" Residue "D GLU 89": "OE1" <-> "OE2" Residue "D GLU 103": "OE1" <-> "OE2" Residue "D GLU 232": "OE1" <-> "OE2" Residue "D GLU 241": "OE1" <-> "OE2" Residue "E GLU 173": "OE1" <-> "OE2" Residue "E GLU 238": "OE1" <-> "OE2" Residue "F GLU 25": "OE1" <-> "OE2" Residue "F GLU 29": "OE1" <-> "OE2" Residue "F GLU 51": "OE1" <-> "OE2" Residue "F GLU 105": "OE1" <-> "OE2" Residue "F GLU 207": "OE1" <-> "OE2" Residue "F GLU 232": "OE1" <-> "OE2" Residue "F GLU 235": "OE1" <-> "OE2" Residue "F GLU 236": "OE1" <-> "OE2" Residue "G TYR 137": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G PHE 154": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "G GLU 197": "OE1" <-> "OE2" Residue "G GLU 202": "OE1" <-> "OE2" Residue "G ARG 239": "NH1" <-> "NH2" Residue "X GLU 31": "OE1" <-> "OE2" Residue "X PHE 102": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "X GLU 183": "OE1" <-> "OE2" Residue "X GLU 234": "OE1" <-> "OE2" Residue "X TYR 238": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "a ARG 45": "NH1" <-> "NH2" Residue "a GLU 145": "OE1" <-> "OE2" Residue "a GLU 150": "OE1" <-> "OE2" Residue "a GLU 151": "OE1" <-> "OE2" Residue "a GLU 185": "OE1" <-> "OE2" Residue "b GLU 22": "OE1" <-> "OE2" Residue "b GLU 139": "OE1" <-> "OE2" Residue "b GLU 150": "OE1" <-> "OE2" Residue "b GLU 220": "OE1" <-> "OE2" Residue "c TYR 74": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "c PHE 120": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "d GLU 49": "OE1" <-> "OE2" Residue "e PHE 54": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "e GLU 148": "OE1" <-> "OE2" Residue "e ASP 190": "OD1" <-> "OD2" Residue "e GLU 197": "OE1" <-> "OE2" Residue "f GLU 18": "OE1" <-> "OE2" Residue "f GLU 31": "OE1" <-> "OE2" Residue "f GLU 116": "OE1" <-> "OE2" Residue "g GLU 155": "OE1" <-> "OE2" Residue "g GLU 194": "OE1" <-> "OE2" Residue "h GLU 216": "OE1" <-> "OE2" Residue "h GLU 232": "OE1" <-> "OE2" Residue "i GLU 2": "OE1" <-> "OE2" Residue "i GLU 48": "OE1" <-> "OE2" Residue "i GLU 65": "OE1" <-> "OE2" Residue "i GLU 119": "OE1" <-> "OE2" Residue "i PHE 146": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "i PHE 155": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "i PHE 172": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "i GLU 182": "OE1" <-> "OE2" Residue "i GLU 204": "OE1" <-> "OE2" Residue "j GLU 70": "OE1" <-> "OE2" Residue "j GLU 89": "OE1" <-> "OE2" Residue "j GLU 103": "OE1" <-> "OE2" Residue "j GLU 232": "OE1" <-> "OE2" Residue "j GLU 241": "OE1" <-> "OE2" Residue "k GLU 173": "OE1" <-> "OE2" Residue "l ARG 20": "NH1" <-> "NH2" Residue "l GLU 25": "OE1" <-> "OE2" Residue "l GLU 29": "OE1" <-> "OE2" Residue "l GLU 51": "OE1" <-> "OE2" Residue "l GLU 232": "OE1" <-> "OE2" Residue "l GLU 235": "OE1" <-> "OE2" Residue "l GLU 236": "OE1" <-> "OE2" Residue "m TYR 137": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "m PHE 154": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "m GLU 197": "OE1" <-> "OE2" Residue "m GLU 202": "OE1" <-> "OE2" Residue "n GLU 31": "OE1" <-> "OE2" Residue "n PHE 102": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "n GLU 183": "OE1" <-> "OE2" Residue "n GLU 234": "OE1" <-> "OE2" Residue "n TYR 238": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "o PHE 8": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "o GLU 145": "OE1" <-> "OE2" Residue "o GLU 150": "OE1" <-> "OE2" Residue "o GLU 151": "OE1" <-> "OE2" Residue "o GLU 185": "OE1" <-> "OE2" Residue "p GLU 22": "OE1" <-> "OE2" Residue "p GLU 139": "OE1" <-> "OE2" Residue "p GLU 150": "OE1" <-> "OE2" Residue "p GLU 220": "OE1" <-> "OE2" Residue "q TYR 74": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "q PHE 120": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "r GLU 49": "OE1" <-> "OE2" Residue "s ARG 73": "NH1" <-> "NH2" Residue "s GLU 148": "OE1" <-> "OE2" Residue "s ASP 190": "OD1" <-> "OD2" Residue "s GLU 197": "OE1" <-> "OE2" Residue "t GLU 18": "OE1" <-> "OE2" Residue "t GLU 31": "OE1" <-> "OE2" Residue "t GLU 116": "OE1" <-> "OE2" Residue "u GLU 155": "OE1" <-> "OE2" Residue "u GLU 194": "OE1" <-> "OE2" Residue "v GLU 107": "OE1" <-> "OE2" Residue "v ARG 297": "NH1" <-> "NH2" Residue "v ARG 336": "NH1" <-> "NH2" Residue "v GLU 342": "OE1" <-> "OE2" Residue "v TYR 420": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "w GLU 182": "OE1" <-> "OE2" Residue "w GLU 196": "OE1" <-> "OE2" Residue "w GLU 304": "OE1" <-> "OE2" Residue "w ARG 307": "NH1" <-> "NH2" Residue "w GLU 335": "OE1" <-> "OE2" Residue "w GLU 352": "OE1" <-> "OE2" Residue "x GLU 61": "OE1" <-> "OE2" Residue "x GLU 218": "OE1" <-> "OE2" Residue "x GLU 250": "OE1" <-> "OE2" Residue "x GLU 275": "OE1" <-> "OE2" Residue "x GLU 284": "OE1" <-> "OE2" Residue "x ARG 372": "NH1" <-> "NH2" Residue "x GLU 373": "OE1" <-> "OE2" Residue "y TYR 41": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "y GLU 146": "OE1" <-> "OE2" Residue "y GLU 189": "OE1" <-> "OE2" Residue "y ARG 287": "NH1" <-> "NH2" Residue "y GLU 291": "OE1" <-> "OE2" Residue "y GLU 332": "OE1" <-> "OE2" Residue "y GLU 381": "OE1" <-> "OE2" Residue "z GLU 134": "OE1" <-> "OE2" Residue "z TYR 173": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "z GLU 217": "OE1" <-> "OE2" Residue "z GLU 234": "OE1" <-> "OE2" Residue "z GLU 245": "OE1" <-> "OE2" Residue "z ARG 251": "NH1" <-> "NH2" Residue "z ARG 255": "NH1" <-> "NH2" Residue "z GLU 349": "OE1" <-> "OE2" Residue "0 GLU 95": "OE1" <-> "OE2" Residue "0 GLU 176": "OE1" <-> "OE2" Residue "0 ARG 238": "NH1" <-> "NH2" Residue "0 ARG 269": "NH1" <-> "NH2" Residue "0 ARG 334": "NH1" <-> "NH2" Residue "0 ARG 364": "NH1" <-> "NH2" Residue "0 GLU 414": "OE1" <-> "OE2" Residue "1 GLU 120": "OE1" <-> "OE2" Residue "2 GLU 294": "OE1" <-> "OE2" Residue "2 GLU 364": "OE1" <-> "OE2" Residue "2 GLU 368": "OE1" <-> "OE2" Residue "3 PHE 185": "CD1" <-> "CD2" "CE1" <-> "CE2" Residue "4 GLU 108": "OE1" <-> "OE2" Residue "4 GLU 221": "OE1" <-> "OE2" Residue "4 GLU 222": "OE1" <-> "OE2" Residue "4 GLU 332": "OE1" <-> "OE2" Residue "4 GLU 402": "OE1" <-> "OE2" Residue "5 ARG 237": "NH1" <-> "NH2" Residue "5 GLU 238": "OE1" <-> "OE2" Residue "5 ARG 300": "NH1" <-> "NH2" Residue "8 ARG 34": "NH1" <-> "NH2" Residue "8 GLU 166": "OE1" <-> "OE2" Residue "8 GLU 173": "OE1" <-> "OE2" Residue "9 GLU 236": "OE1" <-> "OE2" Time to flip residues: 0.29s Monomer Library directory: "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/chem_data/mon_lib" Total number of atoms: 142753 Number of models: 1 Model: "" Number of chains: 76 Chain: "I" Number of atoms: 2720 Number of conformers: 1 Conformer: "" Number of residues, atoms: 359, 2720 Classifications: {'peptide': 359} Incomplete info: {'truncation_to_alanine': 26} Link IDs: {'PCIS': 1, 'PTRANS': 15, 'TRANS': 342} Chain breaks: 1 Unresolved non-hydrogen bonds: 113 Unresolved non-hydrogen angles: 142 Unresolved non-hydrogen dihedrals: 91 Unresolved non-hydrogen chiralities: 6 Planarities with less than four sites: {'GLN:plan1': 3, 'TYR:plan': 1, 'ASN:plan1': 1, 'ASP:plan': 1, 'PHE:plan': 1, 'GLU:plan': 8, 'ARG:plan': 3} Unresolved non-hydrogen planarities: 80 Chain: "H" Number of atoms: 2893 Number of conformers: 1 Conformer: "" Number of residues, atoms: 380, 2893 Classifications: {'peptide': 380} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PTRANS': 21, 'TRANS': 358} Chain breaks: 1 Unresolved non-hydrogen bonds: 92 Unresolved non-hydrogen angles: 117 Unresolved non-hydrogen dihedrals: 67 Unresolved non-hydrogen chiralities: 13 Planarities with less than four sites: {'GLN:plan1': 3, 'GLU:plan': 3, 'ASN:plan1': 1, 'ARG:plan': 1, 'ASP:plan': 4} Unresolved non-hydrogen planarities: 42 Chain: "L" Number of atoms: 2860 Number of conformers: 1 Conformer: "" Number of residues, atoms: 375, 2860 Classifications: {'peptide': 375} Incomplete info: {'truncation_to_alanine': 31} Link IDs: {'PCIS': 1, 'PTRANS': 17, 'TRANS': 356} Unresolved non-hydrogen bonds: 121 Unresolved non-hydrogen angles: 149 Unresolved non-hydrogen dihedrals: 98 Unresolved non-hydrogen chiralities: 9 Planarities with less than four sites: {'GLN:plan1': 2, 'HIS:plan': 1, 'TYR:plan': 1, 'ASN:plan1': 1, 'ASP:plan': 2, 'GLU:plan': 7, 'ARG:plan': 2} Unresolved non-hydrogen planarities: 67 Chain: "M" Number of atoms: 2858 Number of conformers: 1 Conformer: "" Number of residues, atoms: 376, 2858 Classifications: {'peptide': 376} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PCIS': 1, 'PTRANS': 16, 'TRANS': 358} Chain breaks: 1 Unresolved non-hydrogen bonds: 93 Unresolved non-hydrogen angles: 115 Unresolved non-hydrogen dihedrals: 73 Unresolved non-hydrogen chiralities: 11 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 3, 'HIS:plan': 1, 'ARG:plan': 3, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 42 Chain: "J" Number of atoms: 2820 Number of conformers: 1 Conformer: "" Number of residues, atoms: 358, 2820 Classifications: {'peptide': 358} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PCIS': 1, 'PTRANS': 15, 'TRANS': 341} Chain breaks: 1 Unresolved non-hydrogen bonds: 17 Unresolved non-hydrogen angles: 22 Unresolved non-hydrogen dihedrals: 12 Unresolved non-hydrogen chiralities: 2 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 10 Chain: "K" Number of atoms: 3039 Number of conformers: 1 Conformer: "" Number of residues, atoms: 380, 3039 Classifications: {'peptide': 380} Link IDs: {'PTRANS': 17, 'TRANS': 362} Chain: "N" Number of atoms: 5449 Number of conformers: 1 Conformer: "" Number of residues, atoms: 821, 5449 Classifications: {'peptide': 821} Incomplete info: {'truncation_to_alanine': 43} Link IDs: {'PTRANS': 29, 'TRANS': 791} Chain breaks: 4 Unresolved chain link angles: 17 Unresolved non-hydrogen bonds: 989 Unresolved non-hydrogen angles: 1346 Unresolved non-hydrogen dihedrals: 749 Unresolved non-hydrogen chiralities: 125 Planarities with less than four sites: {'GLN:plan1': 25, 'ARG:plan': 15, 'TYR:plan': 12, 'ASN:plan1': 28, 'HIS:plan': 12, 'PHE:plan': 14, 'GLU:plan': 33, 'ASP:plan': 26} Unresolved non-hydrogen planarities: 557 Chain: "O" Number of atoms: 2369 Number of conformers: 1 Conformer: "" Number of residues, atoms: 372, 2369 Classifications: {'peptide': 372} Incomplete info: {'truncation_to_alanine': 55} Link IDs: {'PTRANS': 12, 'TRANS': 359} Chain breaks: 1 Unresolved chain link angles: 10 Unresolved non-hydrogen bonds: 664 Unresolved non-hydrogen angles: 909 Unresolved non-hydrogen dihedrals: 520 Unresolved non-hydrogen chiralities: 81 Planarities with less than four sites: {'GLN:plan1': 18, 'ARG:plan': 11, 'TYR:plan': 6, 'ASN:plan1': 14, 'TRP:plan': 3, 'HIS:plan': 10, 'PHE:plan': 11, 'GLU:plan': 20, 'ASP:plan': 16} Unresolved non-hydrogen planarities: 411 Chain: "P" Number of atoms: 2832 Number of conformers: 1 Conformer: "" Number of residues, atoms: 413, 2832 Classifications: {'peptide': 413} Incomplete info: {'truncation_to_alanine': 60} Link IDs: {'CIS': 1, 'PTRANS': 6, 'TRANS': 405} Chain breaks: 5 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 550 Unresolved non-hydrogen angles: 714 Unresolved non-hydrogen dihedrals: 416 Unresolved non-hydrogen chiralities: 61 Planarities with less than four sites: {'GLN:plan1': 17, 'TYR:plan': 4, 'ASN:plan1': 8, 'TRP:plan': 1, 'ASP:plan': 13, 'PHE:plan': 2, 'GLU:plan': 28, 'ARG:plan': 13} Unresolved non-hydrogen planarities: 310 Chain: "Q" Number of atoms: 2956 Number of conformers: 1 Conformer: "" Number of residues, atoms: 421, 2956 Classifications: {'peptide': 421} Incomplete info: {'truncation_to_alanine': 85} Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 410} Unresolved chain link angles: 5 Unresolved non-hydrogen bonds: 383 Unresolved non-hydrogen angles: 489 Unresolved non-hydrogen dihedrals: 302 Unresolved non-hydrogen chiralities: 42 Planarities with less than four sites: {'GLN:plan1': 8, 'ASP:plan': 9, 'TYR:plan': 2, 'ASN:plan1': 2, 'HIS:plan': 2, 'PHE:plan': 4, 'GLU:plan': 13, 'ARG:plan': 9} Unresolved non-hydrogen planarities: 199 Chain: "R" Number of atoms: 2767 Number of conformers: 1 Conformer: "" Number of residues, atoms: 376, 2767 Classifications: {'peptide': 376} Incomplete info: {'truncation_to_alanine': 28} Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 368} Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 338 Unresolved non-hydrogen angles: 438 Unresolved non-hydrogen dihedrals: 257 Unresolved non-hydrogen chiralities: 31 Planarities with less than four sites: {'GLN:plan1': 3, 'ASP:plan': 12, 'TYR:plan': 3, 'ASN:plan1': 6, 'TRP:plan': 1, 'HIS:plan': 1, 'GLU:plan': 16, 'ARG:plan': 15} Unresolved non-hydrogen planarities: 207 Chain: "S" Number of atoms: 2723 Number of conformers: 1 Conformer: "" Number of residues, atoms: 421, 2723 Classifications: {'peptide': 421} Incomplete info: {'truncation_to_alanine': 94} Link IDs: {'PTRANS': 9, 'TRANS': 411} Chain breaks: 3 Unresolved chain link angles: 4 Unresolved non-hydrogen bonds: 768 Unresolved non-hydrogen angles: 1005 Unresolved non-hydrogen dihedrals: 613 Unresolved non-hydrogen chiralities: 67 Planarities with less than four sites: {'GLN:plan1': 20, 'HIS:plan': 9, 'TYR:plan': 12, 'ASN:plan1': 11, 'ASP:plan': 13, 'PHE:plan': 10, 'GLU:plan': 25, 'ARG:plan': 23} Unresolved non-hydrogen planarities: 495 Chain: "T" Number of atoms: 1699 Number of conformers: 1 Conformer: "" Number of residues, atoms: 258, 1699 Classifications: {'peptide': 258} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PTRANS': 11, 'TRANS': 246} Chain breaks: 1 Unresolved chain link angles: 9 Unresolved non-hydrogen bonds: 452 Unresolved non-hydrogen angles: 607 Unresolved non-hydrogen dihedrals: 365 Unresolved non-hydrogen chiralities: 42 Planarities with less than four sites: {'GLN:plan1': 12, 'HIS:plan': 2, 'TYR:plan': 9, 'ASN:plan1': 9, 'TRP:plan': 2, 'ASP:plan': 7, 'PHE:plan': 7, 'GLU:plan': 13, 'ARG:plan': 8} Unresolved non-hydrogen planarities: 271 Chain: "U" Number of atoms: 2131 Number of conformers: 1 Conformer: "" Number of residues, atoms: 283, 2131 Classifications: {'peptide': 283} Incomplete info: {'truncation_to_alanine': 18} Link IDs: {'PTRANS': 8, 'TRANS': 274} Chain breaks: 1 Unresolved chain link angles: 2 Unresolved non-hydrogen bonds: 140 Unresolved non-hydrogen angles: 183 Unresolved non-hydrogen dihedrals: 107 Unresolved non-hydrogen chiralities: 15 Planarities with less than four sites: {'GLN:plan1': 3, 'ASN:plan1': 1, 'TRP:plan': 1, 'ASP:plan': 8, 'GLU:plan': 7, 'ARG:plan': 2} Unresolved non-hydrogen planarities: 74 Chain: "V" Number of atoms: 2011 Number of conformers: 1 Conformer: "" Number of residues, atoms: 257, 2011 Classifications: {'peptide': 257} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PCIS': 1, 'PTRANS': 7, 'TRANS': 248} Chain breaks: 1 Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 25 Unresolved non-hydrogen angles: 31 Unresolved non-hydrogen dihedrals: 20 Unresolved non-hydrogen chiralities: 4 Planarities with less than four sites: {'GLN:plan1': 1} Unresolved non-hydrogen planarities: 3 Chain: "W" Number of atoms: 1300 Number of conformers: 1 Conformer: "" Number of residues, atoms: 193, 1300 Classifications: {'peptide': 193} Incomplete info: {'truncation_to_alanine': 12} Link IDs: {'PTRANS': 9, 'TRANS': 183} Unresolved chain link angles: 4 Unresolved non-hydrogen bonds: 179 Unresolved non-hydrogen angles: 245 Unresolved non-hydrogen dihedrals: 126 Unresolved non-hydrogen chiralities: 31 Planarities with less than four sites: {'GLN:plan1': 2, 'HIS:plan': 3, 'ASN:plan1': 7, 'ASP:plan': 5, 'PHE:plan': 1, 'GLU:plan': 5, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 85 Chain: "Y" Number of atoms: 316 Number of conformers: 1 Conformer: "" Number of residues, atoms: 59, 316 Classifications: {'peptide': 59} Incomplete info: {'truncation_to_alanine': 44} Link IDs: {'PTRANS': 2, 'TRANS': 56} Chain breaks: 1 Unresolved chain link angles: 2 Unresolved non-hydrogen bonds: 201 Unresolved non-hydrogen angles: 262 Unresolved non-hydrogen dihedrals: 174 Unresolved non-hydrogen chiralities: 7 Planarities with less than four sites: {'GLN:plan1': 2, 'ARG:plan': 1, 'TYR:plan': 1, 'ASN:plan1': 2, 'TRP:plan': 3, 'HIS:plan': 2, 'PHE:plan': 2, 'GLU:plan': 12, 'ASP:plan': 9} Unresolved non-hydrogen planarities: 148 Chain: "Z" Number of atoms: 3608 Number of conformers: 1 Conformer: "" Number of residues, atoms: 732, 3608 Classifications: {'peptide': 732} Incomplete info: {'truncation_to_alanine': 613} Link IDs: {'CIS': 1, 'PTRANS': 25, 'TRANS': 705} Chain breaks: 4 Unresolved chain link angles: 25 Unresolved non-hydrogen bonds: 2133 Unresolved non-hydrogen angles: 2736 Unresolved non-hydrogen dihedrals: 1740 Unresolved non-hydrogen chiralities: 222 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 17, 'TYR:plan': 24, 'ASN:plan1': 37, 'TRP:plan': 5, 'ASP:plan': 37, 'PHE:plan': 22, 'GLU:plan': 55, 'ARG:plan': 33} Unresolved non-hydrogen planarities: 1113 Chain: "B" Number of atoms: 1845 Number of conformers: 1 Conformer: "" Number of residues, atoms: 244, 1845 Classifications: {'peptide': 244} Incomplete info: {'truncation_to_alanine': 15} Link IDs: {'PTRANS': 8, 'TRANS': 235} Unresolved non-hydrogen bonds: 59 Unresolved non-hydrogen angles: 68 Unresolved non-hydrogen dihedrals: 52 Planarities with less than four sites: {'PHE:plan': 1, 'GLU:plan': 3, 'ARG:plan': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 34 Chain: "C" Number of atoms: 1737 Number of conformers: 1 Conformer: "" Number of residues, atoms: 231, 1737 Classifications: {'peptide': 231} Incomplete info: {'truncation_to_alanine': 14} Link IDs: {'PTRANS': 10, 'TRANS': 220} Unresolved non-hydrogen bonds: 70 Unresolved non-hydrogen angles: 87 Unresolved non-hydrogen dihedrals: 63 Unresolved non-hydrogen chiralities: 3 Planarities with less than four sites: {'TYR:plan': 1, 'GLU:plan': 1, 'ARG:plan': 4, 'ASN:plan1': 1, 'TRP:plan': 1} Unresolved non-hydrogen planarities: 43 Chain: "D" Number of atoms: 1916 Number of conformers: 1 Conformer: "" Number of residues, atoms: 250, 1916 Classifications: {'peptide': 250} Incomplete info: {'truncation_to_alanine': 16} Link IDs: {'PTRANS': 5, 'TRANS': 244} Unresolved non-hydrogen bonds: 55 Unresolved non-hydrogen angles: 61 Unresolved non-hydrogen dihedrals: 49 Unresolved non-hydrogen chiralities: 3 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 1, 'ASN:plan1': 1} Unresolved non-hydrogen planarities: 11 Chain: "E" Number of atoms: 1724 Number of conformers: 1 Conformer: "" Number of residues, atoms: 243, 1724 Classifications: {'peptide': 243} Incomplete info: {'truncation_to_alanine': 55} Link IDs: {'PTRANS': 6, 'TRANS': 236} Unresolved non-hydrogen bonds: 201 Unresolved non-hydrogen angles: 240 Unresolved non-hydrogen dihedrals: 166 Unresolved non-hydrogen chiralities: 17 Planarities with less than four sites: {'GLN:plan1': 1, 'ASN:plan1': 1, 'ASP:plan': 1, 'PHE:plan': 2, 'GLU:plan': 11, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 86 Chain: "F" Number of atoms: 1766 Number of conformers: 1 Conformer: "" Number of residues, atoms: 234, 1766 Classifications: {'peptide': 234} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 6} Link IDs: {'PTRANS': 8, 'TRANS': 225} Unresolved non-hydrogen bonds: 24 Unresolved non-hydrogen angles: 25 Unresolved non-hydrogen dihedrals: 23 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "G" Number of atoms: 1850 Number of conformers: 1 Conformer: "" Number of residues, atoms: 238, 1850 Classifications: {'peptide': 238} Incomplete info: {'truncation_to_alanine': 6} Link IDs: {'PTRANS': 10, 'TRANS': 227} Unresolved non-hydrogen bonds: 23 Unresolved non-hydrogen angles: 27 Unresolved non-hydrogen dihedrals: 19 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 2, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 15 Chain: "X" Number of atoms: 1873 Number of conformers: 1 Conformer: "" Number of residues, atoms: 243, 1873 Classifications: {'peptide': 243} Incomplete info: {'truncation_to_alanine': 7} Link IDs: {'PTRANS': 5, 'TRANS': 237} Unresolved non-hydrogen bonds: 29 Unresolved non-hydrogen angles: 33 Unresolved non-hydrogen dihedrals: 25 Planarities with less than four sites: {'GLU:plan': 2, 'ASN:plan1': 1, 'ARG:plan': 1} Unresolved non-hydrogen planarities: 16 Chain: "a" Number of atoms: 1509 Number of conformers: 1 Conformer: "" Number of residues, atoms: 202, 1509 Classifications: {'peptide': 202} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PTRANS': 6, 'TRANS': 195} Unresolved non-hydrogen bonds: 5 Unresolved non-hydrogen angles: 7 Unresolved non-hydrogen dihedrals: 3 Unresolved non-hydrogen chiralities: 2 Chain: "b" Number of atoms: 1643 Number of conformers: 1 Conformer: "" Number of residues, atoms: 220, 1643 Classifications: {'peptide': 220} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PCIS': 1, 'PTRANS': 8, 'TRANS': 210} Unresolved non-hydrogen bonds: 16 Unresolved non-hydrogen angles: 17 Unresolved non-hydrogen dihedrals: 15 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "c" Number of atoms: 1585 Number of conformers: 1 Conformer: "" Number of residues, atoms: 204, 1585 Classifications: {'peptide': 204} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 9, 'TRANS': 194} Unresolved non-hydrogen bonds: 6 Unresolved non-hydrogen angles: 7 Unresolved non-hydrogen dihedrals: 5 Planarities with less than four sites: {'ARG:plan': 1} Unresolved non-hydrogen planarities: 5 Chain: "d" Number of atoms: 1570 Number of conformers: 1 Conformer: "" Number of residues, atoms: 199, 1570 Classifications: {'peptide': 199} Incomplete info: {'truncation_to_alanine': 6} Link IDs: {'PTRANS': 8, 'TRANS': 190} Unresolved non-hydrogen bonds: 26 Unresolved non-hydrogen angles: 29 Unresolved non-hydrogen dihedrals: 23 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 1, 'ARG:plan': 1} Unresolved non-hydrogen planarities: 13 Chain: "e" Number of atoms: 1548 Number of conformers: 1 Conformer: "" Number of residues, atoms: 201, 1548 Classifications: {'peptide': 201} Incomplete info: {'truncation_to_alanine': 3} Link IDs: {'PTRANS': 2, 'TRANS': 198} Unresolved non-hydrogen bonds: 11 Unresolved non-hydrogen angles: 13 Unresolved non-hydrogen dihedrals: 9 Unresolved non-hydrogen chiralities: 1 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "f" Number of atoms: 1644 Number of conformers: 1 Conformer: "" Number of residues, atoms: 213, 1644 Classifications: {'peptide': 213} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 3} Link IDs: {'PTRANS': 6, 'TRANS': 206} Unresolved non-hydrogen bonds: 10 Unresolved non-hydrogen angles: 11 Unresolved non-hydrogen dihedrals: 9 Unresolved non-hydrogen chiralities: 1 Chain: "g" Number of atoms: 1672 Number of conformers: 1 Conformer: "" Number of residues, atoms: 216, 1672 Classifications: {'peptide': 216} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 208} Unresolved non-hydrogen bonds: 15 Unresolved non-hydrogen angles: 16 Unresolved non-hydrogen dihedrals: 14 Planarities with less than four sites: {'ARG:plan': 1} Unresolved non-hydrogen planarities: 5 Chain: "h" Number of atoms: 1853 Number of conformers: 1 Conformer: "" Number of residues, atoms: 244, 1853 Classifications: {'peptide': 244} Incomplete info: {'truncation_to_alanine': 13} Link IDs: {'PTRANS': 8, 'TRANS': 235} Unresolved non-hydrogen bonds: 51 Unresolved non-hydrogen angles: 60 Unresolved non-hydrogen dihedrals: 44 Planarities with less than four sites: {'PHE:plan': 1, 'GLU:plan': 3, 'ARG:plan': 2, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 34 Chain: "i" Number of atoms: 1744 Number of conformers: 1 Conformer: "" Number of residues, atoms: 231, 1744 Classifications: {'peptide': 231} Incomplete info: {'truncation_to_alanine': 12} Link IDs: {'PTRANS': 10, 'TRANS': 220} Unresolved non-hydrogen bonds: 63 Unresolved non-hydrogen angles: 79 Unresolved non-hydrogen dihedrals: 57 Unresolved non-hydrogen chiralities: 2 Planarities with less than four sites: {'TYR:plan': 1, 'GLU:plan': 1, 'ARG:plan': 4, 'ASN:plan1': 1, 'TRP:plan': 1} Unresolved non-hydrogen planarities: 43 Chain: "j" Number of atoms: 1913 Number of conformers: 1 Conformer: "" Number of residues, atoms: 250, 1913 Classifications: {'peptide': 250} Incomplete info: {'truncation_to_alanine': 17} Link IDs: {'PTRANS': 5, 'TRANS': 244} Unresolved non-hydrogen bonds: 58 Unresolved non-hydrogen angles: 65 Unresolved non-hydrogen dihedrals: 51 Unresolved non-hydrogen chiralities: 4 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 1, 'ASN:plan1': 1} Unresolved non-hydrogen planarities: 11 Chain: "k" Number of atoms: 1691 Number of conformers: 1 Conformer: "" Number of residues, atoms: 243, 1691 Classifications: {'peptide': 243} Incomplete info: {'truncation_to_alanine': 65} Link IDs: {'PTRANS': 6, 'TRANS': 236} Unresolved non-hydrogen bonds: 233 Unresolved non-hydrogen angles: 279 Unresolved non-hydrogen dihedrals: 189 Unresolved non-hydrogen chiralities: 19 Planarities with less than four sites: {'GLN:plan1': 2, 'ASN:plan1': 2, 'ASP:plan': 2, 'PHE:plan': 1, 'GLU:plan': 15, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 106 Chain: "l" Number of atoms: 1726 Number of conformers: 1 Conformer: "" Number of residues, atoms: 234, 1726 Classifications: {'peptide': 234} Modifications used: {'COO': 1} Incomplete info: {'n_c_alpha_c_only': 7, 'truncation_to_alanine': 4} Link IDs: {'PTRANS': 8, 'TRANS': 225} Unresolved chain link angles: 41 Unresolved non-hydrogen bonds: 65 Unresolved non-hydrogen angles: 68 Unresolved non-hydrogen dihedrals: 24 Planarities with less than four sites: {'TYR:plan': 1} Unresolved non-hydrogen planarities: 7 Chain: "m" Number of atoms: 1850 Number of conformers: 1 Conformer: "" Number of residues, atoms: 238, 1850 Classifications: {'peptide': 238} Incomplete info: {'truncation_to_alanine': 6} Link IDs: {'PTRANS': 10, 'TRANS': 227} Unresolved non-hydrogen bonds: 23 Unresolved non-hydrogen angles: 27 Unresolved non-hydrogen dihedrals: 19 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 2, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 15 Chain: "n" Number of atoms: 1873 Number of conformers: 1 Conformer: "" Number of residues, atoms: 243, 1873 Classifications: {'peptide': 243} Incomplete info: {'truncation_to_alanine': 7} Link IDs: {'PTRANS': 5, 'TRANS': 237} Unresolved non-hydrogen bonds: 29 Unresolved non-hydrogen angles: 33 Unresolved non-hydrogen dihedrals: 25 Planarities with less than four sites: {'GLU:plan': 2, 'ASN:plan1': 1, 'ARG:plan': 1} Unresolved non-hydrogen planarities: 16 Chain: "o" Number of atoms: 1509 Number of conformers: 1 Conformer: "" Number of residues, atoms: 202, 1509 Classifications: {'peptide': 202} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PTRANS': 6, 'TRANS': 195} Unresolved non-hydrogen bonds: 5 Unresolved non-hydrogen angles: 7 Unresolved non-hydrogen dihedrals: 3 Unresolved non-hydrogen chiralities: 2 Chain: "p" Number of atoms: 1643 Number of conformers: 1 Conformer: "" Number of residues, atoms: 220, 1643 Classifications: {'peptide': 220} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 9, 'TRANS': 210} Unresolved non-hydrogen bonds: 16 Unresolved non-hydrogen angles: 17 Unresolved non-hydrogen dihedrals: 15 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "q" Number of atoms: 1585 Number of conformers: 1 Conformer: "" Number of residues, atoms: 204, 1585 Classifications: {'peptide': 204} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 1} Link IDs: {'PTRANS': 9, 'TRANS': 194} Unresolved non-hydrogen bonds: 6 Unresolved non-hydrogen angles: 7 Unresolved non-hydrogen dihedrals: 5 Planarities with less than four sites: {'ARG:plan': 1} Unresolved non-hydrogen planarities: 5 Chain: "r" Number of atoms: 1570 Number of conformers: 1 Conformer: "" Number of residues, atoms: 199, 1570 Classifications: {'peptide': 199} Incomplete info: {'truncation_to_alanine': 6} Link IDs: {'PTRANS': 8, 'TRANS': 190} Unresolved non-hydrogen bonds: 26 Unresolved non-hydrogen angles: 29 Unresolved non-hydrogen dihedrals: 23 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 1, 'ARG:plan': 1} Unresolved non-hydrogen planarities: 13 Chain: "s" Number of atoms: 1551 Number of conformers: 1 Conformer: "" Number of residues, atoms: 201, 1551 Classifications: {'peptide': 201} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PTRANS': 2, 'TRANS': 198} Unresolved non-hydrogen bonds: 8 Unresolved non-hydrogen angles: 9 Unresolved non-hydrogen dihedrals: 7 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "t" Number of atoms: 1644 Number of conformers: 1 Conformer: "" Number of residues, atoms: 213, 1644 Classifications: {'peptide': 213} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 3} Link IDs: {'PTRANS': 6, 'TRANS': 206} Unresolved non-hydrogen bonds: 10 Unresolved non-hydrogen angles: 11 Unresolved non-hydrogen dihedrals: 9 Unresolved non-hydrogen chiralities: 1 Chain: "u" Number of atoms: 1678 Number of conformers: 1 Conformer: "" Number of residues, atoms: 217, 1678 Classifications: {'peptide': 217} Incomplete info: {'truncation_to_alanine': 4} Link IDs: {'PTRANS': 7, 'TRANS': 209} Unresolved non-hydrogen bonds: 13 Unresolved non-hydrogen angles: 14 Unresolved non-hydrogen dihedrals: 12 Planarities with less than four sites: {'GLU:plan': 1} Unresolved non-hydrogen planarities: 4 Chain: "v" Number of atoms: 2893 Number of conformers: 1 Conformer: "" Number of residues, atoms: 380, 2893 Classifications: {'peptide': 380} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PTRANS': 21, 'TRANS': 358} Chain breaks: 1 Unresolved non-hydrogen bonds: 92 Unresolved non-hydrogen angles: 117 Unresolved non-hydrogen dihedrals: 68 Unresolved non-hydrogen chiralities: 13 Planarities with less than four sites: {'GLN:plan1': 3, 'GLU:plan': 3, 'ASN:plan1': 1, 'ARG:plan': 1, 'ASP:plan': 4} Unresolved non-hydrogen planarities: 42 Chain: "w" Number of atoms: 2720 Number of conformers: 1 Conformer: "" Number of residues, atoms: 359, 2720 Classifications: {'peptide': 359} Incomplete info: {'truncation_to_alanine': 26} Link IDs: {'PCIS': 1, 'PTRANS': 15, 'TRANS': 342} Chain breaks: 1 Unresolved non-hydrogen bonds: 113 Unresolved non-hydrogen angles: 142 Unresolved non-hydrogen dihedrals: 91 Unresolved non-hydrogen chiralities: 6 Planarities with less than four sites: {'GLN:plan1': 3, 'TYR:plan': 1, 'ASN:plan1': 1, 'ASP:plan': 1, 'PHE:plan': 1, 'GLU:plan': 8, 'ARG:plan': 3} Unresolved non-hydrogen planarities: 80 Chain: "x" Number of atoms: 2820 Number of conformers: 1 Conformer: "" Number of residues, atoms: 358, 2820 Classifications: {'peptide': 358} Incomplete info: {'truncation_to_alanine': 2} Link IDs: {'PCIS': 1, 'PTRANS': 15, 'TRANS': 341} Chain breaks: 1 Unresolved non-hydrogen bonds: 17 Unresolved non-hydrogen angles: 22 Unresolved non-hydrogen dihedrals: 12 Unresolved non-hydrogen chiralities: 2 Planarities with less than four sites: {'GLU:plan': 2, 'ASP:plan': 1} Unresolved non-hydrogen planarities: 10 Chain: "y" Number of atoms: 3039 Number of conformers: 1 Conformer: "" Number of residues, atoms: 380, 3039 Classifications: {'peptide': 380} Link IDs: {'PTRANS': 17, 'TRANS': 362} Chain: "z" Number of atoms: 2860 Number of conformers: 1 Conformer: "" Number of residues, atoms: 375, 2860 Classifications: {'peptide': 375} Incomplete info: {'truncation_to_alanine': 31} Link IDs: {'PCIS': 1, 'PTRANS': 17, 'TRANS': 356} Unresolved non-hydrogen bonds: 121 Unresolved non-hydrogen angles: 149 Unresolved non-hydrogen dihedrals: 98 Unresolved non-hydrogen chiralities: 9 Planarities with less than four sites: {'GLN:plan1': 2, 'HIS:plan': 1, 'TYR:plan': 1, 'ASN:plan1': 1, 'ASP:plan': 2, 'GLU:plan': 7, 'ARG:plan': 2} Unresolved non-hydrogen planarities: 67 Chain: "0" Number of atoms: 2858 Number of conformers: 1 Conformer: "" Number of residues, atoms: 376, 2858 Classifications: {'peptide': 376} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PCIS': 1, 'PTRANS': 16, 'TRANS': 358} Chain breaks: 1 Unresolved non-hydrogen bonds: 93 Unresolved non-hydrogen angles: 115 Unresolved non-hydrogen dihedrals: 73 Unresolved non-hydrogen chiralities: 11 Planarities with less than four sites: {'GLN:plan1': 1, 'GLU:plan': 3, 'HIS:plan': 1, 'ARG:plan': 3, 'ASP:plan': 2} Unresolved non-hydrogen planarities: 42 Chain: "1" Number of atoms: 5449 Number of conformers: 1 Conformer: "" Number of residues, atoms: 821, 5449 Classifications: {'peptide': 821} Incomplete info: {'truncation_to_alanine': 43} Link IDs: {'PTRANS': 29, 'TRANS': 791} Chain breaks: 4 Unresolved chain link angles: 17 Unresolved non-hydrogen bonds: 989 Unresolved non-hydrogen angles: 1346 Unresolved non-hydrogen dihedrals: 749 Unresolved non-hydrogen chiralities: 125 Planarities with less than four sites: {'GLN:plan1': 25, 'ARG:plan': 15, 'TYR:plan': 12, 'ASN:plan1': 28, 'HIS:plan': 12, 'PHE:plan': 14, 'GLU:plan': 33, 'ASP:plan': 26} Unresolved non-hydrogen planarities: 557 Chain: "2" Number of atoms: 2375 Number of conformers: 1 Conformer: "" Number of residues, atoms: 372, 2375 Classifications: {'peptide': 372} Incomplete info: {'truncation_to_alanine': 54} Link IDs: {'PTRANS': 12, 'TRANS': 359} Chain breaks: 1 Unresolved chain link angles: 10 Unresolved non-hydrogen bonds: 657 Unresolved non-hydrogen angles: 900 Unresolved non-hydrogen dihedrals: 513 Unresolved non-hydrogen chiralities: 81 Planarities with less than four sites: {'GLN:plan1': 18, 'ARG:plan': 11, 'TYR:plan': 6, 'ASN:plan1': 14, 'TRP:plan': 3, 'HIS:plan': 10, 'PHE:plan': 10, 'GLU:plan': 20, 'ASP:plan': 16} Unresolved non-hydrogen planarities: 405 Chain: "3" Number of atoms: 2831 Number of conformers: 1 Conformer: "" Number of residues, atoms: 413, 2831 Classifications: {'peptide': 413} Incomplete info: {'truncation_to_alanine': 61} Link IDs: {'CIS': 1, 'PTRANS': 6, 'TRANS': 405} Chain breaks: 5 Unresolved chain link angles: 3 Unresolved non-hydrogen bonds: 551 Unresolved non-hydrogen angles: 715 Unresolved non-hydrogen dihedrals: 418 Unresolved non-hydrogen chiralities: 61 Planarities with less than four sites: {'GLN:plan1': 17, 'TYR:plan': 4, 'ASN:plan1': 8, 'TRP:plan': 1, 'ASP:plan': 13, 'PHE:plan': 2, 'GLU:plan': 28, 'ARG:plan': 13} Unresolved non-hydrogen planarities: 310 Chain: "4" Number of atoms: 2956 Number of conformers: 1 Conformer: "" Number of residues, atoms: 421, 2956 Classifications: {'peptide': 421} Incomplete info: {'truncation_to_alanine': 85} Link IDs: {'PCIS': 1, 'PTRANS': 9, 'TRANS': 410} Unresolved chain link angles: 5 Unresolved non-hydrogen bonds: 383 Unresolved non-hydrogen angles: 489 Unresolved non-hydrogen dihedrals: 301 Unresolved non-hydrogen chiralities: 42 Planarities with less than four sites: {'GLN:plan1': 8, 'ASP:plan': 9, 'TYR:plan': 2, 'ASN:plan1': 2, 'HIS:plan': 2, 'PHE:plan': 4, 'GLU:plan': 13, 'ARG:plan': 9} Unresolved non-hydrogen planarities: 199 Chain: "5" Number of atoms: 2770 Number of conformers: 1 Conformer: "" Number of residues, atoms: 376, 2770 Classifications: {'peptide': 376} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PCIS': 1, 'PTRANS': 6, 'TRANS': 368} Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 335 Unresolved non-hydrogen angles: 435 Unresolved non-hydrogen dihedrals: 254 Unresolved non-hydrogen chiralities: 31 Planarities with less than four sites: {'GLN:plan1': 3, 'ASP:plan': 12, 'TYR:plan': 3, 'ASN:plan1': 6, 'TRP:plan': 1, 'HIS:plan': 1, 'GLU:plan': 16, 'ARG:plan': 15} Unresolved non-hydrogen planarities: 207 Chain: "6" Number of atoms: 2732 Number of conformers: 1 Conformer: "" Number of residues, atoms: 421, 2732 Classifications: {'peptide': 421} Incomplete info: {'truncation_to_alanine': 92} Link IDs: {'PTRANS': 9, 'TRANS': 411} Chain breaks: 3 Unresolved chain link angles: 4 Unresolved non-hydrogen bonds: 759 Unresolved non-hydrogen angles: 994 Unresolved non-hydrogen dihedrals: 607 Unresolved non-hydrogen chiralities: 67 Planarities with less than four sites: {'GLN:plan1': 20, 'HIS:plan': 9, 'TYR:plan': 12, 'ASN:plan1': 11, 'ASP:plan': 12, 'PHE:plan': 10, 'GLU:plan': 25, 'ARG:plan': 22} Unresolved non-hydrogen planarities: 487 Chain: "7" Number of atoms: 1699 Number of conformers: 1 Conformer: "" Number of residues, atoms: 258, 1699 Classifications: {'peptide': 258} Incomplete info: {'truncation_to_alanine': 27} Link IDs: {'PTRANS': 11, 'TRANS': 246} Chain breaks: 1 Unresolved chain link angles: 9 Unresolved non-hydrogen bonds: 452 Unresolved non-hydrogen angles: 607 Unresolved non-hydrogen dihedrals: 366 Unresolved non-hydrogen chiralities: 42 Planarities with less than four sites: {'GLN:plan1': 12, 'HIS:plan': 2, 'TYR:plan': 9, 'ASN:plan1': 9, 'TRP:plan': 2, 'ASP:plan': 7, 'PHE:plan': 7, 'GLU:plan': 13, 'ARG:plan': 8} Unresolved non-hydrogen planarities: 271 Chain: "8" Number of atoms: 2131 Number of conformers: 1 Conformer: "" Number of residues, atoms: 283, 2131 Classifications: {'peptide': 283} Incomplete info: {'truncation_to_alanine': 18} Link IDs: {'PTRANS': 8, 'TRANS': 274} Chain breaks: 1 Unresolved chain link angles: 2 Unresolved non-hydrogen bonds: 140 Unresolved non-hydrogen angles: 183 Unresolved non-hydrogen dihedrals: 108 Unresolved non-hydrogen chiralities: 15 Planarities with less than four sites: {'GLN:plan1': 3, 'ASN:plan1': 1, 'TRP:plan': 1, 'ASP:plan': 8, 'GLU:plan': 7, 'ARG:plan': 2} Unresolved non-hydrogen planarities: 74 Chain: "9" Number of atoms: 2009 Number of conformers: 1 Conformer: "" Number of residues, atoms: 257, 2009 Classifications: {'peptide': 257} Modifications used: {'COO': 1} Incomplete info: {'truncation_to_alanine': 3} Link IDs: {'PCIS': 1, 'PTRANS': 7, 'TRANS': 248} Chain breaks: 1 Unresolved chain link angles: 1 Unresolved non-hydrogen bonds: 27 Unresolved non-hydrogen angles: 34 Unresolved non-hydrogen dihedrals: 21 Unresolved non-hydrogen chiralities: 5 Planarities with less than four sites: {'GLN:plan1': 1} Unresolved non-hydrogen planarities: 3 Chain: "AA" Number of atoms: 1300 Number of conformers: 1 Conformer: "" Number of residues, atoms: 193, 1300 Classifications: {'peptide': 193} Incomplete info: {'truncation_to_alanine': 12} Link IDs: {'PTRANS': 9, 'TRANS': 183} Unresolved chain link angles: 4 Unresolved non-hydrogen bonds: 179 Unresolved non-hydrogen angles: 245 Unresolved non-hydrogen dihedrals: 126 Unresolved non-hydrogen chiralities: 31 Planarities with less than four sites: {'GLN:plan1': 2, 'HIS:plan': 3, 'ASN:plan1': 7, 'ASP:plan': 5, 'PHE:plan': 1, 'GLU:plan': 5, 'ARG:plan': 4} Unresolved non-hydrogen planarities: 85 Chain: "AB" Number of atoms: 316 Number of conformers: 1 Conformer: "" Number of residues, atoms: 59, 316 Classifications: {'peptide': 59} Incomplete info: {'truncation_to_alanine': 44} Link IDs: {'PTRANS': 2, 'TRANS': 56} Chain breaks: 1 Unresolved chain link angles: 2 Unresolved non-hydrogen bonds: 201 Unresolved non-hydrogen angles: 262 Unresolved non-hydrogen dihedrals: 174 Unresolved non-hydrogen chiralities: 7 Planarities with less than four sites: {'GLN:plan1': 2, 'ARG:plan': 1, 'TYR:plan': 1, 'ASN:plan1': 2, 'TRP:plan': 3, 'HIS:plan': 2, 'PHE:plan': 2, 'GLU:plan': 12, 'ASP:plan': 9} Unresolved non-hydrogen planarities: 148 Chain: "AC" Number of atoms: 3608 Number of conformers: 1 Conformer: "" Number of residues, atoms: 732, 3608 Classifications: {'peptide': 732} Incomplete info: {'truncation_to_alanine': 613} Link IDs: {'CIS': 1, 'PTRANS': 25, 'TRANS': 705} Chain breaks: 4 Unresolved chain link angles: 25 Unresolved non-hydrogen bonds: 2133 Unresolved non-hydrogen angles: 2736 Unresolved non-hydrogen dihedrals: 1740 Unresolved non-hydrogen chiralities: 222 Planarities with less than four sites: {'GLN:plan1': 19, 'HIS:plan': 17, 'TYR:plan': 24, 'ASN:plan1': 37, 'TRP:plan': 5, 'ASP:plan': 37, 'PHE:plan': 22, 'GLU:plan': 55, 'ARG:plan': 33} Unresolved non-hydrogen planarities: 1113 Chain: "I" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "H" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "L" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "M" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "J" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "K" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "v" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "w" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "x" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "y" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "z" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Chain: "0" Number of atoms: 27 Number of conformers: 1 Conformer: "" Number of residues, atoms: 1, 27 Unusual residues: {'ADP': 1} Classifications: {'undetermined': 1} Time building chain proxies: 54.61, per 1000 atoms: 0.38 Number of scatterers: 142753 At special positions: 0 Unit cell: (465.45, 281.41, 220.42, 90, 90, 90) Space group: P 1 (No. 1) Number of sites at special positions: 0 Number of scattering types: 5 Type Number sf(0) S 646 16.00 P 24 15.00 O 27061 8.00 N 24862 7.00 C 90160 6.00 sf(0) = scattering factor at diffraction angle 0. Number of disulfides: simple=0, symmetry=0 Automatic linking Parameters for automatic linking Linking & cutoffs Metal : Auto - 3.50 Amino acid : False - 1.90 Carbohydrate : True - 1.99 Ligands : True - 1.99 Small molecules : False - 1.98 Amino acid - RNA/DNA : False Number of custom bonds: simple=12, symmetry=0 Number of additional bonds: simple=12, symmetry=0 Coordination: Other bonds: Time building additional restraints: 45.96 Conformation dependent library (CDL) restraints added in 20.1 seconds 39434 Ramachandran restraints generated. 19717 Oldfield, 0 Emsley, 19717 emsley8k and 0 Phi/Psi/2. Adding C-beta torsion restraints... Number of C-beta restraints generated: 37448 Finding SS restraints... Warning!!! ksdssp method is not applicable for structures that cannot fit in PDB format. Switching to from_ca. running find_ss_from_ca liberal... Secondary structure from input PDB file: 822 helices and 108 sheets defined 61.4% alpha, 11.6% beta 0 base pairs and 0 stacking pairs defined. Time for finding SS restraints: 56.03 Creating SS restraints... Processing helix chain 'I' and resid 65 through 84 removed outlier: 3.507A pdb=" N LYS I 69 " --> pdb=" O LEU I 65 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N GLN I 84 " --> pdb=" O ARG I 80 " (cutoff:3.500A) Processing helix chain 'I' and resid 91 through 104 removed outlier: 3.942A pdb=" N ARG I 103 " --> pdb=" O VAL I 99 " (cutoff:3.500A) removed outlier: 4.547A pdb=" N GLY I 104 " --> pdb=" O ASP I 100 " (cutoff:3.500A) Processing helix chain 'I' and resid 140 through 145 removed outlier: 4.365A pdb=" N LEU I 144 " --> pdb=" O ASP I 140 " (cutoff:3.500A) removed outlier: 4.802A pdb=" N GLU I 145 " --> pdb=" O LYS I 141 " (cutoff:3.500A) No H-bonds generated for 'chain 'I' and resid 140 through 145' Processing helix chain 'I' and resid 168 through 175 removed outlier: 4.491A pdb=" N THR I 172 " --> pdb=" O ASP I 168 " (cutoff:3.500A) removed outlier: 4.294A pdb=" N VAL I 173 " --> pdb=" O PRO I 169 " (cutoff:3.500A) Processing helix chain 'I' and resid 190 through 201 removed outlier: 5.417A pdb=" N ILE I 194 " --> pdb=" O LEU I 190 " (cutoff:3.500A) Processing helix chain 'I' and resid 202 through 207 Processing helix chain 'I' and resid 208 through 215 removed outlier: 5.845A pdb=" N GLU I 212 " --> pdb=" O PRO I 208 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N GLU I 213 " --> pdb=" O GLU I 209 " (cutoff:3.500A) Processing helix chain 'I' and resid 231 through 243 removed outlier: 3.553A pdb=" N ALA I 240 " --> pdb=" O ALA I 236 " (cutoff:3.500A) Processing helix chain 'I' and resid 251 through 257 removed outlier: 5.349A pdb=" N GLN I 257 " --> pdb=" O SER I 253 " (cutoff:3.500A) Processing helix chain 'I' and resid 261 through 278 removed outlier: 5.011A pdb=" N LYS I 265 " --> pdb=" O GLY I 261 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LEU I 266 " --> pdb=" O ASP I 262 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N VAL I 267 " --> pdb=" O GLY I 263 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ALA I 278 " --> pdb=" O ALA I 274 " (cutoff:3.500A) Processing helix chain 'I' and resid 286 through 292 removed outlier: 4.087A pdb=" N ILE I 290 " --> pdb=" O GLU I 286 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N GLY I 291 " --> pdb=" O ILE I 287 " (cutoff:3.500A) Processing helix chain 'I' and resid 301 through 317 removed outlier: 4.547A pdb=" N ILE I 305 " --> pdb=" O GLY I 301 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N ARG I 307 " --> pdb=" O ARG I 303 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASP I 317 " --> pdb=" O LEU I 313 " (cutoff:3.500A) Processing helix chain 'I' and resid 338 through 343 Processing helix chain 'I' and resid 358 through 373 removed outlier: 4.162A pdb=" N LYS I 362 " --> pdb=" O GLU I 358 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N ARG I 371 " --> pdb=" O ILE I 367 " (cutoff:3.500A) removed outlier: 5.267A pdb=" N MET I 372 " --> pdb=" O HIS I 368 " (cutoff:3.500A) removed outlier: 5.461A pdb=" N THR I 373 " --> pdb=" O THR I 369 " (cutoff:3.500A) Processing helix chain 'I' and resid 379 through 387 removed outlier: 4.094A pdb=" N LEU I 383 " --> pdb=" O THR I 379 " (cutoff:3.500A) removed outlier: 3.639A pdb=" N LYS I 387 " --> pdb=" O LEU I 383 " (cutoff:3.500A) Processing helix chain 'I' and resid 391 through 410 removed outlier: 4.099A pdb=" N ILE I 395 " --> pdb=" O SER I 391 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LYS I 396 " --> pdb=" O GLY I 392 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N GLY I 403 " --> pdb=" O CYS I 399 " (cutoff:3.500A) Processing helix chain 'I' and resid 415 through 427 removed outlier: 3.957A pdb=" N PHE I 419 " --> pdb=" O THR I 415 " (cutoff:3.500A) Processing helix chain 'w' and resid 65 through 84 removed outlier: 3.507A pdb=" N LYS w 69 " --> pdb=" O LEU w 65 " (cutoff:3.500A) removed outlier: 3.617A pdb=" N GLN w 84 " --> pdb=" O ARG w 80 " (cutoff:3.500A) Processing helix chain 'w' and resid 91 through 104 removed outlier: 3.942A pdb=" N ARG w 103 " --> pdb=" O VAL w 99 " (cutoff:3.500A) removed outlier: 4.547A pdb=" N GLY w 104 " --> pdb=" O ASP w 100 " (cutoff:3.500A) Processing helix chain 'w' and resid 140 through 145 removed outlier: 4.365A pdb=" N LEU w 144 " --> pdb=" O ASP w 140 " (cutoff:3.500A) removed outlier: 4.803A pdb=" N GLU w 145 " --> pdb=" O LYS w 141 " (cutoff:3.500A) No H-bonds generated for 'chain 'w' and resid 140 through 145' Processing helix chain 'w' and resid 168 through 175 removed outlier: 4.491A pdb=" N THR w 172 " --> pdb=" O ASP w 168 " (cutoff:3.500A) removed outlier: 4.294A pdb=" N VAL w 173 " --> pdb=" O PRO w 169 " (cutoff:3.500A) Processing helix chain 'w' and resid 190 through 201 removed outlier: 5.417A pdb=" N ILE w 194 " --> pdb=" O LEU w 190 " (cutoff:3.500A) Processing helix chain 'w' and resid 202 through 207 Processing helix chain 'w' and resid 208 through 215 removed outlier: 5.845A pdb=" N GLU w 212 " --> pdb=" O PRO w 208 " (cutoff:3.500A) removed outlier: 4.309A pdb=" N GLU w 213 " --> pdb=" O GLU w 209 " (cutoff:3.500A) Processing helix chain 'w' and resid 231 through 243 removed outlier: 3.553A pdb=" N ALA w 240 " --> pdb=" O ALA w 236 " (cutoff:3.500A) Processing helix chain 'w' and resid 251 through 257 removed outlier: 5.349A pdb=" N GLN w 257 " --> pdb=" O SER w 253 " (cutoff:3.500A) Processing helix chain 'w' and resid 261 through 278 removed outlier: 5.011A pdb=" N LYS w 265 " --> pdb=" O GLY w 261 " (cutoff:3.500A) removed outlier: 3.788A pdb=" N LEU w 266 " --> pdb=" O ASP w 262 " (cutoff:3.500A) removed outlier: 3.835A pdb=" N VAL w 267 " --> pdb=" O GLY w 263 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ALA w 278 " --> pdb=" O ALA w 274 " (cutoff:3.500A) Processing helix chain 'w' and resid 286 through 292 removed outlier: 4.087A pdb=" N ILE w 290 " --> pdb=" O GLU w 286 " (cutoff:3.500A) removed outlier: 4.494A pdb=" N GLY w 291 " --> pdb=" O ILE w 287 " (cutoff:3.500A) Processing helix chain 'w' and resid 301 through 317 removed outlier: 4.547A pdb=" N ILE w 305 " --> pdb=" O GLY w 301 " (cutoff:3.500A) removed outlier: 4.295A pdb=" N ARG w 307 " --> pdb=" O ARG w 303 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N ASP w 317 " --> pdb=" O LEU w 313 " (cutoff:3.500A) Processing helix chain 'w' and resid 338 through 343 Processing helix chain 'w' and resid 358 through 373 removed outlier: 4.162A pdb=" N LYS w 362 " --> pdb=" O GLU w 358 " (cutoff:3.500A) removed outlier: 4.042A pdb=" N ARG w 371 " --> pdb=" O ILE w 367 " (cutoff:3.500A) removed outlier: 5.267A pdb=" N MET w 372 " --> pdb=" O HIS w 368 " (cutoff:3.500A) removed outlier: 5.461A pdb=" N THR w 373 " --> pdb=" O THR w 369 " (cutoff:3.500A) Processing helix chain 'w' and resid 379 through 387 removed outlier: 4.095A pdb=" N LEU w 383 " --> pdb=" O THR w 379 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LYS w 387 " --> pdb=" O LEU w 383 " (cutoff:3.500A) Processing helix chain 'w' and resid 391 through 410 removed outlier: 4.099A pdb=" N ILE w 395 " --> pdb=" O SER w 391 " (cutoff:3.500A) removed outlier: 3.868A pdb=" N LYS w 396 " --> pdb=" O GLY w 392 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N GLY w 403 " --> pdb=" O CYS w 399 " (cutoff:3.500A) Processing helix chain 'w' and resid 415 through 427 removed outlier: 4.784A pdb=" N PHE w 419 " --> pdb=" O THR w 415 " (cutoff:3.500A) Processing helix chain 'H' and resid 47 through 72 removed outlier: 3.692A pdb=" N ASN H 60 " --> pdb=" O LEU H 56 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N ILE H 65 " --> pdb=" O GLU H 61 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N LYS H 66 " --> pdb=" O LEU H 62 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N GLU H 67 " --> pdb=" O THR H 63 " (cutoff:3.500A) removed outlier: 3.836A pdb=" N LEU H 72 " --> pdb=" O SER H 68 " (cutoff:3.500A) Processing helix chain 'H' and resid 82 through 94 removed outlier: 4.092A pdb=" N THR H 86 " --> pdb=" O ALA H 82 " (cutoff:3.500A) Proline residue: H 92 - end of helix Processing helix chain 'H' and resid 158 through 165 removed outlier: 4.228A pdb=" N THR H 162 " --> pdb=" O ASP H 158 " (cutoff:3.500A) removed outlier: 4.480A pdb=" N MET H 163 " --> pdb=" O PRO H 159 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N MET H 164 " --> pdb=" O THR H 160 " (cutoff:3.500A) removed outlier: 4.376A pdb=" N GLN H 165 " --> pdb=" O VAL H 161 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 158 through 165' Processing helix chain 'H' and resid 173 through 178 removed outlier: 4.222A pdb=" N VAL H 177 " --> pdb=" O THR H 173 " (cutoff:3.500A) removed outlier: 4.699A pdb=" N GLY H 178 " --> pdb=" O TYR H 174 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 173 through 178' Processing helix chain 'H' and resid 180 through 192 removed outlier: 3.934A pdb=" N GLU H 185 " --> pdb=" O LYS H 181 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N GLU H 189 " --> pdb=" O GLU H 185 " (cutoff:3.500A) Processing helix chain 'H' and resid 198 through 205 removed outlier: 5.156A pdb=" N VAL H 202 " --> pdb=" O PRO H 198 " (cutoff:3.500A) Processing helix chain 'H' and resid 221 through 233 Processing helix chain 'H' and resid 241 through 246 removed outlier: 3.584A pdb=" N LEU H 245 " --> pdb=" O ILE H 241 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N VAL H 246 " --> pdb=" O GLY H 242 " (cutoff:3.500A) No H-bonds generated for 'chain 'H' and resid 241 through 246' Processing helix chain 'H' and resid 251 through 268 removed outlier: 5.519A pdb=" N ARG H 255 " --> pdb=" O GLY H 251 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N MET H 256 " --> pdb=" O GLU H 252 " (cutoff:3.500A) removed outlier: 3.912A pdb=" N LYS H 267 " --> pdb=" O MET H 263 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N LYS H 268 " --> pdb=" O ALA H 264 " (cutoff:3.500A) Processing helix chain 'H' and resid 276 through 281 removed outlier: 4.045A pdb=" N ILE H 280 " --> pdb=" O GLU H 276 " (cutoff:3.500A) Processing helix chain 'H' and resid 292 through 307 removed outlier: 3.506A pdb=" N GLN H 296 " --> pdb=" O ASP H 292 " (cutoff:3.500A) Processing helix chain 'H' and resid 328 through 333 Processing helix chain 'H' and resid 347 through 360 removed outlier: 4.954A pdb=" N ARG H 351 " --> pdb=" O ASP H 347 " (cutoff:3.500A) Processing helix chain 'H' and resid 369 through 378 removed outlier: 4.027A pdb=" N LEU H 373 " --> pdb=" O ARG H 369 " (cutoff:3.500A) Proline residue: H 378 - end of helix Processing helix chain 'H' and resid 381 through 400 removed outlier: 3.694A pdb=" N ILE H 385 " --> pdb=" O THR H 381 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N ARG H 386 " --> pdb=" O GLY H 382 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N GLY H 393 " --> pdb=" O CYS H 389 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N MET H 394 " --> pdb=" O THR H 390 " (cutoff:3.500A) removed outlier: 4.357A pdb=" N ARG H 400 " --> pdb=" O ALA H 396 " (cutoff:3.500A) Processing helix chain 'H' and resid 405 through 421 removed outlier: 4.007A pdb=" N LYS H 418 " --> pdb=" O ASN H 414 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N SER H 419 " --> pdb=" O LYS H 415 " (cutoff:3.500A) Processing helix chain 'H' and resid 425 through 432 removed outlier: 3.553A pdb=" N MET H 430 " --> pdb=" O THR H 426 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N THR H 431 " --> pdb=" O PRO H 427 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N TYR H 432 " --> pdb=" O ARG H 428 " (cutoff:3.500A) Processing helix chain 'v' and resid 47 through 72 removed outlier: 3.692A pdb=" N ASN v 60 " --> pdb=" O LEU v 56 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N ILE v 65 " --> pdb=" O GLU v 61 " (cutoff:3.500A) removed outlier: 3.787A pdb=" N LYS v 66 " --> pdb=" O LEU v 62 " (cutoff:3.500A) removed outlier: 4.076A pdb=" N GLU v 67 " --> pdb=" O THR v 63 " (cutoff:3.500A) removed outlier: 3.836A pdb=" N LEU v 72 " --> pdb=" O SER v 68 " (cutoff:3.500A) Processing helix chain 'v' and resid 82 through 94 removed outlier: 4.092A pdb=" N THR v 86 " --> pdb=" O ALA v 82 " (cutoff:3.500A) Proline residue: v 92 - end of helix Processing helix chain 'v' and resid 158 through 165 removed outlier: 4.228A pdb=" N THR v 162 " --> pdb=" O ASP v 158 " (cutoff:3.500A) removed outlier: 4.480A pdb=" N MET v 163 " --> pdb=" O PRO v 159 " (cutoff:3.500A) removed outlier: 4.329A pdb=" N MET v 164 " --> pdb=" O THR v 160 " (cutoff:3.500A) removed outlier: 4.376A pdb=" N GLN v 165 " --> pdb=" O VAL v 161 " (cutoff:3.500A) No H-bonds generated for 'chain 'v' and resid 158 through 165' Processing helix chain 'v' and resid 173 through 178 removed outlier: 4.222A pdb=" N VAL v 177 " --> pdb=" O THR v 173 " (cutoff:3.500A) removed outlier: 4.699A pdb=" N GLY v 178 " --> pdb=" O TYR v 174 " (cutoff:3.500A) No H-bonds generated for 'chain 'v' and resid 173 through 178' Processing helix chain 'v' and resid 180 through 192 removed outlier: 3.934A pdb=" N GLU v 185 " --> pdb=" O LYS v 181 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N GLU v 189 " --> pdb=" O GLU v 185 " (cutoff:3.500A) Processing helix chain 'v' and resid 198 through 205 removed outlier: 5.156A pdb=" N VAL v 202 " --> pdb=" O PRO v 198 " (cutoff:3.500A) Processing helix chain 'v' and resid 221 through 233 Processing helix chain 'v' and resid 241 through 246 removed outlier: 3.584A pdb=" N LEU v 245 " --> pdb=" O ILE v 241 " (cutoff:3.500A) removed outlier: 3.588A pdb=" N VAL v 246 " --> pdb=" O GLY v 242 " (cutoff:3.500A) No H-bonds generated for 'chain 'v' and resid 241 through 246' Processing helix chain 'v' and resid 251 through 268 removed outlier: 5.519A pdb=" N ARG v 255 " --> pdb=" O GLY v 251 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N MET v 256 " --> pdb=" O GLU v 252 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N LYS v 267 " --> pdb=" O MET v 263 " (cutoff:3.500A) removed outlier: 4.218A pdb=" N LYS v 268 " --> pdb=" O ALA v 264 " (cutoff:3.500A) Processing helix chain 'v' and resid 276 through 281 removed outlier: 4.045A pdb=" N ILE v 280 " --> pdb=" O GLU v 276 " (cutoff:3.500A) Processing helix chain 'v' and resid 292 through 307 removed outlier: 3.506A pdb=" N GLN v 296 " --> pdb=" O ASP v 292 " (cutoff:3.500A) Processing helix chain 'v' and resid 328 through 333 Processing helix chain 'v' and resid 347 through 360 removed outlier: 4.020A pdb=" N ARG v 351 " --> pdb=" O ASP v 347 " (cutoff:3.500A) removed outlier: 3.520A pdb=" N HIS v 353 " --> pdb=" O GLU v 349 " (cutoff:3.500A) Processing helix chain 'v' and resid 369 through 378 removed outlier: 4.027A pdb=" N LEU v 373 " --> pdb=" O ARG v 369 " (cutoff:3.500A) Proline residue: v 378 - end of helix Processing helix chain 'v' and resid 381 through 400 removed outlier: 3.694A pdb=" N ILE v 385 " --> pdb=" O THR v 381 " (cutoff:3.500A) removed outlier: 3.708A pdb=" N ARG v 386 " --> pdb=" O GLY v 382 " (cutoff:3.500A) removed outlier: 4.146A pdb=" N GLY v 393 " --> pdb=" O CYS v 389 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N MET v 394 " --> pdb=" O THR v 390 " (cutoff:3.500A) removed outlier: 4.357A pdb=" N ARG v 400 " --> pdb=" O ALA v 396 " (cutoff:3.500A) Processing helix chain 'v' and resid 405 through 421 removed outlier: 4.007A pdb=" N LYS v 418 " --> pdb=" O ASN v 414 " (cutoff:3.500A) removed outlier: 4.039A pdb=" N SER v 419 " --> pdb=" O LYS v 415 " (cutoff:3.500A) Processing helix chain 'v' and resid 425 through 432 removed outlier: 3.553A pdb=" N MET v 430 " --> pdb=" O THR v 426 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N THR v 431 " --> pdb=" O PRO v 427 " (cutoff:3.500A) removed outlier: 4.168A pdb=" N TYR v 432 " --> pdb=" O ARG v 428 " (cutoff:3.500A) Processing helix chain 'L' and resid 17 through 53 removed outlier: 3.844A pdb=" N ARG L 25 " --> pdb=" O GLU L 21 " (cutoff:3.500A) removed outlier: 4.275A pdb=" N LYS L 34 " --> pdb=" O ARG L 30 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N GLN L 39 " --> pdb=" O GLU L 35 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N TYR L 40 " --> pdb=" O LEU L 36 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N GLU L 41 " --> pdb=" O THR L 37 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEU L 50 " --> pdb=" O ASP L 46 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N GLN L 51 " --> pdb=" O LEU L 47 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N SER L 52 " --> pdb=" O LYS L 48 " (cutoff:3.500A) removed outlier: 4.984A pdb=" N VAL L 53 " --> pdb=" O ALA L 49 " (cutoff:3.500A) Processing helix chain 'L' and resid 88 through 93 removed outlier: 5.665A pdb=" N LYS L 93 " --> pdb=" O LYS L 89 " (cutoff:3.500A) Processing helix chain 'L' and resid 116 through 123 removed outlier: 4.554A pdb=" N TYR L 120 " --> pdb=" O ASP L 116 " (cutoff:3.500A) removed outlier: 4.853A pdb=" N ASN L 121 " --> pdb=" O PRO L 117 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N MET L 122 " --> pdb=" O LEU L 118 " (cutoff:3.500A) Processing helix chain 'L' and resid 131 through 136 removed outlier: 4.905A pdb=" N ILE L 135 " --> pdb=" O SER L 131 " (cutoff:3.500A) removed outlier: 4.660A pdb=" N GLY L 136 " --> pdb=" O TYR L 132 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 131 through 136' Processing helix chain 'L' and resid 138 through 155 removed outlier: 4.254A pdb=" N ILE L 142 " --> pdb=" O LEU L 138 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N ARG L 143 " --> pdb=" O SER L 139 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N LEU L 151 " --> pdb=" O GLU L 147 " (cutoff:3.500A) Proline residue: L 152 - end of helix Processing helix chain 'L' and resid 156 through 163 removed outlier: 3.778A pdb=" N GLN L 160 " --> pdb=" O PRO L 156 " (cutoff:3.500A) removed outlier: 5.266A pdb=" N ARG L 161 " --> pdb=" O GLU L 157 " (cutoff:3.500A) removed outlier: 3.777A pdb=" N VAL L 162 " --> pdb=" O LEU L 158 " (cutoff:3.500A) Processing helix chain 'L' and resid 179 through 191 removed outlier: 3.853A pdb=" N LEU L 183 " --> pdb=" O GLY L 179 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ARG L 185 " --> pdb=" O THR L 181 " (cutoff:3.500A) Processing helix chain 'L' and resid 199 through 204 removed outlier: 6.491A pdb=" N ILE L 203 " --> pdb=" O VAL L 199 " (cutoff:3.500A) removed outlier: 5.937A pdb=" N VAL L 204 " --> pdb=" O SER L 200 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 199 through 204' Processing helix chain 'L' and resid 209 through 226 removed outlier: 3.822A pdb=" N LEU L 214 " --> pdb=" O GLU L 210 " (cutoff:3.500A) Processing helix chain 'L' and resid 247 through 266 removed outlier: 3.955A pdb=" N ARG L 251 " --> pdb=" O THR L 247 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N GLU L 252 " --> pdb=" O SER L 248 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ILE L 253 " --> pdb=" O ALA L 249 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEU L 260 " --> pdb=" O THR L 256 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N LEU L 261 " --> pdb=" O LEU L 257 " (cutoff:3.500A) Processing helix chain 'L' and resid 286 through 291 removed outlier: 3.742A pdb=" N LEU L 290 " --> pdb=" O ASP L 286 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N ARG L 291 " --> pdb=" O PRO L 287 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 286 through 291' Processing helix chain 'L' and resid 305 through 318 removed outlier: 4.091A pdb=" N ILE L 315 " --> pdb=" O ASP L 311 " (cutoff:3.500A) Processing helix chain 'L' and resid 327 through 336 removed outlier: 4.558A pdb=" N ASP L 336 " --> pdb=" O VAL L 332 " (cutoff:3.500A) Processing helix chain 'L' and resid 339 through 358 removed outlier: 3.683A pdb=" N LEU L 343 " --> pdb=" O ASN L 339 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N ALA L 357 " --> pdb=" O PHE L 353 " (cutoff:3.500A) removed outlier: 4.522A pdb=" N ASP L 358 " --> pdb=" O ALA L 354 " (cutoff:3.500A) Processing helix chain 'L' and resid 363 through 379 removed outlier: 4.213A pdb=" N PHE L 367 " --> pdb=" O VAL L 363 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N MET L 368 " --> pdb=" O GLN L 364 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LYS L 369 " --> pdb=" O GLU L 365 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N ALA L 370 " --> pdb=" O ASP L 366 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N SER L 377 " --> pdb=" O LYS L 373 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N LYS L 378 " --> pdb=" O VAL L 374 " (cutoff:3.500A) removed outlier: 4.592A pdb=" N LYS L 379 " --> pdb=" O ALA L 375 " (cutoff:3.500A) Processing helix chain 'L' and resid 235 through 240 removed outlier: 3.877A pdb=" N GLY L 240 " --> pdb=" O ILE L 235 " (cutoff:3.500A) No H-bonds generated for 'chain 'L' and resid 235 through 240' Processing helix chain 'z' and resid 17 through 53 removed outlier: 3.844A pdb=" N ARG z 25 " --> pdb=" O GLU z 21 " (cutoff:3.500A) removed outlier: 4.275A pdb=" N LYS z 34 " --> pdb=" O ARG z 30 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N GLN z 39 " --> pdb=" O GLU z 35 " (cutoff:3.500A) removed outlier: 4.069A pdb=" N TYR z 40 " --> pdb=" O LEU z 36 " (cutoff:3.500A) removed outlier: 3.663A pdb=" N GLU z 41 " --> pdb=" O THR z 37 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N LEU z 50 " --> pdb=" O ASP z 46 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N GLN z 51 " --> pdb=" O LEU z 47 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N SER z 52 " --> pdb=" O LYS z 48 " (cutoff:3.500A) removed outlier: 4.984A pdb=" N VAL z 53 " --> pdb=" O ALA z 49 " (cutoff:3.500A) Processing helix chain 'z' and resid 88 through 93 removed outlier: 5.665A pdb=" N LYS z 93 " --> pdb=" O LYS z 89 " (cutoff:3.500A) Processing helix chain 'z' and resid 116 through 123 removed outlier: 4.554A pdb=" N TYR z 120 " --> pdb=" O ASP z 116 " (cutoff:3.500A) removed outlier: 4.853A pdb=" N ASN z 121 " --> pdb=" O PRO z 117 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N MET z 122 " --> pdb=" O LEU z 118 " (cutoff:3.500A) Processing helix chain 'z' and resid 131 through 136 removed outlier: 4.905A pdb=" N ILE z 135 " --> pdb=" O SER z 131 " (cutoff:3.500A) removed outlier: 4.660A pdb=" N GLY z 136 " --> pdb=" O TYR z 132 " (cutoff:3.500A) No H-bonds generated for 'chain 'z' and resid 131 through 136' Processing helix chain 'z' and resid 138 through 155 removed outlier: 4.254A pdb=" N ILE z 142 " --> pdb=" O LEU z 138 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N ARG z 143 " --> pdb=" O SER z 139 " (cutoff:3.500A) removed outlier: 4.006A pdb=" N LEU z 151 " --> pdb=" O GLU z 147 " (cutoff:3.500A) Proline residue: z 152 - end of helix Processing helix chain 'z' and resid 156 through 163 removed outlier: 3.778A pdb=" N GLN z 160 " --> pdb=" O PRO z 156 " (cutoff:3.500A) removed outlier: 5.266A pdb=" N ARG z 161 " --> pdb=" O GLU z 157 " (cutoff:3.500A) removed outlier: 3.777A pdb=" N VAL z 162 " --> pdb=" O LEU z 158 " (cutoff:3.500A) Processing helix chain 'z' and resid 179 through 191 removed outlier: 3.853A pdb=" N LEU z 183 " --> pdb=" O GLY z 179 " (cutoff:3.500A) removed outlier: 3.562A pdb=" N ARG z 185 " --> pdb=" O THR z 181 " (cutoff:3.500A) Processing helix chain 'z' and resid 199 through 204 removed outlier: 6.491A pdb=" N ILE z 203 " --> pdb=" O VAL z 199 " (cutoff:3.500A) removed outlier: 5.937A pdb=" N VAL z 204 " --> pdb=" O SER z 200 " (cutoff:3.500A) No H-bonds generated for 'chain 'z' and resid 199 through 204' Processing helix chain 'z' and resid 209 through 226 removed outlier: 3.822A pdb=" N LEU z 214 " --> pdb=" O GLU z 210 " (cutoff:3.500A) Processing helix chain 'z' and resid 247 through 266 removed outlier: 3.955A pdb=" N ARG z 251 " --> pdb=" O THR z 247 " (cutoff:3.500A) removed outlier: 4.170A pdb=" N GLU z 252 " --> pdb=" O SER z 248 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N ILE z 253 " --> pdb=" O ALA z 249 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEU z 260 " --> pdb=" O THR z 256 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N LEU z 261 " --> pdb=" O LEU z 257 " (cutoff:3.500A) Processing helix chain 'z' and resid 286 through 291 removed outlier: 3.742A pdb=" N LEU z 290 " --> pdb=" O ASP z 286 " (cutoff:3.500A) removed outlier: 3.857A pdb=" N ARG z 291 " --> pdb=" O PRO z 287 " (cutoff:3.500A) No H-bonds generated for 'chain 'z' and resid 286 through 291' Processing helix chain 'z' and resid 305 through 318 removed outlier: 4.091A pdb=" N ILE z 315 " --> pdb=" O ASP z 311 " (cutoff:3.500A) Processing helix chain 'z' and resid 327 through 336 removed outlier: 4.558A pdb=" N ASP z 336 " --> pdb=" O VAL z 332 " (cutoff:3.500A) Processing helix chain 'z' and resid 339 through 358 removed outlier: 3.683A pdb=" N LEU z 343 " --> pdb=" O ASN z 339 " (cutoff:3.500A) removed outlier: 4.662A pdb=" N ALA z 357 " --> pdb=" O PHE z 353 " (cutoff:3.500A) removed outlier: 4.522A pdb=" N ASP z 358 " --> pdb=" O ALA z 354 " (cutoff:3.500A) Processing helix chain 'z' and resid 363 through 379 removed outlier: 4.213A pdb=" N PHE z 367 " --> pdb=" O VAL z 363 " (cutoff:3.500A) removed outlier: 3.988A pdb=" N MET z 368 " --> pdb=" O GLN z 364 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LYS z 369 " --> pdb=" O GLU z 365 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N ALA z 370 " --> pdb=" O ASP z 366 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N SER z 377 " --> pdb=" O LYS z 373 " (cutoff:3.500A) removed outlier: 4.071A pdb=" N LYS z 378 " --> pdb=" O VAL z 374 " (cutoff:3.500A) removed outlier: 4.592A pdb=" N LYS z 379 " --> pdb=" O ALA z 375 " (cutoff:3.500A) Processing helix chain 'z' and resid 235 through 240 removed outlier: 3.877A pdb=" N GLY z 240 " --> pdb=" O ILE z 235 " (cutoff:3.500A) No H-bonds generated for 'chain 'z' and resid 235 through 240' Processing helix chain 'M' and resid 44 through 83 removed outlier: 3.582A pdb=" N ILE M 54 " --> pdb=" O SER M 50 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N MET M 55 " --> pdb=" O GLU M 51 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N LEU M 60 " --> pdb=" O LYS M 56 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N ARG M 61 " --> pdb=" O SER M 57 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LEU M 66 " --> pdb=" O VAL M 62 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ASP M 71 " --> pdb=" O GLN M 67 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N LYS M 74 " --> pdb=" O LYS M 70 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N ASN M 76 " --> pdb=" O LYS M 72 " (cutoff:3.500A) Processing helix chain 'M' and resid 141 through 146 removed outlier: 4.319A pdb=" N LYS M 146 " --> pdb=" O ALA M 142 " (cutoff:3.500A) Processing helix chain 'M' and resid 169 through 176 removed outlier: 3.678A pdb=" N ALA M 174 " --> pdb=" O SER M 170 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N MET M 175 " --> pdb=" O ARG M 171 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N GLU M 176 " --> pdb=" O VAL M 172 " (cutoff:3.500A) Processing helix chain 'M' and resid 184 through 189 removed outlier: 5.317A pdb=" N ILE M 188 " --> pdb=" O GLN M 184 " (cutoff:3.500A) removed outlier: 4.875A pdb=" N GLY M 189 " --> pdb=" O TYR M 185 " (cutoff:3.500A) No H-bonds generated for 'chain 'M' and resid 184 through 189' Processing helix chain 'M' and resid 191 through 208 removed outlier: 3.645A pdb=" N ILE M 202 " --> pdb=" O LEU M 198 " (cutoff:3.500A) removed outlier: 5.030A pdb=" N LEU M 204 " --> pdb=" O GLU M 200 " (cutoff:3.500A) Proline residue: M 205 - end of helix Processing helix chain 'M' and resid 209 through 216 removed outlier: 3.906A pdb=" N GLU M 213 " --> pdb=" O LYS M 209 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LEU M 215 " --> pdb=" O LYS M 211 " (cutoff:3.500A) Processing helix chain 'M' and resid 232 through 244 removed outlier: 4.981A pdb=" N LEU M 236 " --> pdb=" O GLY M 232 " (cutoff:3.500A) Processing helix chain 'M' and resid 252 through 258 removed outlier: 3.771A pdb=" N LEU M 256 " --> pdb=" O ALA M 252 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N VAL M 257 " --> pdb=" O GLY M 253 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N GLN M 258 " --> pdb=" O PRO M 254 " (cutoff:3.500A) No H-bonds generated for 'chain 'M' and resid 252 through 258' Processing helix chain 'M' and resid 262 through 279 removed outlier: 3.766A pdb=" N LYS M 266 " --> pdb=" O GLY M 262 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N LYS M 276 " --> pdb=" O PHE M 272 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N LYS M 278 " --> pdb=" O LEU M 274 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ALA M 279 " --> pdb=" O ALA M 275 " (cutoff:3.500A) Processing helix chain 'M' and resid 287 through 292 removed outlier: 4.437A pdb=" N ILE M 291 " --> pdb=" O GLU M 287 " (cutoff:3.500A) Processing helix chain 'M' and resid 303 through 318 removed outlier: 4.207A pdb=" N GLN M 307 " --> pdb=" O ASP M 303 " (cutoff:3.500A) Processing helix chain 'M' and resid 339 through 344 removed outlier: 4.522A pdb=" N LEU M 343 " --> pdb=" O ASP M 339 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N ARG M 344 " --> pdb=" O PRO M 340 " (cutoff:3.500A) No H-bonds generated for 'chain 'M' and resid 339 through 344' Processing helix chain 'M' and resid 358 through 374 removed outlier: 4.904A pdb=" N ARG M 362 " --> pdb=" O ASN M 358 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LYS M 372 " --> pdb=" O ILE M 368 " (cutoff:3.500A) removed outlier: 4.743A pdb=" N MET M 373 " --> pdb=" O HIS M 369 " (cutoff:3.500A) removed outlier: 5.328A pdb=" N ASN M 374 " --> pdb=" O SER M 370 " (cutoff:3.500A) Processing helix chain 'M' and resid 380 through 389 removed outlier: 5.700A pdb=" N ASP M 389 " --> pdb=" O ALA M 385 " (cutoff:3.500A) Processing helix chain 'M' and resid 392 through 411 removed outlier: 4.080A pdb=" N CYS M 396 " --> pdb=" O ASN M 392 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N LYS M 397 " --> pdb=" O GLY M 393 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N ARG M 410 " --> pdb=" O ILE M 406 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N GLY M 411 " --> pdb=" O ALA M 407 " (cutoff:3.500A) Processing helix chain 'M' and resid 416 through 429 removed outlier: 3.512A pdb=" N TYR M 420 " --> pdb=" O THR M 416 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N ALA M 429 " --> pdb=" O LEU M 425 " (cutoff:3.500A) Processing helix chain '0' and resid 44 through 83 removed outlier: 3.582A pdb=" N ILE 0 54 " --> pdb=" O SER 0 50 " (cutoff:3.500A) removed outlier: 3.959A pdb=" N MET 0 55 " --> pdb=" O GLU 0 51 " (cutoff:3.500A) removed outlier: 3.643A pdb=" N LEU 0 60 " --> pdb=" O LYS 0 56 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N ARG 0 61 " --> pdb=" O SER 0 57 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N LEU 0 66 " --> pdb=" O VAL 0 62 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ASP 0 71 " --> pdb=" O GLN 0 67 " (cutoff:3.500A) removed outlier: 3.715A pdb=" N LYS 0 74 " --> pdb=" O LYS 0 70 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N ASN 0 76 " --> pdb=" O LYS 0 72 " (cutoff:3.500A) Processing helix chain '0' and resid 141 through 146 removed outlier: 4.319A pdb=" N LYS 0 146 " --> pdb=" O ALA 0 142 " (cutoff:3.500A) Processing helix chain '0' and resid 169 through 176 removed outlier: 3.678A pdb=" N ALA 0 174 " --> pdb=" O SER 0 170 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N MET 0 175 " --> pdb=" O ARG 0 171 " (cutoff:3.500A) removed outlier: 4.430A pdb=" N GLU 0 176 " --> pdb=" O VAL 0 172 " (cutoff:3.500A) Processing helix chain '0' and resid 184 through 189 removed outlier: 5.317A pdb=" N ILE 0 188 " --> pdb=" O GLN 0 184 " (cutoff:3.500A) removed outlier: 4.875A pdb=" N GLY 0 189 " --> pdb=" O TYR 0 185 " (cutoff:3.500A) No H-bonds generated for 'chain '0' and resid 184 through 189' Processing helix chain '0' and resid 191 through 208 removed outlier: 3.645A pdb=" N ILE 0 202 " --> pdb=" O LEU 0 198 " (cutoff:3.500A) removed outlier: 5.030A pdb=" N LEU 0 204 " --> pdb=" O GLU 0 200 " (cutoff:3.500A) Proline residue: 0 205 - end of helix Processing helix chain '0' and resid 209 through 216 removed outlier: 3.906A pdb=" N GLU 0 213 " --> pdb=" O LYS 0 209 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LEU 0 215 " --> pdb=" O LYS 0 211 " (cutoff:3.500A) Processing helix chain '0' and resid 232 through 244 removed outlier: 4.981A pdb=" N LEU 0 236 " --> pdb=" O GLY 0 232 " (cutoff:3.500A) Processing helix chain '0' and resid 252 through 258 removed outlier: 3.771A pdb=" N LEU 0 256 " --> pdb=" O ALA 0 252 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N VAL 0 257 " --> pdb=" O GLY 0 253 " (cutoff:3.500A) removed outlier: 4.961A pdb=" N GLN 0 258 " --> pdb=" O PRO 0 254 " (cutoff:3.500A) No H-bonds generated for 'chain '0' and resid 252 through 258' Processing helix chain '0' and resid 262 through 279 removed outlier: 3.766A pdb=" N LYS 0 266 " --> pdb=" O GLY 0 262 " (cutoff:3.500A) removed outlier: 3.833A pdb=" N LYS 0 276 " --> pdb=" O PHE 0 272 " (cutoff:3.500A) removed outlier: 3.802A pdb=" N LYS 0 278 " --> pdb=" O LEU 0 274 " (cutoff:3.500A) removed outlier: 3.822A pdb=" N ALA 0 279 " --> pdb=" O ALA 0 275 " (cutoff:3.500A) Processing helix chain '0' and resid 287 through 292 removed outlier: 4.437A pdb=" N ILE 0 291 " --> pdb=" O GLU 0 287 " (cutoff:3.500A) Processing helix chain '0' and resid 303 through 318 removed outlier: 4.207A pdb=" N GLN 0 307 " --> pdb=" O ASP 0 303 " (cutoff:3.500A) Processing helix chain '0' and resid 339 through 344 removed outlier: 4.522A pdb=" N LEU 0 343 " --> pdb=" O ASP 0 339 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N ARG 0 344 " --> pdb=" O PRO 0 340 " (cutoff:3.500A) No H-bonds generated for 'chain '0' and resid 339 through 344' Processing helix chain '0' and resid 358 through 374 removed outlier: 4.905A pdb=" N ARG 0 362 " --> pdb=" O ASN 0 358 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N LYS 0 372 " --> pdb=" O ILE 0 368 " (cutoff:3.500A) removed outlier: 4.743A pdb=" N MET 0 373 " --> pdb=" O HIS 0 369 " (cutoff:3.500A) removed outlier: 5.328A pdb=" N ASN 0 374 " --> pdb=" O SER 0 370 " (cutoff:3.500A) Processing helix chain '0' and resid 380 through 389 removed outlier: 5.700A pdb=" N ASP 0 389 " --> pdb=" O ALA 0 385 " (cutoff:3.500A) Processing helix chain '0' and resid 392 through 411 removed outlier: 4.080A pdb=" N CYS 0 396 " --> pdb=" O ASN 0 392 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N LYS 0 397 " --> pdb=" O GLY 0 393 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N ARG 0 410 " --> pdb=" O ILE 0 406 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N GLY 0 411 " --> pdb=" O ALA 0 407 " (cutoff:3.500A) Processing helix chain '0' and resid 416 through 429 removed outlier: 3.512A pdb=" N TYR 0 420 " --> pdb=" O THR 0 416 " (cutoff:3.500A) removed outlier: 4.808A pdb=" N ALA 0 429 " --> pdb=" O LEU 0 425 " (cutoff:3.500A) Processing helix chain 'J' and resid 24 through 70 removed outlier: 3.821A pdb=" N GLU J 29 " --> pdb=" O LEU J 25 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLU J 30 " --> pdb=" O SER J 26 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N LEU J 31 " --> pdb=" O LYS J 27 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ASN J 36 " --> pdb=" O GLN J 32 " (cutoff:3.500A) removed outlier: 4.517A pdb=" N ASP J 37 " --> pdb=" O LEU J 33 " (cutoff:3.500A) removed outlier: 5.753A pdb=" N LYS J 38 " --> pdb=" O ILE J 34 " (cutoff:3.500A) removed outlier: 5.626A pdb=" N SER J 39 " --> pdb=" O VAL J 35 " (cutoff:3.500A) removed outlier: 4.310A pdb=" N GLN J 40 " --> pdb=" O ASN J 36 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N ASN J 41 " --> pdb=" O ASP J 37 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N GLN J 48 " --> pdb=" O ARG J 44 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N ASN J 53 " --> pdb=" O ARG J 49 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N GLU J 61 " --> pdb=" O ARG J 57 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLU J 62 " --> pdb=" O LEU J 58 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N LEU J 63 " --> pdb=" O LEU J 59 " (cutoff:3.500A) removed outlier: 5.385A pdb=" N GLN J 64 " --> pdb=" O ARG J 60 " (cutoff:3.500A) removed outlier: 5.610A pdb=" N LEU J 65 " --> pdb=" O GLU J 61 " (cutoff:3.500A) removed outlier: 4.477A pdb=" N LEU J 66 " --> pdb=" O GLU J 62 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N GLN J 67 " --> pdb=" O LEU J 63 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N GLU J 68 " --> pdb=" O GLN J 64 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N GLN J 69 " --> pdb=" O LEU J 65 " (cutoff:3.500A) removed outlier: 5.793A pdb=" N GLY J 70 " --> pdb=" O LEU J 66 " (cutoff:3.500A) Processing helix chain 'J' and resid 104 through 109 removed outlier: 4.587A pdb=" N VAL J 108 " --> pdb=" O ASP J 104 " (cutoff:3.500A) removed outlier: 5.293A pdb=" N THR J 109 " --> pdb=" O ILE J 105 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 104 through 109' Processing helix chain 'J' and resid 132 through 142 removed outlier: 3.985A pdb=" N SER J 136 " --> pdb=" O ASP J 132 " (cutoff:3.500A) Processing helix chain 'J' and resid 154 through 171 removed outlier: 4.759A pdb=" N LEU J 167 " --> pdb=" O GLU J 163 " (cutoff:3.500A) Proline residue: J 168 - end of helix Processing helix chain 'J' and resid 172 through 179 Processing helix chain 'J' and resid 195 through 208 removed outlier: 4.467A pdb=" N LEU J 199 " --> pdb=" O GLY J 195 " (cutoff:3.500A) Processing helix chain 'J' and resid 217 through 224 Processing helix chain 'J' and resid 231 through 242 removed outlier: 4.060A pdb=" N PHE J 235 " --> pdb=" O VAL J 231 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N VAL J 236 " --> pdb=" O ARG J 232 " (cutoff:3.500A) Processing helix chain 'J' and resid 267 through 282 removed outlier: 3.895A pdb=" N LEU J 276 " --> pdb=" O THR J 272 " (cutoff:3.500A) removed outlier: 5.450A pdb=" N GLY J 282 " --> pdb=" O ASN J 278 " (cutoff:3.500A) Processing helix chain 'J' and resid 297 through 302 removed outlier: 4.080A pdb=" N LEU J 301 " --> pdb=" O ARG J 297 " (cutoff:3.500A) removed outlier: 5.697A pdb=" N ASP J 302 " --> pdb=" O ILE J 298 " (cutoff:3.500A) No H-bonds generated for 'chain 'J' and resid 297 through 302' Processing helix chain 'J' and resid 322 through 337 removed outlier: 3.709A pdb=" N LYS J 335 " --> pdb=" O ILE J 331 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N MET J 336 " --> pdb=" O HIS J 332 " (cutoff:3.500A) removed outlier: 5.045A pdb=" N ASN J 337 " --> pdb=" O SER J 333 " (cutoff:3.500A) Processing helix chain 'J' and resid 343 through 352 removed outlier: 3.652A pdb=" N ILE J 347 " --> pdb=" O ASN J 343 " (cutoff:3.500A) Proline residue: J 352 - end of helix Processing helix chain 'J' and resid 355 through 374 removed outlier: 3.828A pdb=" N VAL J 359 " --> pdb=" O SER J 355 " (cutoff:3.500A) removed outlier: 4.337A pdb=" N LYS J 360 " --> pdb=" O GLY J 356 " (cutoff:3.500A) Processing helix chain 'J' and resid 379 through 397 removed outlier: 4.098A pdb=" N PHE J 383 " --> pdb=" O THR J 379 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ALA J 388 " --> pdb=" O GLU J 384 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N LYS J 397 " --> pdb=" O LYS J 393 " (cutoff:3.500A) Processing helix chain 'x' and resid 24 through 70 removed outlier: 3.821A pdb=" N GLU x 29 " --> pdb=" O LEU x 25 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N GLU x 30 " --> pdb=" O SER x 26 " (cutoff:3.500A) removed outlier: 4.242A pdb=" N LEU x 31 " --> pdb=" O LYS x 27 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ASN x 36 " --> pdb=" O GLN x 32 " (cutoff:3.500A) removed outlier: 4.517A pdb=" N ASP x 37 " --> pdb=" O LEU x 33 " (cutoff:3.500A) removed outlier: 5.753A pdb=" N LYS x 38 " --> pdb=" O ILE x 34 " (cutoff:3.500A) removed outlier: 5.626A pdb=" N SER x 39 " --> pdb=" O VAL x 35 " (cutoff:3.500A) removed outlier: 4.310A pdb=" N GLN x 40 " --> pdb=" O ASN x 36 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N ASN x 41 " --> pdb=" O ASP x 37 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N GLN x 48 " --> pdb=" O ARG x 44 " (cutoff:3.500A) removed outlier: 4.062A pdb=" N ASN x 53 " --> pdb=" O ARG x 49 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N GLU x 61 " --> pdb=" O ARG x 57 " (cutoff:3.500A) removed outlier: 3.685A pdb=" N GLU x 62 " --> pdb=" O LEU x 58 " (cutoff:3.500A) removed outlier: 4.110A pdb=" N LEU x 63 " --> pdb=" O LEU x 59 " (cutoff:3.500A) removed outlier: 5.385A pdb=" N GLN x 64 " --> pdb=" O ARG x 60 " (cutoff:3.500A) removed outlier: 5.610A pdb=" N LEU x 65 " --> pdb=" O GLU x 61 " (cutoff:3.500A) removed outlier: 4.477A pdb=" N LEU x 66 " --> pdb=" O GLU x 62 " (cutoff:3.500A) removed outlier: 4.459A pdb=" N GLN x 67 " --> pdb=" O LEU x 63 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N GLU x 68 " --> pdb=" O GLN x 64 " (cutoff:3.500A) removed outlier: 4.279A pdb=" N GLN x 69 " --> pdb=" O LEU x 65 " (cutoff:3.500A) removed outlier: 5.793A pdb=" N GLY x 70 " --> pdb=" O LEU x 66 " (cutoff:3.500A) Processing helix chain 'x' and resid 104 through 109 removed outlier: 4.587A pdb=" N VAL x 108 " --> pdb=" O ASP x 104 " (cutoff:3.500A) removed outlier: 5.293A pdb=" N THR x 109 " --> pdb=" O ILE x 105 " (cutoff:3.500A) No H-bonds generated for 'chain 'x' and resid 104 through 109' Processing helix chain 'x' and resid 132 through 142 removed outlier: 3.985A pdb=" N SER x 136 " --> pdb=" O ASP x 132 " (cutoff:3.500A) Processing helix chain 'x' and resid 154 through 171 removed outlier: 4.759A pdb=" N LEU x 167 " --> pdb=" O GLU x 163 " (cutoff:3.500A) Proline residue: x 168 - end of helix Processing helix chain 'x' and resid 172 through 179 Processing helix chain 'x' and resid 195 through 208 removed outlier: 4.467A pdb=" N LEU x 199 " --> pdb=" O GLY x 195 " (cutoff:3.500A) Processing helix chain 'x' and resid 217 through 224 Processing helix chain 'x' and resid 231 through 242 removed outlier: 4.060A pdb=" N PHE x 235 " --> pdb=" O VAL x 231 " (cutoff:3.500A) removed outlier: 3.614A pdb=" N VAL x 236 " --> pdb=" O ARG x 232 " (cutoff:3.500A) Processing helix chain 'x' and resid 267 through 282 removed outlier: 3.895A pdb=" N LEU x 276 " --> pdb=" O THR x 272 " (cutoff:3.500A) removed outlier: 5.450A pdb=" N GLY x 282 " --> pdb=" O ASN x 278 " (cutoff:3.500A) Processing helix chain 'x' and resid 297 through 302 removed outlier: 4.080A pdb=" N LEU x 301 " --> pdb=" O ARG x 297 " (cutoff:3.500A) removed outlier: 5.697A pdb=" N ASP x 302 " --> pdb=" O ILE x 298 " (cutoff:3.500A) No H-bonds generated for 'chain 'x' and resid 297 through 302' Processing helix chain 'x' and resid 322 through 337 removed outlier: 3.709A pdb=" N LYS x 335 " --> pdb=" O ILE x 331 " (cutoff:3.500A) removed outlier: 3.938A pdb=" N MET x 336 " --> pdb=" O HIS x 332 " (cutoff:3.500A) removed outlier: 5.045A pdb=" N ASN x 337 " --> pdb=" O SER x 333 " (cutoff:3.500A) Processing helix chain 'x' and resid 343 through 352 removed outlier: 3.652A pdb=" N ILE x 347 " --> pdb=" O ASN x 343 " (cutoff:3.500A) Proline residue: x 352 - end of helix Processing helix chain 'x' and resid 355 through 374 removed outlier: 3.828A pdb=" N VAL x 359 " --> pdb=" O SER x 355 " (cutoff:3.500A) removed outlier: 4.337A pdb=" N LYS x 360 " --> pdb=" O GLY x 356 " (cutoff:3.500A) Processing helix chain 'x' and resid 379 through 397 removed outlier: 4.098A pdb=" N PHE x 383 " --> pdb=" O THR x 379 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ALA x 388 " --> pdb=" O GLU x 384 " (cutoff:3.500A) removed outlier: 4.603A pdb=" N LYS x 397 " --> pdb=" O LYS x 393 " (cutoff:3.500A) Processing helix chain 'K' and resid 39 through 84 removed outlier: 4.776A pdb=" N LYS K 45 " --> pdb=" O TYR K 41 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N GLN K 48 " --> pdb=" O TYR K 44 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N GLN K 49 " --> pdb=" O LYS K 45 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N GLU K 50 " --> pdb=" O LYS K 46 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N TYR K 60 " --> pdb=" O VAL K 56 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N LYS K 62 " --> pdb=" O GLU K 58 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N ASP K 63 " --> pdb=" O GLU K 59 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LYS K 69 " --> pdb=" O GLN K 65 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N LYS K 70 " --> pdb=" O LYS K 66 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N HIS K 74 " --> pdb=" O LYS K 70 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLN K 76 " --> pdb=" O PHE K 72 " (cutoff:3.500A) removed outlier: 4.043A pdb=" N LYS K 80 " --> pdb=" O GLN K 76 " (cutoff:3.500A) removed outlier: 4.543A pdb=" N ARG K 81 " --> pdb=" O GLU K 77 " (cutoff:3.500A) removed outlier: 5.241A pdb=" N ILE K 82 " --> pdb=" O GLU K 78 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N GLN K 83 " --> pdb=" O VAL K 79 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N SER K 84 " --> pdb=" O LYS K 80 " (cutoff:3.500A) Processing helix chain 'K' and resid 163 through 168 removed outlier: 3.769A pdb=" N ILE K 167 " --> pdb=" O MET K 163 " (cutoff:3.500A) removed outlier: 4.547A pdb=" N GLY K 168 " --> pdb=" O TYR K 164 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 163 through 168' Processing helix chain 'K' and resid 171 through 181 Processing helix chain 'K' and resid 182 through 187 Processing helix chain 'K' and resid 188 through 194 Processing helix chain 'K' and resid 211 through 223 removed outlier: 3.859A pdb=" N LEU K 215 " --> pdb=" O GLY K 211 " (cutoff:3.500A) Processing helix chain 'K' and resid 231 through 236 removed outlier: 3.707A pdb=" N PHE K 235 " --> pdb=" O VAL K 231 " (cutoff:3.500A) removed outlier: 4.763A pdb=" N VAL K 236 " --> pdb=" O GLY K 232 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 231 through 236' Processing helix chain 'K' and resid 241 through 258 Processing helix chain 'K' and resid 266 through 271 removed outlier: 4.681A pdb=" N ILE K 270 " --> pdb=" O GLU K 266 " (cutoff:3.500A) Processing helix chain 'K' and resid 279 through 299 removed outlier: 6.605A pdb=" N ARG K 283 " --> pdb=" O THR K 279 " (cutoff:3.500A) removed outlier: 5.016A pdb=" N GLU K 284 " --> pdb=" O GLY K 280 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N VAL K 285 " --> pdb=" O ALA K 281 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N PHE K 299 " --> pdb=" O GLN K 295 " (cutoff:3.500A) Processing helix chain 'K' and resid 318 through 323 removed outlier: 3.934A pdb=" N LEU K 322 " --> pdb=" O ASP K 318 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N ARG K 323 " --> pdb=" O PRO K 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'K' and resid 318 through 323' Processing helix chain 'K' and resid 338 through 353 removed outlier: 3.805A pdb=" N LYS K 351 " --> pdb=" O THR K 347 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N MET K 352 " --> pdb=" O ILE K 348 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N ASN K 353 " --> pdb=" O THR K 349 " (cutoff:3.500A) Processing helix chain 'K' and resid 360 through 367 removed outlier: 3.696A pdb=" N ARG K 366 " --> pdb=" O ASP K 362 " (cutoff:3.500A) Proline residue: K 367 - end of helix Processing helix chain 'K' and resid 371 through 390 removed outlier: 4.073A pdb=" N ASN K 376 " --> pdb=" O GLY K 372 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N SER K 377 " --> pdb=" O ALA K 373 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N GLY K 383 " --> pdb=" O CYS K 379 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N GLU K 389 " --> pdb=" O LEU K 385 " (cutoff:3.500A) Processing helix chain 'K' and resid 395 through 407 Processing helix chain 'y' and resid 39 through 84 removed outlier: 4.776A pdb=" N LYS y 45 " --> pdb=" O TYR y 41 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N GLN y 48 " --> pdb=" O TYR y 44 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N GLN y 49 " --> pdb=" O LYS y 45 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N GLU y 50 " --> pdb=" O LYS y 46 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N TYR y 60 " --> pdb=" O VAL y 56 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N LYS y 62 " --> pdb=" O GLU y 58 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N ASP y 63 " --> pdb=" O GLU y 59 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N LYS y 69 " --> pdb=" O GLN y 65 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N LYS y 70 " --> pdb=" O LYS y 66 " (cutoff:3.500A) removed outlier: 3.581A pdb=" N HIS y 74 " --> pdb=" O LYS y 70 " (cutoff:3.500A) removed outlier: 3.730A pdb=" N GLN y 76 " --> pdb=" O PHE y 72 " (cutoff:3.500A) removed outlier: 4.043A pdb=" N LYS y 80 " --> pdb=" O GLN y 76 " (cutoff:3.500A) removed outlier: 4.543A pdb=" N ARG y 81 " --> pdb=" O GLU y 77 " (cutoff:3.500A) removed outlier: 5.241A pdb=" N ILE y 82 " --> pdb=" O GLU y 78 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N GLN y 83 " --> pdb=" O VAL y 79 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N SER y 84 " --> pdb=" O LYS y 80 " (cutoff:3.500A) Processing helix chain 'y' and resid 163 through 168 removed outlier: 3.769A pdb=" N ILE y 167 " --> pdb=" O MET y 163 " (cutoff:3.500A) removed outlier: 4.547A pdb=" N GLY y 168 " --> pdb=" O TYR y 164 " (cutoff:3.500A) No H-bonds generated for 'chain 'y' and resid 163 through 168' Processing helix chain 'y' and resid 171 through 181 Processing helix chain 'y' and resid 182 through 187 Processing helix chain 'y' and resid 188 through 194 Processing helix chain 'y' and resid 211 through 223 removed outlier: 3.859A pdb=" N LEU y 215 " --> pdb=" O GLY y 211 " (cutoff:3.500A) Processing helix chain 'y' and resid 231 through 236 removed outlier: 3.707A pdb=" N PHE y 235 " --> pdb=" O VAL y 231 " (cutoff:3.500A) removed outlier: 4.763A pdb=" N VAL y 236 " --> pdb=" O GLY y 232 " (cutoff:3.500A) No H-bonds generated for 'chain 'y' and resid 231 through 236' Processing helix chain 'y' and resid 241 through 258 Processing helix chain 'y' and resid 266 through 271 removed outlier: 4.681A pdb=" N ILE y 270 " --> pdb=" O GLU y 266 " (cutoff:3.500A) Processing helix chain 'y' and resid 279 through 299 removed outlier: 6.605A pdb=" N ARG y 283 " --> pdb=" O THR y 279 " (cutoff:3.500A) removed outlier: 5.016A pdb=" N GLU y 284 " --> pdb=" O GLY y 280 " (cutoff:3.500A) removed outlier: 3.638A pdb=" N VAL y 285 " --> pdb=" O ALA y 281 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N PHE y 299 " --> pdb=" O GLN y 295 " (cutoff:3.500A) Processing helix chain 'y' and resid 318 through 323 removed outlier: 3.934A pdb=" N LEU y 322 " --> pdb=" O ASP y 318 " (cutoff:3.500A) removed outlier: 3.881A pdb=" N ARG y 323 " --> pdb=" O PRO y 319 " (cutoff:3.500A) No H-bonds generated for 'chain 'y' and resid 318 through 323' Processing helix chain 'y' and resid 338 through 353 removed outlier: 3.805A pdb=" N LYS y 351 " --> pdb=" O THR y 347 " (cutoff:3.500A) removed outlier: 4.286A pdb=" N MET y 352 " --> pdb=" O ILE y 348 " (cutoff:3.500A) removed outlier: 4.765A pdb=" N ASN y 353 " --> pdb=" O THR y 349 " (cutoff:3.500A) Processing helix chain 'y' and resid 360 through 367 removed outlier: 3.696A pdb=" N ARG y 366 " --> pdb=" O ASP y 362 " (cutoff:3.500A) Proline residue: y 367 - end of helix Processing helix chain 'y' and resid 371 through 390 removed outlier: 4.073A pdb=" N ASN y 376 " --> pdb=" O GLY y 372 " (cutoff:3.500A) removed outlier: 3.541A pdb=" N SER y 377 " --> pdb=" O ALA y 373 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N GLY y 383 " --> pdb=" O CYS y 379 " (cutoff:3.500A) removed outlier: 3.626A pdb=" N GLU y 389 " --> pdb=" O LEU y 385 " (cutoff:3.500A) Processing helix chain 'y' and resid 395 through 407 Processing helix chain 'N' and resid 5 through 15 removed outlier: 4.304A pdb=" N ASP N 13 " --> pdb=" O ILE N 9 " (cutoff:3.500A) removed outlier: 5.129A pdb=" N ASP N 15 " --> pdb=" O LEU N 11 " (cutoff:3.500A) Processing helix chain 'N' and resid 16 through 31 Processing helix chain 'N' and resid 34 through 43 removed outlier: 4.440A pdb=" N GLU N 40 " --> pdb=" O ALA N 36 " (cutoff:3.500A) removed outlier: 4.452A pdb=" N SER N 41 " --> pdb=" O GLU N 37 " (cutoff:3.500A) removed outlier: 5.450A pdb=" N ASP N 43 " --> pdb=" O SER N 39 " (cutoff:3.500A) Processing helix chain 'N' and resid 44 through 52 removed outlier: 5.319A pdb=" N GLU N 52 " --> pdb=" O LEU N 48 " (cutoff:3.500A) Processing helix chain 'N' and resid 56 through 72 removed outlier: 4.079A pdb=" N ALA N 60 " --> pdb=" O SER N 56 " (cutoff:3.500A) Processing helix chain 'N' and resid 73 through 85 removed outlier: 3.905A pdb=" N SER N 77 " --> pdb=" O ALA N 73 " (cutoff:3.500A) Processing helix chain 'N' and resid 94 through 119 removed outlier: 3.750A pdb=" N HIS N 107 " --> pdb=" O LYS N 103 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N TYR N 108 " --> pdb=" O CYS N 104 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N THR N 109 " --> pdb=" O ILE N 105 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N LYS N 110 " --> pdb=" O ASP N 106 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N LEU N 118 " --> pdb=" O GLU N 114 " (cutoff:3.500A) Proline residue: N 119 - end of helix Processing helix chain 'N' and resid 127 through 145 Processing helix chain 'N' and resid 146 through 158 removed outlier: 3.781A pdb=" N ALA N 150 " --> pdb=" O LYS N 146 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ILE N 153 " --> pdb=" O GLN N 149 " (cutoff:3.500A) Processing helix chain 'N' and resid 159 through 171 removed outlier: 4.826A pdb=" N LYS N 165 " --> pdb=" O ASP N 161 " (cutoff:3.500A) removed outlier: 5.152A pdb=" N THR N 166 " --> pdb=" O VAL N 162 " (cutoff:3.500A) removed outlier: 7.478A pdb=" N ILE N 167 " --> pdb=" O PHE N 163 " (cutoff:3.500A) removed outlier: 6.288A pdb=" N LEU N 168 " --> pdb=" O GLU N 164 " (cutoff:3.500A) Processing helix chain 'N' and resid 175 through 187 removed outlier: 6.282A pdb=" N TYR N 179 " --> pdb=" O GLY N 175 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N SER N 180 " --> pdb=" O MET N 176 " (cutoff:3.500A) Processing helix chain 'N' and resid 190 through 209 removed outlier: 4.194A pdb=" N LEU N 208 " --> pdb=" O ILE N 204 " (cutoff:3.500A) removed outlier: 4.907A pdb=" N GLU N 209 " --> pdb=" O TYR N 205 " (cutoff:3.500A) Processing helix chain 'N' and resid 212 through 224 removed outlier: 3.552A pdb=" N VAL N 216 " --> pdb=" O ASP N 212 " (cutoff:3.500A) Processing helix chain 'N' and resid 225 through 240 Processing helix chain 'N' and resid 241 through 255 Processing helix chain 'N' and resid 257 through 272 removed outlier: 3.719A pdb=" N SER N 262 " --> pdb=" O GLN N 258 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N SER N 263 " --> pdb=" O GLN N 259 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N VAL N 264 " --> pdb=" O PHE N 260 " (cutoff:3.500A) Processing helix chain 'N' and resid 322 through 331 removed outlier: 3.625A pdb=" N ILE N 326 " --> pdb=" O THR N 322 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N GLY N 331 " --> pdb=" O LYS N 327 " (cutoff:3.500A) Processing helix chain 'N' and resid 332 through 345 Processing helix chain 'N' and resid 349 through 361 removed outlier: 3.578A pdb=" N LEU N 353 " --> pdb=" O ASP N 349 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N VAL N 360 " --> pdb=" O THR N 356 " (cutoff:3.500A) removed outlier: 5.188A pdb=" N ARG N 361 " --> pdb=" O LYS N 357 " (cutoff:3.500A) Processing helix chain 'N' and resid 363 through 378 removed outlier: 3.684A pdb=" N ILE N 371 " --> pdb=" O THR N 367 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N SER N 374 " --> pdb=" O VAL N 370 " (cutoff:3.500A) Processing helix chain 'N' and resid 383 through 390 removed outlier: 3.940A pdb=" N LEU N 390 " --> pdb=" O LEU N 386 " (cutoff:3.500A) Processing helix chain 'N' and resid 391 through 397 removed outlier: 4.822A pdb=" N THR N 397 " --> pdb=" O LEU N 393 " (cutoff:3.500A) Processing helix chain 'N' and resid 398 through 413 removed outlier: 3.993A pdb=" N LEU N 408 " --> pdb=" O ALA N 404 " (cutoff:3.500A) removed outlier: 4.671A pdb=" N GLY N 409 " --> pdb=" O THR N 405 " (cutoff:3.500A) removed outlier: 3.994A pdb=" N VAL N 410 " --> pdb=" O ALA N 406 " (cutoff:3.500A) removed outlier: 3.525A pdb=" N ILE N 411 " --> pdb=" O SER N 407 " (cutoff:3.500A) Processing helix chain 'N' and resid 416 through 425 removed outlier: 6.063A pdb=" N LEU N 420 " --> pdb=" O GLU N 416 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N GLN N 421 " --> pdb=" O LYS N 417 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N THR N 425 " --> pdb=" O GLN N 421 " (cutoff:3.500A) Processing helix chain 'N' and resid 435 through 451 removed outlier: 4.143A pdb=" N LEU N 443 " --> pdb=" O GLU N 439 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N TYR N 444 " --> pdb=" O GLY N 440 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N GLY N 447 " --> pdb=" O LEU N 443 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N LEU N 448 " --> pdb=" O TYR N 444 " (cutoff:3.500A) removed outlier: 4.316A pdb=" N ILE N 449 " --> pdb=" O ALA N 445 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N HIS N 450 " --> pdb=" O LEU N 446 " (cutoff:3.500A) Processing helix chain 'N' and resid 454 through 469 Processing helix chain 'N' and resid 471 through 486 removed outlier: 4.533A pdb=" N GLY N 477 " --> pdb=" O VAL N 473 " (cutoff:3.500A) removed outlier: 4.562A pdb=" N GLY N 482 " --> pdb=" O SER N 478 " (cutoff:3.500A) Processing helix chain 'N' and resid 490 through 504 removed outlier: 3.707A pdb=" N ASP N 504 " --> pdb=" O ASN N 500 " (cutoff:3.500A) Processing helix chain 'N' and resid 506 through 521 removed outlier: 3.907A pdb=" N GLU N 510 " --> pdb=" O ALA N 506 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N ALA N 511 " --> pdb=" O VAL N 507 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ALA N 512 " --> pdb=" O THR N 508 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLY N 517 " --> pdb=" O GLY N 513 " (cutoff:3.500A) Processing helix chain 'N' and resid 525 through 539 Processing helix chain 'N' and resid 541 through 557 removed outlier: 3.682A pdb=" N LEU N 545 " --> pdb=" O HIS N 541 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N LEU N 548 " --> pdb=" O ILE N 544 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ALA N 549 " --> pdb=" O LEU N 545 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N VAL N 550 " --> pdb=" O ARG N 546 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N TYR N 557 " --> pdb=" O ALA N 553 " (cutoff:3.500A) Processing helix chain 'N' and resid 559 through 573 removed outlier: 4.801A pdb=" N ALA N 563 " --> pdb=" O ARG N 559 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ASP N 564 " --> pdb=" O MET N 560 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N ALA N 565 " --> pdb=" O GLU N 561 " (cutoff:3.500A) removed outlier: 5.172A pdb=" N LEU N 566 " --> pdb=" O GLU N 562 " (cutoff:3.500A) Processing helix chain 'N' and resid 575 through 591 removed outlier: 3.577A pdb=" N ARG N 579 " --> pdb=" O ASP N 575 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N TYR N 584 " --> pdb=" O ARG N 580 " (cutoff:3.500A) Processing helix chain 'N' and resid 595 through 609 Processing helix chain 'N' and resid 611 through 627 removed outlier: 3.998A pdb=" N GLY N 623 " --> pdb=" O VAL N 619 " (cutoff:3.500A) removed outlier: 4.272A pdb=" N PHE N 624 " --> pdb=" O GLU N 620 " (cutoff:3.500A) Processing helix chain 'N' and resid 629 through 641 removed outlier: 4.585A pdb=" N CYS N 633 " --> pdb=" O THR N 629 " (cutoff:3.500A) Proline residue: N 634 - end of helix removed outlier: 3.969A pdb=" N LEU N 639 " --> pdb=" O SER N 635 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N LEU N 640 " --> pdb=" O VAL N 636 " (cutoff:3.500A) Processing helix chain 'N' and resid 645 through 663 removed outlier: 3.811A pdb=" N ALA N 653 " --> pdb=" O ARG N 649 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N MET N 654 " --> pdb=" O TYR N 650 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N ALA N 655 " --> pdb=" O GLY N 651 " (cutoff:3.500A) removed outlier: 4.484A pdb=" N GLY N 662 " --> pdb=" O ILE N 658 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N THR N 663 " --> pdb=" O CYS N 659 " (cutoff:3.500A) Processing helix chain 'N' and resid 665 through 677 removed outlier: 3.738A pdb=" N LEU N 672 " --> pdb=" O ALA N 668 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N GLU N 673 " --> pdb=" O ILE N 669 " (cutoff:3.500A) Proline residue: N 674 - end of helix Processing helix chain 'N' and resid 680 through 696 Processing helix chain 'N' and resid 703 through 720 removed outlier: 4.982A pdb=" N ASN N 707 " --> pdb=" O CYS N 703 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N GLN N 708 " --> pdb=" O PRO N 704 " (cutoff:3.500A) removed outlier: 4.742A pdb=" N LYS N 720 " --> pdb=" O VAL N 716 " (cutoff:3.500A) Processing helix chain 'N' and resid 723 through 739 removed outlier: 3.730A pdb=" N PHE N 728 " --> pdb=" O VAL N 724 " (cutoff:3.500A) Processing helix chain 'N' and resid 756 through 769 removed outlier: 3.609A pdb=" N VAL N 760 " --> pdb=" O HIS N 756 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N GLY N 762 " --> pdb=" O PRO N 758 " (cutoff:3.500A) removed outlier: 4.462A pdb=" N VAL N 763 " --> pdb=" O SER N 759 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N GLN N 768 " --> pdb=" O LEU N 764 " (cutoff:3.500A) removed outlier: 5.170A pdb=" N PHE N 769 " --> pdb=" O VAL N 765 " (cutoff:3.500A) Processing helix chain 'N' and resid 775 through 781 removed outlier: 4.987A pdb=" N LEU N 779 " --> pdb=" O LEU N 775 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N SER N 780 " --> pdb=" O SER N 776 " (cutoff:3.500A) removed outlier: 4.922A pdb=" N LEU N 781 " --> pdb=" O HIS N 777 " (cutoff:3.500A) No H-bonds generated for 'chain 'N' and resid 775 through 781' Processing helix chain 'N' and resid 808 through 813 removed outlier: 3.843A pdb=" N ALA N 812 " --> pdb=" O PRO N 808 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N TYR N 813 " --> pdb=" O SER N 809 " (cutoff:3.500A) No H-bonds generated for 'chain 'N' and resid 808 through 813' Processing helix chain 'N' and resid 885 through 893 removed outlier: 3.571A pdb=" N LYS N 890 " --> pdb=" O PRO N 886 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N LEU N 892 " --> pdb=" O GLN N 888 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N THR N 893 " --> pdb=" O LEU N 889 " (cutoff:3.500A) Processing helix chain 'N' and resid 933 through 939 Processing helix chain '1' and resid 5 through 15 removed outlier: 4.304A pdb=" N ASP 1 13 " --> pdb=" O ILE 1 9 " (cutoff:3.500A) removed outlier: 5.129A pdb=" N ASP 1 15 " --> pdb=" O LEU 1 11 " (cutoff:3.500A) Processing helix chain '1' and resid 16 through 31 Processing helix chain '1' and resid 34 through 43 removed outlier: 4.440A pdb=" N GLU 1 40 " --> pdb=" O ALA 1 36 " (cutoff:3.500A) removed outlier: 4.452A pdb=" N SER 1 41 " --> pdb=" O GLU 1 37 " (cutoff:3.500A) removed outlier: 5.450A pdb=" N ASP 1 43 " --> pdb=" O SER 1 39 " (cutoff:3.500A) Processing helix chain '1' and resid 44 through 52 removed outlier: 5.319A pdb=" N GLU 1 52 " --> pdb=" O LEU 1 48 " (cutoff:3.500A) Processing helix chain '1' and resid 56 through 72 removed outlier: 4.079A pdb=" N ALA 1 60 " --> pdb=" O SER 1 56 " (cutoff:3.500A) Processing helix chain '1' and resid 73 through 85 removed outlier: 3.905A pdb=" N SER 1 77 " --> pdb=" O ALA 1 73 " (cutoff:3.500A) Processing helix chain '1' and resid 94 through 119 removed outlier: 3.750A pdb=" N HIS 1 107 " --> pdb=" O LYS 1 103 " (cutoff:3.500A) removed outlier: 3.751A pdb=" N TYR 1 108 " --> pdb=" O CYS 1 104 " (cutoff:3.500A) removed outlier: 3.695A pdb=" N THR 1 109 " --> pdb=" O ILE 1 105 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N LYS 1 110 " --> pdb=" O ASP 1 106 " (cutoff:3.500A) removed outlier: 3.616A pdb=" N LEU 1 118 " --> pdb=" O GLU 1 114 " (cutoff:3.500A) Proline residue: 1 119 - end of helix Processing helix chain '1' and resid 127 through 145 Processing helix chain '1' and resid 146 through 158 removed outlier: 3.781A pdb=" N ALA 1 150 " --> pdb=" O LYS 1 146 " (cutoff:3.500A) removed outlier: 3.700A pdb=" N ILE 1 153 " --> pdb=" O GLN 1 149 " (cutoff:3.500A) Processing helix chain '1' and resid 159 through 171 removed outlier: 4.826A pdb=" N LYS 1 165 " --> pdb=" O ASP 1 161 " (cutoff:3.500A) removed outlier: 5.152A pdb=" N THR 1 166 " --> pdb=" O VAL 1 162 " (cutoff:3.500A) removed outlier: 7.478A pdb=" N ILE 1 167 " --> pdb=" O PHE 1 163 " (cutoff:3.500A) removed outlier: 6.288A pdb=" N LEU 1 168 " --> pdb=" O GLU 1 164 " (cutoff:3.500A) Processing helix chain '1' and resid 175 through 187 removed outlier: 6.282A pdb=" N TYR 1 179 " --> pdb=" O GLY 1 175 " (cutoff:3.500A) removed outlier: 5.086A pdb=" N SER 1 180 " --> pdb=" O MET 1 176 " (cutoff:3.500A) Processing helix chain '1' and resid 190 through 209 removed outlier: 4.194A pdb=" N LEU 1 208 " --> pdb=" O ILE 1 204 " (cutoff:3.500A) removed outlier: 4.907A pdb=" N GLU 1 209 " --> pdb=" O TYR 1 205 " (cutoff:3.500A) Processing helix chain '1' and resid 212 through 224 removed outlier: 3.552A pdb=" N VAL 1 216 " --> pdb=" O ASP 1 212 " (cutoff:3.500A) Processing helix chain '1' and resid 225 through 240 Processing helix chain '1' and resid 241 through 255 Processing helix chain '1' and resid 257 through 272 removed outlier: 3.719A pdb=" N SER 1 262 " --> pdb=" O GLN 1 258 " (cutoff:3.500A) removed outlier: 3.945A pdb=" N SER 1 263 " --> pdb=" O GLN 1 259 " (cutoff:3.500A) removed outlier: 3.756A pdb=" N VAL 1 264 " --> pdb=" O PHE 1 260 " (cutoff:3.500A) Processing helix chain '1' and resid 322 through 331 removed outlier: 3.625A pdb=" N ILE 1 326 " --> pdb=" O THR 1 322 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N GLY 1 331 " --> pdb=" O LYS 1 327 " (cutoff:3.500A) Processing helix chain '1' and resid 332 through 345 Processing helix chain '1' and resid 349 through 361 removed outlier: 3.578A pdb=" N LEU 1 353 " --> pdb=" O ASP 1 349 " (cutoff:3.500A) removed outlier: 4.052A pdb=" N VAL 1 360 " --> pdb=" O THR 1 356 " (cutoff:3.500A) removed outlier: 5.188A pdb=" N ARG 1 361 " --> pdb=" O LYS 1 357 " (cutoff:3.500A) Processing helix chain '1' and resid 363 through 378 removed outlier: 3.684A pdb=" N ILE 1 371 " --> pdb=" O THR 1 367 " (cutoff:3.500A) removed outlier: 4.051A pdb=" N SER 1 374 " --> pdb=" O VAL 1 370 " (cutoff:3.500A) Processing helix chain '1' and resid 383 through 390 removed outlier: 3.940A pdb=" N LEU 1 390 " --> pdb=" O LEU 1 386 " (cutoff:3.500A) Processing helix chain '1' and resid 391 through 397 removed outlier: 4.822A pdb=" N THR 1 397 " --> pdb=" O LEU 1 393 " (cutoff:3.500A) Processing helix chain '1' and resid 398 through 413 removed outlier: 3.989A pdb=" N LEU 1 408 " --> pdb=" O ALA 1 404 " (cutoff:3.500A) removed outlier: 4.694A pdb=" N GLY 1 409 " --> pdb=" O THR 1 405 " (cutoff:3.500A) removed outlier: 3.986A pdb=" N VAL 1 410 " --> pdb=" O ALA 1 406 " (cutoff:3.500A) Processing helix chain '1' and resid 416 through 425 removed outlier: 6.063A pdb=" N LEU 1 420 " --> pdb=" O GLU 1 416 " (cutoff:3.500A) removed outlier: 3.701A pdb=" N GLN 1 421 " --> pdb=" O LYS 1 417 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N THR 1 425 " --> pdb=" O GLN 1 421 " (cutoff:3.500A) Processing helix chain '1' and resid 435 through 451 removed outlier: 4.143A pdb=" N LEU 1 443 " --> pdb=" O GLU 1 439 " (cutoff:3.500A) removed outlier: 3.625A pdb=" N TYR 1 444 " --> pdb=" O GLY 1 440 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N GLY 1 447 " --> pdb=" O LEU 1 443 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N LEU 1 448 " --> pdb=" O TYR 1 444 " (cutoff:3.500A) removed outlier: 4.316A pdb=" N ILE 1 449 " --> pdb=" O ALA 1 445 " (cutoff:3.500A) removed outlier: 3.591A pdb=" N HIS 1 450 " --> pdb=" O LEU 1 446 " (cutoff:3.500A) Processing helix chain '1' and resid 454 through 469 Processing helix chain '1' and resid 471 through 486 removed outlier: 4.533A pdb=" N GLY 1 477 " --> pdb=" O VAL 1 473 " (cutoff:3.500A) removed outlier: 4.562A pdb=" N GLY 1 482 " --> pdb=" O SER 1 478 " (cutoff:3.500A) Processing helix chain '1' and resid 490 through 504 removed outlier: 3.707A pdb=" N ASP 1 504 " --> pdb=" O ASN 1 500 " (cutoff:3.500A) Processing helix chain '1' and resid 506 through 521 removed outlier: 3.907A pdb=" N GLU 1 510 " --> pdb=" O ALA 1 506 " (cutoff:3.500A) removed outlier: 4.402A pdb=" N ALA 1 511 " --> pdb=" O VAL 1 507 " (cutoff:3.500A) removed outlier: 3.713A pdb=" N ALA 1 512 " --> pdb=" O THR 1 508 " (cutoff:3.500A) removed outlier: 4.305A pdb=" N GLY 1 517 " --> pdb=" O GLY 1 513 " (cutoff:3.500A) Processing helix chain '1' and resid 525 through 539 Processing helix chain '1' and resid 541 through 557 removed outlier: 3.682A pdb=" N LEU 1 545 " --> pdb=" O HIS 1 541 " (cutoff:3.500A) removed outlier: 3.742A pdb=" N LEU 1 548 " --> pdb=" O ILE 1 544 " (cutoff:3.500A) removed outlier: 4.185A pdb=" N ALA 1 549 " --> pdb=" O LEU 1 545 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N VAL 1 550 " --> pdb=" O ARG 1 546 " (cutoff:3.500A) removed outlier: 4.350A pdb=" N TYR 1 557 " --> pdb=" O ALA 1 553 " (cutoff:3.500A) Processing helix chain '1' and resid 559 through 573 removed outlier: 4.801A pdb=" N ALA 1 563 " --> pdb=" O ARG 1 559 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ASP 1 564 " --> pdb=" O MET 1 560 " (cutoff:3.500A) removed outlier: 4.891A pdb=" N ALA 1 565 " --> pdb=" O GLU 1 561 " (cutoff:3.500A) removed outlier: 5.172A pdb=" N LEU 1 566 " --> pdb=" O GLU 1 562 " (cutoff:3.500A) Processing helix chain '1' and resid 575 through 591 removed outlier: 3.577A pdb=" N ARG 1 579 " --> pdb=" O ASP 1 575 " (cutoff:3.500A) removed outlier: 3.789A pdb=" N TYR 1 584 " --> pdb=" O ARG 1 580 " (cutoff:3.500A) Processing helix chain '1' and resid 595 through 609 Processing helix chain '1' and resid 611 through 627 removed outlier: 3.998A pdb=" N GLY 1 623 " --> pdb=" O VAL 1 619 " (cutoff:3.500A) removed outlier: 4.272A pdb=" N PHE 1 624 " --> pdb=" O GLU 1 620 " (cutoff:3.500A) Processing helix chain '1' and resid 629 through 641 removed outlier: 4.585A pdb=" N CYS 1 633 " --> pdb=" O THR 1 629 " (cutoff:3.500A) Proline residue: 1 634 - end of helix removed outlier: 3.969A pdb=" N LEU 1 639 " --> pdb=" O SER 1 635 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N LEU 1 640 " --> pdb=" O VAL 1 636 " (cutoff:3.500A) Processing helix chain '1' and resid 645 through 663 removed outlier: 3.811A pdb=" N ALA 1 653 " --> pdb=" O ARG 1 649 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N MET 1 654 " --> pdb=" O TYR 1 650 " (cutoff:3.500A) removed outlier: 3.703A pdb=" N ALA 1 655 " --> pdb=" O GLY 1 651 " (cutoff:3.500A) removed outlier: 4.484A pdb=" N GLY 1 662 " --> pdb=" O ILE 1 658 " (cutoff:3.500A) removed outlier: 4.911A pdb=" N THR 1 663 " --> pdb=" O CYS 1 659 " (cutoff:3.500A) Processing helix chain '1' and resid 665 through 677 removed outlier: 3.738A pdb=" N LEU 1 672 " --> pdb=" O ALA 1 668 " (cutoff:3.500A) removed outlier: 3.514A pdb=" N GLU 1 673 " --> pdb=" O ILE 1 669 " (cutoff:3.500A) Proline residue: 1 674 - end of helix Processing helix chain '1' and resid 680 through 696 Processing helix chain '1' and resid 703 through 720 removed outlier: 4.982A pdb=" N ASN 1 707 " --> pdb=" O CYS 1 703 " (cutoff:3.500A) removed outlier: 4.497A pdb=" N GLN 1 708 " --> pdb=" O PRO 1 704 " (cutoff:3.500A) removed outlier: 4.742A pdb=" N LYS 1 720 " --> pdb=" O VAL 1 716 " (cutoff:3.500A) Processing helix chain '1' and resid 723 through 739 removed outlier: 3.730A pdb=" N PHE 1 728 " --> pdb=" O VAL 1 724 " (cutoff:3.500A) Processing helix chain '1' and resid 756 through 769 removed outlier: 3.609A pdb=" N VAL 1 760 " --> pdb=" O HIS 1 756 " (cutoff:3.500A) removed outlier: 3.968A pdb=" N GLY 1 762 " --> pdb=" O PRO 1 758 " (cutoff:3.500A) removed outlier: 4.462A pdb=" N VAL 1 763 " --> pdb=" O SER 1 759 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N GLN 1 768 " --> pdb=" O LEU 1 764 " (cutoff:3.500A) removed outlier: 5.170A pdb=" N PHE 1 769 " --> pdb=" O VAL 1 765 " (cutoff:3.500A) Processing helix chain '1' and resid 775 through 781 removed outlier: 4.987A pdb=" N LEU 1 779 " --> pdb=" O LEU 1 775 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N SER 1 780 " --> pdb=" O SER 1 776 " (cutoff:3.500A) removed outlier: 4.922A pdb=" N LEU 1 781 " --> pdb=" O HIS 1 777 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 775 through 781' Processing helix chain '1' and resid 808 through 813 removed outlier: 3.843A pdb=" N ALA 1 812 " --> pdb=" O PRO 1 808 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N TYR 1 813 " --> pdb=" O SER 1 809 " (cutoff:3.500A) No H-bonds generated for 'chain '1' and resid 808 through 813' Processing helix chain '1' and resid 885 through 893 removed outlier: 3.571A pdb=" N LYS 1 890 " --> pdb=" O PRO 1 886 " (cutoff:3.500A) removed outlier: 4.125A pdb=" N LEU 1 892 " --> pdb=" O GLN 1 888 " (cutoff:3.500A) removed outlier: 4.957A pdb=" N THR 1 893 " --> pdb=" O LEU 1 889 " (cutoff:3.500A) Processing helix chain '1' and resid 933 through 939 Processing helix chain 'O' and resid 3 through 13 Processing helix chain 'O' and resid 15 through 32 Proline residue: O 19 - end of helix removed outlier: 4.646A pdb=" N TRP O 22 " --> pdb=" O GLN O 18 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N HIS O 23 " --> pdb=" O PRO O 19 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N ARG O 24 " --> pdb=" O ALA O 20 " (cutoff:3.500A) Processing helix chain 'O' and resid 33 through 50 Proline residue: O 48 - end of helix Processing helix chain 'O' and resid 57 through 63 removed outlier: 3.612A pdb=" N PHE O 63 " --> pdb=" O LEU O 59 " (cutoff:3.500A) Processing helix chain 'O' and resid 72 through 88 removed outlier: 3.515A pdb=" N ILE O 79 " --> pdb=" O SER O 75 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N ILE O 80 " --> pdb=" O LEU O 76 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N GLN O 86 " --> pdb=" O HIS O 82 " (cutoff:3.500A) removed outlier: 4.483A pdb=" N MET O 87 " --> pdb=" O VAL O 83 " (cutoff:3.500A) removed outlier: 5.476A pdb=" N THR O 88 " --> pdb=" O VAL O 84 " (cutoff:3.500A) Processing helix chain 'O' and resid 89 through 105 removed outlier: 4.678A pdb=" N VAL O 104 " --> pdb=" O THR O 100 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS O 105 " --> pdb=" O ARG O 101 " (cutoff:3.500A) Processing helix chain 'O' and resid 107 through 126 removed outlier: 5.456A pdb=" N VAL O 111 " --> pdb=" O SER O 107 " (cutoff:3.500A) Processing helix chain 'O' and resid 127 through 146 removed outlier: 3.600A pdb=" N THR O 131 " --> pdb=" O ASP O 127 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N GLU O 140 " --> pdb=" O GLU O 136 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N MET O 141 " --> pdb=" O ASP O 137 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N LEU O 145 " --> pdb=" O MET O 141 " (cutoff:3.500A) Proline residue: O 146 - end of helix Processing helix chain 'O' and resid 149 through 167 removed outlier: 4.467A pdb=" N SER O 153 " --> pdb=" O THR O 149 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N LYS O 161 " --> pdb=" O ASP O 157 " (cutoff:3.500A) Processing helix chain 'O' and resid 168 through 183 Processing helix chain 'O' and resid 189 through 207 Processing helix chain 'O' and resid 213 through 219 Processing helix chain 'O' and resid 220 through 227 removed outlier: 4.716A pdb=" N SER O 224 " --> pdb=" O PRO O 220 " (cutoff:3.500A) removed outlier: 4.273A pdb=" N LEU O 225 " --> pdb=" O VAL O 221 " (cutoff:3.500A) removed outlier: 5.876A pdb=" N ASN O 227 " --> pdb=" O GLU O 223 " (cutoff:3.500A) Processing helix chain 'O' and resid 230 through 243 Processing helix chain 'O' and resid 244 through 259 removed outlier: 3.697A pdb=" N THR O 253 " --> pdb=" O GLN O 249 " (cutoff:3.500A) removed outlier: 4.348A pdb=" N ALA O 254 " --> pdb=" O THR O 250 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N TRP O 255 " --> pdb=" O LEU O 251 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N GLN O 257 " --> pdb=" O THR O 253 " (cutoff:3.500A) removed outlier: 4.928A pdb=" N GLN O 258 " --> pdb=" O ALA O 254 " (cutoff:3.500A) Proline residue: O 259 - end of helix Processing helix chain 'O' and resid 260 through 285 removed outlier: 4.251A pdb=" N ASN O 264 " --> pdb=" O ASP O 260 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N GLU O 265 " --> pdb=" O LEU O 261 " (cutoff:3.500A) removed outlier: 6.373A pdb=" N ALA O 266 " --> pdb=" O ALA O 262 " (cutoff:3.500A) removed outlier: 7.254A pdb=" N GLN O 267 " --> pdb=" O ALA O 263 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N LEU O 268 " --> pdb=" O ASN O 264 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N ARG O 284 " --> pdb=" O MET O 280 " (cutoff:3.500A) Proline residue: O 285 - end of helix Processing helix chain 'O' and resid 292 through 301 removed outlier: 3.644A pdb=" N ILE O 296 " --> pdb=" O THR O 292 " (cutoff:3.500A) Processing helix chain 'O' and resid 304 through 318 removed outlier: 7.084A pdb=" N GLU O 308 " --> pdb=" O VAL O 304 " (cutoff:3.500A) removed outlier: 4.265A pdb=" N LEU O 309 " --> pdb=" O ASN O 305 " (cutoff:3.500A) removed outlier: 3.996A pdb=" N GLY O 318 " --> pdb=" O ALA O 314 " (cutoff:3.500A) Processing helix chain 'O' and resid 342 through 372 removed outlier: 3.658A pdb=" N ILE O 346 " --> pdb=" O ASP O 342 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N LYS O 347 " --> pdb=" O LEU O 343 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N GLY O 348 " --> pdb=" O GLN O 344 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N MET O 349 " --> pdb=" O GLN O 345 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N VAL O 360 " --> pdb=" O TRP O 356 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N GLU O 368 " --> pdb=" O GLU O 364 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N HIS O 369 " --> pdb=" O MET O 365 " (cutoff:3.500A) removed outlier: 5.290A pdb=" N GLN O 370 " --> pdb=" O LEU O 366 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N ALA O 371 " --> pdb=" O VAL O 367 " (cutoff:3.500A) Processing helix chain 'O' and resid 65 through 70 removed outlier: 3.563A pdb=" N GLU O 68 " --> pdb=" O SER O 65 " (cutoff:3.500A) removed outlier: 4.381A pdb=" N HIS O 69 " --> pdb=" O GLU O 66 " (cutoff:3.500A) Processing helix chain '2' and resid 3 through 13 Processing helix chain '2' and resid 15 through 32 Proline residue: 2 19 - end of helix removed outlier: 4.646A pdb=" N TRP 2 22 " --> pdb=" O GLN 2 18 " (cutoff:3.500A) removed outlier: 3.903A pdb=" N HIS 2 23 " --> pdb=" O PRO 2 19 " (cutoff:3.500A) removed outlier: 3.832A pdb=" N ARG 2 24 " --> pdb=" O ALA 2 20 " (cutoff:3.500A) Processing helix chain '2' and resid 33 through 50 Proline residue: 2 48 - end of helix Processing helix chain '2' and resid 57 through 63 removed outlier: 3.612A pdb=" N PHE 2 63 " --> pdb=" O LEU 2 59 " (cutoff:3.500A) Processing helix chain '2' and resid 72 through 88 removed outlier: 3.515A pdb=" N ILE 2 79 " --> pdb=" O SER 2 75 " (cutoff:3.500A) removed outlier: 3.612A pdb=" N ILE 2 80 " --> pdb=" O LEU 2 76 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N GLN 2 86 " --> pdb=" O HIS 2 82 " (cutoff:3.500A) removed outlier: 4.483A pdb=" N MET 2 87 " --> pdb=" O VAL 2 83 " (cutoff:3.500A) removed outlier: 5.476A pdb=" N THR 2 88 " --> pdb=" O VAL 2 84 " (cutoff:3.500A) Processing helix chain '2' and resid 89 through 105 removed outlier: 4.678A pdb=" N VAL 2 104 " --> pdb=" O THR 2 100 " (cutoff:3.500A) removed outlier: 4.222A pdb=" N LYS 2 105 " --> pdb=" O ARG 2 101 " (cutoff:3.500A) Processing helix chain '2' and resid 107 through 126 removed outlier: 5.456A pdb=" N VAL 2 111 " --> pdb=" O SER 2 107 " (cutoff:3.500A) Processing helix chain '2' and resid 127 through 146 removed outlier: 3.600A pdb=" N THR 2 131 " --> pdb=" O ASP 2 127 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N GLU 2 140 " --> pdb=" O GLU 2 136 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N MET 2 141 " --> pdb=" O ASP 2 137 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N LEU 2 145 " --> pdb=" O MET 2 141 " (cutoff:3.500A) Proline residue: 2 146 - end of helix Processing helix chain '2' and resid 149 through 167 removed outlier: 4.467A pdb=" N SER 2 153 " --> pdb=" O THR 2 149 " (cutoff:3.500A) removed outlier: 3.561A pdb=" N LYS 2 161 " --> pdb=" O ASP 2 157 " (cutoff:3.500A) Processing helix chain '2' and resid 168 through 183 Processing helix chain '2' and resid 189 through 207 Processing helix chain '2' and resid 213 through 219 Processing helix chain '2' and resid 220 through 227 removed outlier: 4.716A pdb=" N SER 2 224 " --> pdb=" O PRO 2 220 " (cutoff:3.500A) removed outlier: 4.273A pdb=" N LEU 2 225 " --> pdb=" O VAL 2 221 " (cutoff:3.500A) removed outlier: 5.876A pdb=" N ASN 2 227 " --> pdb=" O GLU 2 223 " (cutoff:3.500A) Processing helix chain '2' and resid 230 through 243 Processing helix chain '2' and resid 244 through 259 removed outlier: 3.697A pdb=" N THR 2 253 " --> pdb=" O GLN 2 249 " (cutoff:3.500A) removed outlier: 4.348A pdb=" N ALA 2 254 " --> pdb=" O THR 2 250 " (cutoff:3.500A) removed outlier: 4.370A pdb=" N TRP 2 255 " --> pdb=" O LEU 2 251 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N GLN 2 257 " --> pdb=" O THR 2 253 " (cutoff:3.500A) removed outlier: 4.928A pdb=" N GLN 2 258 " --> pdb=" O ALA 2 254 " (cutoff:3.500A) Proline residue: 2 259 - end of helix Processing helix chain '2' and resid 260 through 285 removed outlier: 4.251A pdb=" N ASN 2 264 " --> pdb=" O ASP 2 260 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N GLU 2 265 " --> pdb=" O LEU 2 261 " (cutoff:3.500A) removed outlier: 6.373A pdb=" N ALA 2 266 " --> pdb=" O ALA 2 262 " (cutoff:3.500A) removed outlier: 7.254A pdb=" N GLN 2 267 " --> pdb=" O ALA 2 263 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N LEU 2 268 " --> pdb=" O ASN 2 264 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N ARG 2 284 " --> pdb=" O MET 2 280 " (cutoff:3.500A) Proline residue: 2 285 - end of helix Processing helix chain '2' and resid 292 through 301 removed outlier: 3.644A pdb=" N ILE 2 296 " --> pdb=" O THR 2 292 " (cutoff:3.500A) Processing helix chain '2' and resid 304 through 318 removed outlier: 7.084A pdb=" N GLU 2 308 " --> pdb=" O VAL 2 304 " (cutoff:3.500A) removed outlier: 4.265A pdb=" N LEU 2 309 " --> pdb=" O ASN 2 305 " (cutoff:3.500A) removed outlier: 3.996A pdb=" N GLY 2 318 " --> pdb=" O ALA 2 314 " (cutoff:3.500A) Processing helix chain '2' and resid 342 through 372 removed outlier: 3.658A pdb=" N ILE 2 346 " --> pdb=" O ASP 2 342 " (cutoff:3.500A) removed outlier: 3.654A pdb=" N LYS 2 347 " --> pdb=" O LEU 2 343 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N GLY 2 348 " --> pdb=" O GLN 2 344 " (cutoff:3.500A) removed outlier: 3.765A pdb=" N MET 2 349 " --> pdb=" O GLN 2 345 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N VAL 2 360 " --> pdb=" O TRP 2 356 " (cutoff:3.500A) removed outlier: 3.898A pdb=" N GLU 2 368 " --> pdb=" O GLU 2 364 " (cutoff:3.500A) removed outlier: 4.946A pdb=" N HIS 2 369 " --> pdb=" O MET 2 365 " (cutoff:3.500A) removed outlier: 5.290A pdb=" N GLN 2 370 " --> pdb=" O LEU 2 366 " (cutoff:3.500A) removed outlier: 4.719A pdb=" N ALA 2 371 " --> pdb=" O VAL 2 367 " (cutoff:3.500A) Processing helix chain '2' and resid 65 through 70 removed outlier: 3.563A pdb=" N GLU 2 68 " --> pdb=" O SER 2 65 " (cutoff:3.500A) removed outlier: 4.381A pdb=" N HIS 2 69 " --> pdb=" O GLU 2 66 " (cutoff:3.500A) Processing helix chain 'P' and resid 5 through 24 removed outlier: 3.681A pdb=" N ARG P 12 " --> pdb=" O ARG P 8 " (cutoff:3.500A) Processing helix chain 'P' and resid 41 through 55 removed outlier: 4.886A pdb=" N GLU P 45 " --> pdb=" O GLN P 41 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N THR P 46 " --> pdb=" O GLU P 42 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N LEU P 47 " --> pdb=" O VAL P 43 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N LEU P 50 " --> pdb=" O THR P 46 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N THR P 54 " --> pdb=" O LEU P 50 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N ARG P 55 " --> pdb=" O GLU P 51 " (cutoff:3.500A) Processing helix chain 'P' and resid 56 through 78 removed outlier: 3.501A pdb=" N VAL P 61 " --> pdb=" O ALA P 57 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N VAL P 71 " --> pdb=" O LEU P 67 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ALA P 77 " --> pdb=" O MET P 73 " (cutoff:3.500A) Processing helix chain 'P' and resid 79 through 94 removed outlier: 5.294A pdb=" N LEU P 83 " --> pdb=" O GLU P 79 " (cutoff:3.500A) removed outlier: 4.301A pdb=" N GLU P 85 " --> pdb=" O ASP P 81 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ARG P 94 " --> pdb=" O LEU P 90 " (cutoff:3.500A) Processing helix chain 'P' and resid 99 through 112 removed outlier: 3.935A pdb=" N VAL P 105 " --> pdb=" O VAL P 101 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N GLN P 106 " --> pdb=" O ALA P 102 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N THR P 110 " --> pdb=" O GLN P 106 " (cutoff:3.500A) removed outlier: 4.780A pdb=" N VAL P 112 " --> pdb=" O CYS P 108 " (cutoff:3.500A) Processing helix chain 'P' and resid 117 through 132 removed outlier: 3.896A pdb=" N LEU P 122 " --> pdb=" O LEU P 118 " (cutoff:3.500A) Processing helix chain 'P' and resid 139 through 155 removed outlier: 4.111A pdb=" N ALA P 143 " --> pdb=" O GLU P 139 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N ARG P 144 " --> pdb=" O ILE P 140 " (cutoff:3.500A) removed outlier: 3.777A pdb=" N THR P 148 " --> pdb=" O ARG P 144 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N GLU P 154 " --> pdb=" O ALA P 150 " (cutoff:3.500A) Processing helix chain 'P' and resid 160 through 174 removed outlier: 4.305A pdb=" N ILE P 165 " --> pdb=" O GLU P 161 " (cutoff:3.500A) removed outlier: 4.054A pdb=" N LEU P 166 " --> pdb=" O ALA P 162 " (cutoff:3.500A) removed outlier: 4.458A pdb=" N GLU P 168 " --> pdb=" O SER P 164 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N LEU P 169 " --> pdb=" O ILE P 165 " (cutoff:3.500A) removed outlier: 5.406A pdb=" N GLN P 170 " --> pdb=" O LEU P 166 " (cutoff:3.500A) removed outlier: 6.305A pdb=" N VAL P 171 " --> pdb=" O GLN P 167 " (cutoff:3.500A) removed outlier: 5.654A pdb=" N GLU P 172 " --> pdb=" O GLU P 168 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N THR P 173 " --> pdb=" O LEU P 169 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N TYR P 174 " --> pdb=" O GLN P 170 " (cutoff:3.500A) Processing helix chain 'P' and resid 178 through 197 Processing helix chain 'P' and resid 198 through 215 removed outlier: 5.497A pdb=" N THR P 202 " --> pdb=" O ASP P 198 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N ILE P 209 " --> pdb=" O ILE P 205 " (cutoff:3.500A) removed outlier: 6.025A pdb=" N ASN P 210 " --> pdb=" O SER P 206 " (cutoff:3.500A) removed outlier: 7.140A pdb=" N THR P 211 " --> pdb=" O LYS P 207 " (cutoff:3.500A) removed outlier: 9.166A pdb=" N LYS P 212 " --> pdb=" O LYS P 208 " (cutoff:3.500A) removed outlier: 7.640A pdb=" N PHE P 213 " --> pdb=" O ILE P 209 " (cutoff:3.500A) removed outlier: 4.595A pdb=" N PHE P 214 " --> pdb=" O ASN P 210 " (cutoff:3.500A) removed outlier: 4.327A pdb=" N GLN P 215 " --> pdb=" O THR P 211 " (cutoff:3.500A) Processing helix chain 'P' and resid 216 through 238 removed outlier: 3.540A pdb=" N LEU P 222 " --> pdb=" O ASN P 218 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N LEU P 224 " --> pdb=" O GLU P 220 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N LYS P 225 " --> pdb=" O LYS P 221 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N TYR P 226 " --> pdb=" O LEU P 222 " (cutoff:3.500A) Processing helix chain 'P' and resid 239 through 253 removed outlier: 5.052A pdb=" N ILE P 243 " --> pdb=" O SER P 239 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N THR P 253 " --> pdb=" O ALA P 249 " (cutoff:3.500A) Processing helix chain 'P' and resid 254 through 260 removed outlier: 3.782A pdb=" N GLU P 259 " --> pdb=" O CYS P 255 " (cutoff:3.500A) removed outlier: 5.657A pdb=" N SER P 260 " --> pdb=" O ILE P 256 " (cutoff:3.500A) Processing helix chain 'P' and resid 261 through 278 removed outlier: 5.164A pdb=" N GLN P 265 " --> pdb=" O GLU P 261 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N ALA P 266 " --> pdb=" O LYS P 262 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N SER P 269 " --> pdb=" O GLN P 265 " (cutoff:3.500A) Proline residue: P 278 - end of helix Processing helix chain 'P' and resid 280 through 294 removed outlier: 3.776A pdb=" N ASP P 285 " --> pdb=" O ASN P 281 " (cutoff:3.500A) removed outlier: 5.540A pdb=" N LYS P 294 " --> pdb=" O ILE P 290 " (cutoff:3.500A) Processing helix chain 'P' and resid 295 through 300 removed outlier: 3.929A pdb=" N ILE P 299 " --> pdb=" O LYS P 295 " (cutoff:3.500A) Proline residue: P 300 - end of helix No H-bonds generated for 'chain 'P' and resid 295 through 300' Processing helix chain 'P' and resid 301 through 312 removed outlier: 3.546A pdb=" N THR P 311 " --> pdb=" O LYS P 307 " (cutoff:3.500A) removed outlier: 5.869A pdb=" N MET P 312 " --> pdb=" O LEU P 308 " (cutoff:3.500A) Processing helix chain 'P' and resid 316 through 325 removed outlier: 3.736A pdb=" N LEU P 320 " --> pdb=" O ARG P 316 " (cutoff:3.500A) Processing helix chain 'P' and resid 326 through 331 removed outlier: 3.908A pdb=" N GLY P 331 " --> pdb=" O GLU P 327 " (cutoff:3.500A) Processing helix chain 'P' and resid 345 through 370 removed outlier: 4.024A pdb=" N ARG P 350 " --> pdb=" O GLU P 346 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N TRP P 351 " --> pdb=" O GLY P 347 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LYS P 352 " --> pdb=" O GLU P 348 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASP P 353 " --> pdb=" O LYS P 349 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N ALA P 367 " --> pdb=" O ILE P 363 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N LYS P 368 " --> pdb=" O ARG P 364 " (cutoff:3.500A) Processing helix chain 'P' and resid 374 through 383 removed outlier: 4.445A pdb=" N MET P 378 " --> pdb=" O THR P 374 " (cutoff:3.500A) Processing helix chain 'P' and resid 385 through 400 removed outlier: 3.648A pdb=" N SER P 389 " --> pdb=" O SER P 385 " (cutoff:3.500A) Processing helix chain 'P' and resid 420 through 453 removed outlier: 3.622A pdb=" N LEU P 424 " --> pdb=" O ASP P 420 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N SER P 437 " --> pdb=" O ASN P 433 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N THR P 443 " --> pdb=" O VAL P 439 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N HIS P 444 " --> pdb=" O ASN P 440 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N LEU P 445 " --> pdb=" O LYS P 441 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ILE P 446 " --> pdb=" O THR P 442 " (cutoff:3.500A) Processing helix chain '3' and resid 5 through 24 removed outlier: 3.681A pdb=" N ARG 3 12 " --> pdb=" O ARG 3 8 " (cutoff:3.500A) Processing helix chain '3' and resid 41 through 55 removed outlier: 4.886A pdb=" N GLU 3 45 " --> pdb=" O GLN 3 41 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N THR 3 46 " --> pdb=" O GLU 3 42 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N LEU 3 47 " --> pdb=" O VAL 3 43 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N LEU 3 50 " --> pdb=" O THR 3 46 " (cutoff:3.500A) removed outlier: 4.041A pdb=" N THR 3 54 " --> pdb=" O LEU 3 50 " (cutoff:3.500A) removed outlier: 4.182A pdb=" N ARG 3 55 " --> pdb=" O GLU 3 51 " (cutoff:3.500A) Processing helix chain '3' and resid 56 through 78 removed outlier: 3.501A pdb=" N VAL 3 61 " --> pdb=" O ALA 3 57 " (cutoff:3.500A) removed outlier: 3.528A pdb=" N VAL 3 71 " --> pdb=" O LEU 3 67 " (cutoff:3.500A) removed outlier: 4.160A pdb=" N ALA 3 77 " --> pdb=" O MET 3 73 " (cutoff:3.500A) Processing helix chain '3' and resid 79 through 94 removed outlier: 5.294A pdb=" N LEU 3 83 " --> pdb=" O GLU 3 79 " (cutoff:3.500A) removed outlier: 4.301A pdb=" N GLU 3 85 " --> pdb=" O ASP 3 81 " (cutoff:3.500A) removed outlier: 3.674A pdb=" N ARG 3 94 " --> pdb=" O LEU 3 90 " (cutoff:3.500A) Processing helix chain '3' and resid 99 through 112 removed outlier: 3.935A pdb=" N VAL 3 105 " --> pdb=" O VAL 3 101 " (cutoff:3.500A) removed outlier: 3.559A pdb=" N GLN 3 106 " --> pdb=" O ALA 3 102 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N THR 3 110 " --> pdb=" O GLN 3 106 " (cutoff:3.500A) removed outlier: 4.780A pdb=" N VAL 3 112 " --> pdb=" O CYS 3 108 " (cutoff:3.500A) Processing helix chain '3' and resid 117 through 132 removed outlier: 3.896A pdb=" N LEU 3 122 " --> pdb=" O LEU 3 118 " (cutoff:3.500A) Processing helix chain '3' and resid 139 through 155 removed outlier: 4.111A pdb=" N ALA 3 143 " --> pdb=" O GLU 3 139 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N ARG 3 144 " --> pdb=" O ILE 3 140 " (cutoff:3.500A) removed outlier: 3.777A pdb=" N THR 3 148 " --> pdb=" O ARG 3 144 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N GLU 3 154 " --> pdb=" O ALA 3 150 " (cutoff:3.500A) Processing helix chain '3' and resid 160 through 174 removed outlier: 4.305A pdb=" N ILE 3 165 " --> pdb=" O GLU 3 161 " (cutoff:3.500A) removed outlier: 4.054A pdb=" N LEU 3 166 " --> pdb=" O ALA 3 162 " (cutoff:3.500A) removed outlier: 4.458A pdb=" N GLU 3 168 " --> pdb=" O SER 3 164 " (cutoff:3.500A) removed outlier: 3.734A pdb=" N LEU 3 169 " --> pdb=" O ILE 3 165 " (cutoff:3.500A) removed outlier: 5.406A pdb=" N GLN 3 170 " --> pdb=" O LEU 3 166 " (cutoff:3.500A) removed outlier: 6.305A pdb=" N VAL 3 171 " --> pdb=" O GLN 3 167 " (cutoff:3.500A) removed outlier: 5.654A pdb=" N GLU 3 172 " --> pdb=" O GLU 3 168 " (cutoff:3.500A) removed outlier: 4.505A pdb=" N THR 3 173 " --> pdb=" O LEU 3 169 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N TYR 3 174 " --> pdb=" O GLN 3 170 " (cutoff:3.500A) Processing helix chain '3' and resid 178 through 197 Processing helix chain '3' and resid 198 through 215 removed outlier: 5.497A pdb=" N THR 3 202 " --> pdb=" O ASP 3 198 " (cutoff:3.500A) removed outlier: 4.828A pdb=" N ILE 3 209 " --> pdb=" O ILE 3 205 " (cutoff:3.500A) removed outlier: 6.025A pdb=" N ASN 3 210 " --> pdb=" O SER 3 206 " (cutoff:3.500A) removed outlier: 7.140A pdb=" N THR 3 211 " --> pdb=" O LYS 3 207 " (cutoff:3.500A) removed outlier: 9.166A pdb=" N LYS 3 212 " --> pdb=" O LYS 3 208 " (cutoff:3.500A) removed outlier: 7.640A pdb=" N PHE 3 213 " --> pdb=" O ILE 3 209 " (cutoff:3.500A) removed outlier: 4.595A pdb=" N PHE 3 214 " --> pdb=" O ASN 3 210 " (cutoff:3.500A) removed outlier: 4.327A pdb=" N GLN 3 215 " --> pdb=" O THR 3 211 " (cutoff:3.500A) Processing helix chain '3' and resid 216 through 238 removed outlier: 3.540A pdb=" N LEU 3 222 " --> pdb=" O ASN 3 218 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N LEU 3 224 " --> pdb=" O GLU 3 220 " (cutoff:3.500A) removed outlier: 5.101A pdb=" N LYS 3 225 " --> pdb=" O LYS 3 221 " (cutoff:3.500A) removed outlier: 4.049A pdb=" N TYR 3 226 " --> pdb=" O LEU 3 222 " (cutoff:3.500A) Processing helix chain '3' and resid 239 through 253 removed outlier: 5.052A pdb=" N ILE 3 243 " --> pdb=" O SER 3 239 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N THR 3 253 " --> pdb=" O ALA 3 249 " (cutoff:3.500A) Processing helix chain '3' and resid 254 through 260 removed outlier: 3.782A pdb=" N GLU 3 259 " --> pdb=" O CYS 3 255 " (cutoff:3.500A) removed outlier: 5.657A pdb=" N SER 3 260 " --> pdb=" O ILE 3 256 " (cutoff:3.500A) Processing helix chain '3' and resid 261 through 278 removed outlier: 5.164A pdb=" N GLN 3 265 " --> pdb=" O GLU 3 261 " (cutoff:3.500A) removed outlier: 4.118A pdb=" N ALA 3 266 " --> pdb=" O LYS 3 262 " (cutoff:3.500A) removed outlier: 3.572A pdb=" N SER 3 269 " --> pdb=" O GLN 3 265 " (cutoff:3.500A) Proline residue: 3 278 - end of helix Processing helix chain '3' and resid 280 through 294 removed outlier: 3.776A pdb=" N ASP 3 285 " --> pdb=" O ASN 3 281 " (cutoff:3.500A) removed outlier: 5.540A pdb=" N LYS 3 294 " --> pdb=" O ILE 3 290 " (cutoff:3.500A) Processing helix chain '3' and resid 295 through 300 removed outlier: 3.929A pdb=" N ILE 3 299 " --> pdb=" O LYS 3 295 " (cutoff:3.500A) Proline residue: 3 300 - end of helix No H-bonds generated for 'chain '3' and resid 295 through 300' Processing helix chain '3' and resid 301 through 312 removed outlier: 3.546A pdb=" N THR 3 311 " --> pdb=" O LYS 3 307 " (cutoff:3.500A) removed outlier: 5.869A pdb=" N MET 3 312 " --> pdb=" O LEU 3 308 " (cutoff:3.500A) Processing helix chain '3' and resid 316 through 325 removed outlier: 3.736A pdb=" N LEU 3 320 " --> pdb=" O ARG 3 316 " (cutoff:3.500A) Processing helix chain '3' and resid 326 through 331 removed outlier: 3.908A pdb=" N GLY 3 331 " --> pdb=" O GLU 3 327 " (cutoff:3.500A) Processing helix chain '3' and resid 345 through 370 removed outlier: 4.024A pdb=" N ARG 3 350 " --> pdb=" O GLU 3 346 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N TRP 3 351 " --> pdb=" O GLY 3 347 " (cutoff:3.500A) removed outlier: 3.987A pdb=" N LYS 3 352 " --> pdb=" O GLU 3 348 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASP 3 353 " --> pdb=" O LYS 3 349 " (cutoff:3.500A) removed outlier: 3.610A pdb=" N ALA 3 367 " --> pdb=" O ILE 3 363 " (cutoff:3.500A) removed outlier: 4.181A pdb=" N LYS 3 368 " --> pdb=" O ARG 3 364 " (cutoff:3.500A) Processing helix chain '3' and resid 374 through 383 removed outlier: 4.445A pdb=" N MET 3 378 " --> pdb=" O THR 3 374 " (cutoff:3.500A) Processing helix chain '3' and resid 385 through 400 removed outlier: 3.648A pdb=" N SER 3 389 " --> pdb=" O SER 3 385 " (cutoff:3.500A) Processing helix chain '3' and resid 420 through 453 removed outlier: 3.622A pdb=" N LEU 3 424 " --> pdb=" O ASP 3 420 " (cutoff:3.500A) removed outlier: 3.515A pdb=" N SER 3 437 " --> pdb=" O ASN 3 433 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N THR 3 443 " --> pdb=" O VAL 3 439 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N HIS 3 444 " --> pdb=" O ASN 3 440 " (cutoff:3.500A) removed outlier: 3.979A pdb=" N LEU 3 445 " --> pdb=" O LYS 3 441 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ILE 3 446 " --> pdb=" O THR 3 442 " (cutoff:3.500A) Processing helix chain 'Q' and resid 2 through 16 removed outlier: 3.716A pdb=" N VAL Q 7 " --> pdb=" O ALA Q 3 " (cutoff:3.500A) removed outlier: 3.996A pdb=" N GLU Q 8 " --> pdb=" O ALA Q 4 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N LEU Q 16 " --> pdb=" O ALA Q 12 " (cutoff:3.500A) Processing helix chain 'Q' and resid 18 through 32 removed outlier: 3.524A pdb=" N ILE Q 24 " --> pdb=" O ARG Q 20 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ASP Q 25 " --> pdb=" O GLU Q 21 " (cutoff:3.500A) Processing helix chain 'Q' and resid 35 through 40 removed outlier: 6.398A pdb=" N ASP Q 39 " --> pdb=" O ILE Q 35 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N GLU Q 40 " --> pdb=" O GLN Q 36 " (cutoff:3.500A) No H-bonds generated for 'chain 'Q' and resid 35 through 40' Processing helix chain 'Q' and resid 41 through 60 Processing helix chain 'Q' and resid 66 through 76 removed outlier: 3.705A pdb=" N LEU Q 70 " --> pdb=" O LEU Q 66 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N LYS Q 71 " --> pdb=" O GLY Q 67 " (cutoff:3.500A) Proline residue: Q 75 - end of helix Processing helix chain 'Q' and resid 81 through 100 removed outlier: 3.853A pdb=" N LEU Q 92 " --> pdb=" O LEU Q 88 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU Q 93 " --> pdb=" O VAL Q 89 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N LEU Q 95 " --> pdb=" O SER Q 91 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N LEU Q 97 " --> pdb=" O LEU Q 93 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N MET Q 99 " --> pdb=" O LEU Q 95 " (cutoff:3.500A) removed outlier: 5.315A pdb=" N GLU Q 100 " --> pdb=" O PHE Q 96 " (cutoff:3.500A) Processing helix chain 'Q' and resid 102 through 121 removed outlier: 4.019A pdb=" N LYS Q 118 " --> pdb=" O ILE Q 114 " (cutoff:3.500A) Processing helix chain 'Q' and resid 122 through 141 removed outlier: 3.716A pdb=" N ARG Q 126 " --> pdb=" O ARG Q 122 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ALA Q 128 " --> pdb=" O PHE Q 124 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ARG Q 132 " --> pdb=" O ALA Q 128 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N LYS Q 141 " --> pdb=" O TYR Q 137 " (cutoff:3.500A) Processing helix chain 'Q' and resid 142 through 161 removed outlier: 4.737A pdb=" N ALA Q 146 " --> pdb=" O ARG Q 142 " (cutoff:3.500A) removed outlier: 5.409A pdb=" N ARG Q 155 " --> pdb=" O SER Q 151 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLU Q 156 " --> pdb=" O GLN Q 152 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N LEU Q 157 " --> pdb=" O LEU Q 153 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N LYS Q 158 " --> pdb=" O LEU Q 154 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N LYS Q 159 " --> pdb=" O ARG Q 155 " (cutoff:3.500A) removed outlier: 5.249A pdb=" N MET Q 160 " --> pdb=" O GLU Q 156 " (cutoff:3.500A) Processing helix chain 'Q' and resid 162 through 181 removed outlier: 3.680A pdb=" N THR Q 176 " --> pdb=" O LEU Q 172 " (cutoff:3.500A) Processing helix chain 'Q' and resid 182 through 201 removed outlier: 3.711A pdb=" N ILE Q 200 " --> pdb=" O THR Q 196 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N TYR Q 201 " --> pdb=" O ALA Q 197 " (cutoff:3.500A) Processing helix chain 'Q' and resid 204 through 222 removed outlier: 3.981A pdb=" N SER Q 214 " --> pdb=" O LEU Q 210 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N GLU Q 221 " --> pdb=" O ILE Q 217 " (cutoff:3.500A) removed outlier: 4.594A pdb=" N GLU Q 222 " --> pdb=" O HIS Q 218 " (cutoff:3.500A) Processing helix chain 'Q' and resid 226 through 242 removed outlier: 3.992A pdb=" N TYR Q 231 " --> pdb=" O THR Q 227 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N GLU Q 234 " --> pdb=" O SER Q 230 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N TYR Q 239 " --> pdb=" O ALA Q 235 " (cutoff:3.500A) Processing helix chain 'Q' and resid 244 through 262 removed outlier: 4.898A pdb=" N ILE Q 248 " --> pdb=" O SER Q 244 " (cutoff:3.500A) removed outlier: 4.851A pdb=" N THR Q 249 " --> pdb=" O PRO Q 245 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N LYS Q 252 " --> pdb=" O ILE Q 248 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N TYR Q 253 " --> pdb=" O THR Q 249 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N LYS Q 258 " --> pdb=" O MET Q 254 " (cutoff:3.500A) Processing helix chain 'Q' and resid 263 through 272 removed outlier: 3.757A pdb=" N VAL Q 267 " --> pdb=" O THR Q 263 " (cutoff:3.500A) removed outlier: 4.465A pdb=" N SER Q 272 " --> pdb=" O GLN Q 268 " (cutoff:3.500A) Processing helix chain 'Q' and resid 281 through 297 removed outlier: 3.821A pdb=" N GLU Q 285 " --> pdb=" O GLY Q 281 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ALA Q 286 " --> pdb=" O ARG Q 282 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N LEU Q 287 " --> pdb=" O GLN Q 283 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N ARG Q 297 " --> pdb=" O ALA Q 293 " (cutoff:3.500A) Processing helix chain 'Q' and resid 298 through 309 removed outlier: 4.146A pdb=" N PHE Q 302 " --> pdb=" O SER Q 298 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N TYR Q 309 " --> pdb=" O ALA Q 305 " (cutoff:3.500A) Processing helix chain 'Q' and resid 310 through 316 removed outlier: 4.672A pdb=" N ASP Q 315 " --> pdb=" O ALA Q 311 " (cutoff:3.500A) removed outlier: 4.020A pdb=" N ASP Q 316 " --> pdb=" O GLU Q 312 " (cutoff:3.500A) Processing helix chain 'Q' and resid 317 through 340 removed outlier: 6.193A pdb=" N THR Q 321 " --> pdb=" O PRO Q 317 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N HIS Q 322 " --> pdb=" O ILE Q 318 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N ALA Q 324 " --> pdb=" O SER Q 320 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N LYS Q 325 " --> pdb=" O THR Q 321 " (cutoff:3.500A) Processing helix chain 'Q' and resid 346 through 355 removed outlier: 3.836A pdb=" N ILE Q 350 " --> pdb=" O GLN Q 346 " (cutoff:3.500A) Processing helix chain 'Q' and resid 357 through 372 removed outlier: 3.657A pdb=" N GLN Q 367 " --> pdb=" O ARG Q 363 " (cutoff:3.500A) Processing helix chain 'Q' and resid 394 through 422 removed outlier: 3.610A pdb=" N GLU Q 398 " --> pdb=" O ASP Q 394 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N ASP Q 412 " --> pdb=" O SER Q 408 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LYS Q 417 " --> pdb=" O SER Q 413 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N LYS Q 420 " --> pdb=" O ASN Q 416 " (cutoff:3.500A) Processing helix chain '4' and resid 2 through 16 removed outlier: 3.716A pdb=" N VAL 4 7 " --> pdb=" O ALA 4 3 " (cutoff:3.500A) removed outlier: 3.996A pdb=" N GLU 4 8 " --> pdb=" O ALA 4 4 " (cutoff:3.500A) removed outlier: 3.776A pdb=" N LEU 4 16 " --> pdb=" O ALA 4 12 " (cutoff:3.500A) Processing helix chain '4' and resid 18 through 32 removed outlier: 3.524A pdb=" N ILE 4 24 " --> pdb=" O ARG 4 20 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N ASP 4 25 " --> pdb=" O GLU 4 21 " (cutoff:3.500A) Processing helix chain '4' and resid 35 through 40 removed outlier: 6.398A pdb=" N ASP 4 39 " --> pdb=" O ILE 4 35 " (cutoff:3.500A) removed outlier: 6.708A pdb=" N GLU 4 40 " --> pdb=" O GLN 4 36 " (cutoff:3.500A) No H-bonds generated for 'chain '4' and resid 35 through 40' Processing helix chain '4' and resid 41 through 60 Processing helix chain '4' and resid 66 through 76 removed outlier: 3.705A pdb=" N LEU 4 70 " --> pdb=" O LEU 4 66 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N LYS 4 71 " --> pdb=" O GLY 4 67 " (cutoff:3.500A) Proline residue: 4 75 - end of helix Processing helix chain '4' and resid 81 through 100 removed outlier: 3.853A pdb=" N LEU 4 92 " --> pdb=" O LEU 4 88 " (cutoff:3.500A) removed outlier: 3.878A pdb=" N LEU 4 93 " --> pdb=" O VAL 4 89 " (cutoff:3.500A) removed outlier: 3.732A pdb=" N LEU 4 95 " --> pdb=" O SER 4 91 " (cutoff:3.500A) removed outlier: 3.538A pdb=" N LEU 4 97 " --> pdb=" O LEU 4 93 " (cutoff:3.500A) removed outlier: 3.893A pdb=" N MET 4 99 " --> pdb=" O LEU 4 95 " (cutoff:3.500A) removed outlier: 5.315A pdb=" N GLU 4 100 " --> pdb=" O PHE 4 96 " (cutoff:3.500A) Processing helix chain '4' and resid 102 through 121 removed outlier: 4.019A pdb=" N LYS 4 118 " --> pdb=" O ILE 4 114 " (cutoff:3.500A) Processing helix chain '4' and resid 122 through 141 removed outlier: 3.716A pdb=" N ARG 4 126 " --> pdb=" O ARG 4 122 " (cutoff:3.500A) removed outlier: 3.552A pdb=" N ALA 4 128 " --> pdb=" O PHE 4 124 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ARG 4 132 " --> pdb=" O ALA 4 128 " (cutoff:3.500A) removed outlier: 3.919A pdb=" N LYS 4 141 " --> pdb=" O TYR 4 137 " (cutoff:3.500A) Processing helix chain '4' and resid 142 through 161 removed outlier: 4.737A pdb=" N ALA 4 146 " --> pdb=" O ARG 4 142 " (cutoff:3.500A) removed outlier: 5.409A pdb=" N ARG 4 155 " --> pdb=" O SER 4 151 " (cutoff:3.500A) removed outlier: 4.300A pdb=" N GLU 4 156 " --> pdb=" O GLN 4 152 " (cutoff:3.500A) removed outlier: 3.702A pdb=" N LEU 4 157 " --> pdb=" O LEU 4 153 " (cutoff:3.500A) removed outlier: 3.602A pdb=" N LYS 4 158 " --> pdb=" O LEU 4 154 " (cutoff:3.500A) removed outlier: 3.551A pdb=" N LYS 4 159 " --> pdb=" O ARG 4 155 " (cutoff:3.500A) removed outlier: 5.249A pdb=" N MET 4 160 " --> pdb=" O GLU 4 156 " (cutoff:3.500A) Processing helix chain '4' and resid 162 through 181 removed outlier: 3.680A pdb=" N THR 4 176 " --> pdb=" O LEU 4 172 " (cutoff:3.500A) Processing helix chain '4' and resid 182 through 201 removed outlier: 3.711A pdb=" N ILE 4 200 " --> pdb=" O THR 4 196 " (cutoff:3.500A) removed outlier: 4.596A pdb=" N TYR 4 201 " --> pdb=" O ALA 4 197 " (cutoff:3.500A) Processing helix chain '4' and resid 204 through 222 removed outlier: 3.981A pdb=" N SER 4 214 " --> pdb=" O LEU 4 210 " (cutoff:3.500A) removed outlier: 3.852A pdb=" N GLU 4 221 " --> pdb=" O ILE 4 217 " (cutoff:3.500A) removed outlier: 4.594A pdb=" N GLU 4 222 " --> pdb=" O HIS 4 218 " (cutoff:3.500A) Processing helix chain '4' and resid 226 through 242 removed outlier: 3.992A pdb=" N TYR 4 231 " --> pdb=" O THR 4 227 " (cutoff:3.500A) removed outlier: 3.812A pdb=" N GLU 4 234 " --> pdb=" O SER 4 230 " (cutoff:3.500A) removed outlier: 3.720A pdb=" N TYR 4 239 " --> pdb=" O ALA 4 235 " (cutoff:3.500A) Processing helix chain '4' and resid 244 through 262 removed outlier: 4.898A pdb=" N ILE 4 248 " --> pdb=" O SER 4 244 " (cutoff:3.500A) removed outlier: 4.851A pdb=" N THR 4 249 " --> pdb=" O PRO 4 245 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N LYS 4 252 " --> pdb=" O ILE 4 248 " (cutoff:3.500A) removed outlier: 3.865A pdb=" N TYR 4 253 " --> pdb=" O THR 4 249 " (cutoff:3.500A) removed outlier: 3.840A pdb=" N LYS 4 258 " --> pdb=" O MET 4 254 " (cutoff:3.500A) Processing helix chain '4' and resid 263 through 272 removed outlier: 3.757A pdb=" N VAL 4 267 " --> pdb=" O THR 4 263 " (cutoff:3.500A) removed outlier: 4.465A pdb=" N SER 4 272 " --> pdb=" O GLN 4 268 " (cutoff:3.500A) Processing helix chain '4' and resid 281 through 297 removed outlier: 3.821A pdb=" N GLU 4 285 " --> pdb=" O GLY 4 281 " (cutoff:3.500A) removed outlier: 3.869A pdb=" N ALA 4 286 " --> pdb=" O ARG 4 282 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N LEU 4 287 " --> pdb=" O GLN 4 283 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N ARG 4 297 " --> pdb=" O ALA 4 293 " (cutoff:3.500A) Processing helix chain '4' and resid 298 through 309 removed outlier: 4.146A pdb=" N PHE 4 302 " --> pdb=" O SER 4 298 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N TYR 4 309 " --> pdb=" O ALA 4 305 " (cutoff:3.500A) Processing helix chain '4' and resid 310 through 316 removed outlier: 4.672A pdb=" N ASP 4 315 " --> pdb=" O ALA 4 311 " (cutoff:3.500A) removed outlier: 4.020A pdb=" N ASP 4 316 " --> pdb=" O GLU 4 312 " (cutoff:3.500A) Processing helix chain '4' and resid 317 through 340 removed outlier: 6.193A pdb=" N THR 4 321 " --> pdb=" O PRO 4 317 " (cutoff:3.500A) removed outlier: 4.017A pdb=" N HIS 4 322 " --> pdb=" O ILE 4 318 " (cutoff:3.500A) removed outlier: 4.175A pdb=" N ALA 4 324 " --> pdb=" O SER 4 320 " (cutoff:3.500A) removed outlier: 4.536A pdb=" N LYS 4 325 " --> pdb=" O THR 4 321 " (cutoff:3.500A) Processing helix chain '4' and resid 346 through 355 removed outlier: 3.836A pdb=" N ILE 4 350 " --> pdb=" O GLN 4 346 " (cutoff:3.500A) Processing helix chain '4' and resid 357 through 372 removed outlier: 3.657A pdb=" N GLN 4 367 " --> pdb=" O ARG 4 363 " (cutoff:3.500A) Processing helix chain '4' and resid 394 through 422 removed outlier: 3.610A pdb=" N GLU 4 398 " --> pdb=" O ASP 4 394 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N ASP 4 412 " --> pdb=" O SER 4 408 " (cutoff:3.500A) removed outlier: 3.640A pdb=" N LYS 4 417 " --> pdb=" O SER 4 413 " (cutoff:3.500A) removed outlier: 4.296A pdb=" N LYS 4 420 " --> pdb=" O ASN 4 416 " (cutoff:3.500A) Processing helix chain 'R' and resid 16 through 28 removed outlier: 4.639A pdb=" N ALA R 20 " --> pdb=" O ASP R 16 " (cutoff:3.500A) Processing helix chain 'R' and resid 35 through 49 removed outlier: 4.353A pdb=" N ASP R 39 " --> pdb=" O ALA R 35 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ASN R 48 " --> pdb=" O ALA R 44 " (cutoff:3.500A) Processing helix chain 'R' and resid 50 through 62 removed outlier: 5.413A pdb=" N TYR R 54 " --> pdb=" O MET R 50 " (cutoff:3.500A) Processing helix chain 'R' and resid 66 through 95 removed outlier: 3.686A pdb=" N LEU R 70 " --> pdb=" O ASP R 66 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N LYS R 93 " --> pdb=" O GLU R 89 " (cutoff:3.500A) Processing helix chain 'R' and resid 96 through 115 removed outlier: 3.598A pdb=" N ASP R 102 " --> pdb=" O SER R 98 " (cutoff:3.500A) Processing helix chain 'R' and resid 116 through 131 removed outlier: 3.607A pdb=" N LYS R 130 " --> pdb=" O LYS R 126 " (cutoff:3.500A) Processing helix chain 'R' and resid 133 through 152 removed outlier: 4.372A pdb=" N ARG R 137 " --> pdb=" O ALA R 133 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N VAL R 141 " --> pdb=" O ARG R 137 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY R 148 " --> pdb=" O LEU R 144 " (cutoff:3.500A) Processing helix chain 'R' and resid 154 through 171 removed outlier: 4.271A pdb=" N ASN R 160 " --> pdb=" O LEU R 156 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N GLY R 171 " --> pdb=" O LEU R 167 " (cutoff:3.500A) Processing helix chain 'R' and resid 173 through 192 removed outlier: 3.844A pdb=" N ARG R 177 " --> pdb=" O ASP R 173 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N ASN R 178 " --> pdb=" O TRP R 174 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N ARG R 179 " --> pdb=" O ASP R 175 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N ARG R 192 " --> pdb=" O CYS R 188 " (cutoff:3.500A) Processing helix chain 'R' and resid 193 through 208 removed outlier: 4.012A pdb=" N ALA R 197 " --> pdb=" O ASP R 193 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N GLU R 199 " --> pdb=" O LYS R 195 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU R 200 " --> pdb=" O GLN R 196 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL R 205 " --> pdb=" O PHE R 201 " (cutoff:3.500A) removed outlier: 5.064A pdb=" N SER R 206 " --> pdb=" O LEU R 202 " (cutoff:3.500A) removed outlier: 4.649A pdb=" N THR R 207 " --> pdb=" O ASP R 203 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N PHE R 208 " --> pdb=" O THR R 204 " (cutoff:3.500A) Processing helix chain 'R' and resid 215 through 231 removed outlier: 3.683A pdb=" N PHE R 219 " --> pdb=" O ASP R 215 " (cutoff:3.500A) Processing helix chain 'R' and resid 232 through 240 Processing helix chain 'R' and resid 243 through 254 removed outlier: 4.034A pdb=" N GLU R 248 " --> pdb=" O ALA R 244 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N VAL R 249 " --> pdb=" O GLU R 245 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N SER R 252 " --> pdb=" O GLU R 248 " (cutoff:3.500A) Proline residue: R 254 - end of helix Processing helix chain 'R' and resid 255 through 266 removed outlier: 3.547A pdb=" N CYS R 266 " --> pdb=" O SER R 262 " (cutoff:3.500A) Processing helix chain 'R' and resid 268 through 286 removed outlier: 3.666A pdb=" N PHE R 272 " --> pdb=" O TYR R 268 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N GLN R 273 " --> pdb=" O SER R 269 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N LYS R 284 " --> pdb=" O GLN R 280 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ASP R 285 " --> pdb=" O GLU R 281 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N TRP R 286 " --> pdb=" O MET R 282 " (cutoff:3.500A) Processing helix chain 'R' and resid 290 through 310 removed outlier: 4.443A pdb=" N TYR R 294 " --> pdb=" O PRO R 290 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N VAL R 296 " --> pdb=" O TYR R 292 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N ARG R 297 " --> pdb=" O ARG R 293 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ALA R 303 " --> pdb=" O MET R 299 " (cutoff:3.500A) removed outlier: 4.913A pdb=" N SER R 310 " --> pdb=" O GLN R 306 " (cutoff:3.500A) Processing helix chain 'R' and resid 315 through 324 Processing helix chain 'R' and resid 326 through 339 removed outlier: 3.946A pdb=" N ARG R 336 " --> pdb=" O GLN R 332 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N PHE R 337 " --> pdb=" O GLU R 333 " (cutoff:3.500A) removed outlier: 4.429A pdb=" N ALA R 339 " --> pdb=" O SER R 335 " (cutoff:3.500A) Processing helix chain 'R' and resid 360 through 388 removed outlier: 3.579A pdb=" N VAL R 386 " --> pdb=" O LYS R 382 " (cutoff:3.500A) Processing helix chain '5' and resid 16 through 28 removed outlier: 4.639A pdb=" N ALA 5 20 " --> pdb=" O ASP 5 16 " (cutoff:3.500A) Processing helix chain '5' and resid 35 through 49 removed outlier: 4.353A pdb=" N ASP 5 39 " --> pdb=" O ALA 5 35 " (cutoff:3.500A) removed outlier: 3.642A pdb=" N ASN 5 48 " --> pdb=" O ALA 5 44 " (cutoff:3.500A) Processing helix chain '5' and resid 50 through 62 removed outlier: 5.413A pdb=" N TYR 5 54 " --> pdb=" O MET 5 50 " (cutoff:3.500A) Processing helix chain '5' and resid 66 through 95 removed outlier: 3.686A pdb=" N LEU 5 70 " --> pdb=" O ASP 5 66 " (cutoff:3.500A) removed outlier: 3.774A pdb=" N LYS 5 93 " --> pdb=" O GLU 5 89 " (cutoff:3.500A) Processing helix chain '5' and resid 96 through 115 removed outlier: 3.598A pdb=" N ASP 5 102 " --> pdb=" O SER 5 98 " (cutoff:3.500A) Processing helix chain '5' and resid 116 through 131 removed outlier: 3.607A pdb=" N LYS 5 130 " --> pdb=" O LYS 5 126 " (cutoff:3.500A) Processing helix chain '5' and resid 133 through 152 removed outlier: 4.372A pdb=" N ARG 5 137 " --> pdb=" O ALA 5 133 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N VAL 5 141 " --> pdb=" O ARG 5 137 " (cutoff:3.500A) removed outlier: 3.556A pdb=" N GLY 5 148 " --> pdb=" O LEU 5 144 " (cutoff:3.500A) Processing helix chain '5' and resid 154 through 171 removed outlier: 4.271A pdb=" N ASN 5 160 " --> pdb=" O LEU 5 156 " (cutoff:3.500A) removed outlier: 3.704A pdb=" N GLY 5 171 " --> pdb=" O LEU 5 167 " (cutoff:3.500A) Processing helix chain '5' and resid 173 through 192 removed outlier: 3.844A pdb=" N ARG 5 177 " --> pdb=" O ASP 5 173 " (cutoff:3.500A) removed outlier: 3.716A pdb=" N ASN 5 178 " --> pdb=" O TRP 5 174 " (cutoff:3.500A) removed outlier: 3.725A pdb=" N ARG 5 179 " --> pdb=" O ASP 5 175 " (cutoff:3.500A) removed outlier: 4.433A pdb=" N ARG 5 192 " --> pdb=" O CYS 5 188 " (cutoff:3.500A) Processing helix chain '5' and resid 193 through 208 removed outlier: 4.012A pdb=" N ALA 5 197 " --> pdb=" O ASP 5 193 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N GLU 5 199 " --> pdb=" O LYS 5 195 " (cutoff:3.500A) removed outlier: 3.531A pdb=" N LEU 5 200 " --> pdb=" O GLN 5 196 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N VAL 5 205 " --> pdb=" O PHE 5 201 " (cutoff:3.500A) removed outlier: 5.064A pdb=" N SER 5 206 " --> pdb=" O LEU 5 202 " (cutoff:3.500A) removed outlier: 4.649A pdb=" N THR 5 207 " --> pdb=" O ASP 5 203 " (cutoff:3.500A) removed outlier: 4.001A pdb=" N PHE 5 208 " --> pdb=" O THR 5 204 " (cutoff:3.500A) Processing helix chain '5' and resid 215 through 231 removed outlier: 3.683A pdb=" N PHE 5 219 " --> pdb=" O ASP 5 215 " (cutoff:3.500A) Processing helix chain '5' and resid 232 through 240 Processing helix chain '5' and resid 243 through 254 removed outlier: 4.034A pdb=" N GLU 5 248 " --> pdb=" O ALA 5 244 " (cutoff:3.500A) removed outlier: 3.844A pdb=" N VAL 5 249 " --> pdb=" O GLU 5 245 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N SER 5 252 " --> pdb=" O GLU 5 248 " (cutoff:3.500A) Proline residue: 5 254 - end of helix Processing helix chain '5' and resid 255 through 266 removed outlier: 3.547A pdb=" N CYS 5 266 " --> pdb=" O SER 5 262 " (cutoff:3.500A) Processing helix chain '5' and resid 268 through 286 removed outlier: 3.666A pdb=" N PHE 5 272 " --> pdb=" O TYR 5 268 " (cutoff:3.500A) removed outlier: 4.117A pdb=" N GLN 5 273 " --> pdb=" O SER 5 269 " (cutoff:3.500A) removed outlier: 5.070A pdb=" N LYS 5 284 " --> pdb=" O GLN 5 280 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N ASP 5 285 " --> pdb=" O GLU 5 281 " (cutoff:3.500A) removed outlier: 4.915A pdb=" N TRP 5 286 " --> pdb=" O MET 5 282 " (cutoff:3.500A) Processing helix chain '5' and resid 290 through 310 removed outlier: 4.443A pdb=" N TYR 5 294 " --> pdb=" O PRO 5 290 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N VAL 5 296 " --> pdb=" O TYR 5 292 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N ARG 5 297 " --> pdb=" O ARG 5 293 " (cutoff:3.500A) removed outlier: 3.925A pdb=" N ALA 5 303 " --> pdb=" O MET 5 299 " (cutoff:3.500A) removed outlier: 4.913A pdb=" N SER 5 310 " --> pdb=" O GLN 5 306 " (cutoff:3.500A) Processing helix chain '5' and resid 315 through 324 Processing helix chain '5' and resid 326 through 339 removed outlier: 3.946A pdb=" N ARG 5 336 " --> pdb=" O GLN 5 332 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N PHE 5 337 " --> pdb=" O GLU 5 333 " (cutoff:3.500A) removed outlier: 4.429A pdb=" N ALA 5 339 " --> pdb=" O SER 5 335 " (cutoff:3.500A) Processing helix chain '5' and resid 360 through 388 removed outlier: 3.579A pdb=" N VAL 5 386 " --> pdb=" O LYS 5 382 " (cutoff:3.500A) Processing helix chain 'S' and resid 57 through 70 removed outlier: 4.779A pdb=" N GLU S 61 " --> pdb=" O ALA S 57 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N HIS S 62 " --> pdb=" O ALA S 58 " (cutoff:3.500A) removed outlier: 4.036A pdb=" N THR S 69 " --> pdb=" O ARG S 65 " (cutoff:3.500A) removed outlier: 4.950A pdb=" N VAL S 70 " --> pdb=" O GLU S 66 " (cutoff:3.500A) Processing helix chain 'S' and resid 72 through 83 removed outlier: 4.437A pdb=" N LYS S 76 " --> pdb=" O LEU S 72 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N GLN S 81 " --> pdb=" O GLU S 77 " (cutoff:3.500A) Processing helix chain 'S' and resid 90 through 101 removed outlier: 3.651A pdb=" N ARG S 96 " --> pdb=" O ARG S 92 " (cutoff:3.500A) removed outlier: 4.120A pdb=" N ALA S 97 " --> pdb=" O PHE S 93 " (cutoff:3.500A) Processing helix chain 'S' and resid 104 through 116 Processing helix chain 'S' and resid 160 through 179 removed outlier: 4.177A pdb=" N TYR S 166 " --> pdb=" O GLU S 162 " (cutoff:3.500A) Processing helix chain 'S' and resid 180 through 198 removed outlier: 3.645A pdb=" N ALA S 184 " --> pdb=" O ARG S 180 " (cutoff:3.500A) Processing helix chain 'S' and resid 202 through 219 removed outlier: 3.577A pdb=" N VAL S 206 " --> pdb=" O ALA S 202 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LYS S 209 " --> pdb=" O LEU S 205 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N CYS S 210 " --> pdb=" O VAL S 206 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N ARG S 216 " --> pdb=" O TYR S 212 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N TYR S 218 " --> pdb=" O HIS S 214 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N GLU S 219 " --> pdb=" O ALA S 215 " (cutoff:3.500A) Processing helix chain 'S' and resid 225 through 242 removed outlier: 3.869A pdb=" N PHE S 230 " --> pdb=" O VAL S 226 " (cutoff:3.500A) Processing helix chain 'S' and resid 243 through 262 removed outlier: 3.596A pdb=" N SER S 262 " --> pdb=" O TYR S 258 " (cutoff:3.500A) Processing helix chain 'S' and resid 263 through 275 removed outlier: 4.103A pdb=" N ALA S 267 " --> pdb=" O LEU S 263 " (cutoff:3.500A) removed outlier: 5.103A pdb=" N VAL S 275 " --> pdb=" O VAL S 271 " (cutoff:3.500A) Processing helix chain 'S' and resid 281 through 300 removed outlier: 4.251A pdb=" N LEU S 300 " --> pdb=" O LYS S 296 " (cutoff:3.500A) Processing helix chain 'S' and resid 301 through 316 removed outlier: 4.188A pdb=" N ALA S 305 " --> pdb=" O GLU S 301 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N ARG S 307 " --> pdb=" O SER S 303 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N THR S 308 " --> pdb=" O GLU S 304 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA S 316 " --> pdb=" O ALA S 312 " (cutoff:3.500A) Processing helix chain 'S' and resid 321 through 340 removed outlier: 4.014A pdb=" N LYS S 325 " --> pdb=" O ALA S 321 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLY S 340 " --> pdb=" O GLU S 336 " (cutoff:3.500A) Processing helix chain 'S' and resid 344 through 350 removed outlier: 4.399A pdb=" N PHE S 348 " --> pdb=" O ASP S 344 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N ARG S 349 " --> pdb=" O ARG S 345 " (cutoff:3.500A) removed outlier: 4.996A pdb=" N GLN S 350 " --> pdb=" O LEU S 346 " (cutoff:3.500A) No H-bonds generated for 'chain 'S' and resid 344 through 350' Processing helix chain 'S' and resid 351 through 358 removed outlier: 4.685A pdb=" N ARG S 355 " --> pdb=" O PRO S 351 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N SER S 356 " --> pdb=" O SER S 352 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N MET S 358 " --> pdb=" O LYS S 354 " (cutoff:3.500A) Processing helix chain 'S' and resid 359 through 370 removed outlier: 3.939A pdb=" N GLN S 365 " --> pdb=" O PHE S 361 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ALA S 366 " --> pdb=" O LEU S 362 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N THR S 369 " --> pdb=" O GLN S 365 " (cutoff:3.500A) Processing helix chain 'S' and resid 371 through 383 Processing helix chain 'S' and resid 384 through 390 removed outlier: 3.620A pdb=" N ALA S 388 " --> pdb=" O GLU S 384 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N ASP S 389 " --> pdb=" O LYS S 385 " (cutoff:3.500A) removed outlier: 4.537A pdb=" N GLY S 390 " --> pdb=" O PHE S 386 " (cutoff:3.500A) No H-bonds generated for 'chain 'S' and resid 384 through 390' Processing helix chain 'S' and resid 391 through 414 removed outlier: 3.842A pdb=" N ARG S 397 " --> pdb=" O THR S 393 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU S 398 " --> pdb=" O LEU S 394 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N ARG S 399 " --> pdb=" O ILE S 395 " (cutoff:3.500A) removed outlier: 5.862A pdb=" N HIS S 400 " --> pdb=" O ILE S 396 " (cutoff:3.500A) removed outlier: 4.456A pdb=" N ASN S 401 " --> pdb=" O ARG S 397 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ILE S 403 " --> pdb=" O ARG S 399 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N TYR S 414 " --> pdb=" O ILE S 410 " (cutoff:3.500A) Processing helix chain 'S' and resid 418 through 427 removed outlier: 3.577A pdb=" N ILE S 422 " --> pdb=" O SER S 418 " (cutoff:3.500A) Processing helix chain 'S' and resid 430 through 445 removed outlier: 3.516A pdb=" N PHE S 436 " --> pdb=" O GLU S 432 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ARG S 443 " --> pdb=" O ALA S 439 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N GLY S 445 " --> pdb=" O ALA S 441 " (cutoff:3.500A) Processing helix chain 'S' and resid 468 through 496 Proline residue: S 472 - end of helix removed outlier: 3.630A pdb=" N SER S 490 " --> pdb=" O ILE S 486 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N ARG S 495 " --> pdb=" O VAL S 491 " (cutoff:3.500A) removed outlier: 4.749A pdb=" N PHE S 496 " --> pdb=" O LYS S 492 " (cutoff:3.500A) Processing helix chain 'S' and resid 508 through 525 removed outlier: 4.156A pdb=" N ARG S 512 " --> pdb=" O ALA S 508 " (cutoff:3.500A) Processing helix chain '6' and resid 57 through 70 removed outlier: 4.779A pdb=" N GLU 6 61 " --> pdb=" O ALA 6 57 " (cutoff:3.500A) removed outlier: 3.927A pdb=" N HIS 6 62 " --> pdb=" O ALA 6 58 " (cutoff:3.500A) removed outlier: 4.036A pdb=" N THR 6 69 " --> pdb=" O ARG 6 65 " (cutoff:3.500A) removed outlier: 4.950A pdb=" N VAL 6 70 " --> pdb=" O GLU 6 66 " (cutoff:3.500A) Processing helix chain '6' and resid 72 through 83 removed outlier: 4.437A pdb=" N LYS 6 76 " --> pdb=" O LEU 6 72 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N GLN 6 81 " --> pdb=" O GLU 6 77 " (cutoff:3.500A) Processing helix chain '6' and resid 90 through 101 removed outlier: 3.651A pdb=" N ARG 6 96 " --> pdb=" O ARG 6 92 " (cutoff:3.500A) removed outlier: 4.120A pdb=" N ALA 6 97 " --> pdb=" O PHE 6 93 " (cutoff:3.500A) Processing helix chain '6' and resid 104 through 116 Processing helix chain '6' and resid 160 through 179 removed outlier: 4.177A pdb=" N TYR 6 166 " --> pdb=" O GLU 6 162 " (cutoff:3.500A) Processing helix chain '6' and resid 180 through 198 removed outlier: 3.645A pdb=" N ALA 6 184 " --> pdb=" O ARG 6 180 " (cutoff:3.500A) Processing helix chain '6' and resid 202 through 219 removed outlier: 3.577A pdb=" N VAL 6 206 " --> pdb=" O ALA 6 202 " (cutoff:3.500A) removed outlier: 4.244A pdb=" N LYS 6 209 " --> pdb=" O LEU 6 205 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N CYS 6 210 " --> pdb=" O VAL 6 206 " (cutoff:3.500A) removed outlier: 3.858A pdb=" N ARG 6 216 " --> pdb=" O TYR 6 212 " (cutoff:3.500A) removed outlier: 3.659A pdb=" N TYR 6 218 " --> pdb=" O HIS 6 214 " (cutoff:3.500A) removed outlier: 5.059A pdb=" N GLU 6 219 " --> pdb=" O ALA 6 215 " (cutoff:3.500A) Processing helix chain '6' and resid 225 through 242 removed outlier: 3.869A pdb=" N PHE 6 230 " --> pdb=" O VAL 6 226 " (cutoff:3.500A) Processing helix chain '6' and resid 243 through 262 removed outlier: 3.596A pdb=" N SER 6 262 " --> pdb=" O TYR 6 258 " (cutoff:3.500A) Processing helix chain '6' and resid 263 through 275 removed outlier: 4.103A pdb=" N ALA 6 267 " --> pdb=" O LEU 6 263 " (cutoff:3.500A) removed outlier: 5.103A pdb=" N VAL 6 275 " --> pdb=" O VAL 6 271 " (cutoff:3.500A) Processing helix chain '6' and resid 281 through 300 removed outlier: 4.251A pdb=" N LEU 6 300 " --> pdb=" O LYS 6 296 " (cutoff:3.500A) Processing helix chain '6' and resid 301 through 316 removed outlier: 4.188A pdb=" N ALA 6 305 " --> pdb=" O GLU 6 301 " (cutoff:3.500A) removed outlier: 4.361A pdb=" N ARG 6 307 " --> pdb=" O SER 6 303 " (cutoff:3.500A) removed outlier: 3.574A pdb=" N THR 6 308 " --> pdb=" O GLU 6 304 " (cutoff:3.500A) removed outlier: 3.705A pdb=" N ALA 6 316 " --> pdb=" O ALA 6 312 " (cutoff:3.500A) Processing helix chain '6' and resid 321 through 340 removed outlier: 4.014A pdb=" N LYS 6 325 " --> pdb=" O ALA 6 321 " (cutoff:3.500A) removed outlier: 3.646A pdb=" N GLY 6 340 " --> pdb=" O GLU 6 336 " (cutoff:3.500A) Processing helix chain '6' and resid 344 through 350 removed outlier: 4.399A pdb=" N PHE 6 348 " --> pdb=" O ASP 6 344 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N ARG 6 349 " --> pdb=" O ARG 6 345 " (cutoff:3.500A) removed outlier: 4.996A pdb=" N GLN 6 350 " --> pdb=" O LEU 6 346 " (cutoff:3.500A) No H-bonds generated for 'chain '6' and resid 344 through 350' Processing helix chain '6' and resid 351 through 358 removed outlier: 4.685A pdb=" N ARG 6 355 " --> pdb=" O PRO 6 351 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N SER 6 356 " --> pdb=" O SER 6 352 " (cutoff:3.500A) removed outlier: 3.904A pdb=" N MET 6 358 " --> pdb=" O LYS 6 354 " (cutoff:3.500A) Processing helix chain '6' and resid 359 through 370 removed outlier: 3.939A pdb=" N GLN 6 365 " --> pdb=" O PHE 6 361 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N ALA 6 366 " --> pdb=" O LEU 6 362 " (cutoff:3.500A) removed outlier: 3.652A pdb=" N THR 6 369 " --> pdb=" O GLN 6 365 " (cutoff:3.500A) Processing helix chain '6' and resid 371 through 383 Processing helix chain '6' and resid 384 through 390 removed outlier: 3.620A pdb=" N ALA 6 388 " --> pdb=" O GLU 6 384 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N ASP 6 389 " --> pdb=" O LYS 6 385 " (cutoff:3.500A) removed outlier: 4.537A pdb=" N GLY 6 390 " --> pdb=" O PHE 6 386 " (cutoff:3.500A) No H-bonds generated for 'chain '6' and resid 384 through 390' Processing helix chain '6' and resid 391 through 414 removed outlier: 3.842A pdb=" N ARG 6 397 " --> pdb=" O THR 6 393 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LEU 6 398 " --> pdb=" O LEU 6 394 " (cutoff:3.500A) removed outlier: 4.689A pdb=" N ARG 6 399 " --> pdb=" O ILE 6 395 " (cutoff:3.500A) removed outlier: 5.862A pdb=" N HIS 6 400 " --> pdb=" O ILE 6 396 " (cutoff:3.500A) removed outlier: 4.456A pdb=" N ASN 6 401 " --> pdb=" O ARG 6 397 " (cutoff:3.500A) removed outlier: 3.597A pdb=" N ILE 6 403 " --> pdb=" O ARG 6 399 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N TYR 6 414 " --> pdb=" O ILE 6 410 " (cutoff:3.500A) Processing helix chain '6' and resid 418 through 427 removed outlier: 3.577A pdb=" N ILE 6 422 " --> pdb=" O SER 6 418 " (cutoff:3.500A) Processing helix chain '6' and resid 430 through 445 removed outlier: 3.516A pdb=" N PHE 6 436 " --> pdb=" O GLU 6 432 " (cutoff:3.500A) removed outlier: 3.543A pdb=" N ARG 6 443 " --> pdb=" O ALA 6 439 " (cutoff:3.500A) removed outlier: 3.682A pdb=" N GLY 6 445 " --> pdb=" O ALA 6 441 " (cutoff:3.500A) Processing helix chain '6' and resid 468 through 496 Proline residue: 6 472 - end of helix removed outlier: 3.630A pdb=" N SER 6 490 " --> pdb=" O ILE 6 486 " (cutoff:3.500A) removed outlier: 3.678A pdb=" N ARG 6 495 " --> pdb=" O VAL 6 491 " (cutoff:3.500A) removed outlier: 4.749A pdb=" N PHE 6 496 " --> pdb=" O LYS 6 492 " (cutoff:3.500A) Processing helix chain '6' and resid 508 through 525 removed outlier: 4.156A pdb=" N ARG 6 512 " --> pdb=" O ALA 6 508 " (cutoff:3.500A) Processing helix chain 'T' and resid 89 through 99 removed outlier: 3.619A pdb=" N GLY T 93 " --> pdb=" O GLN T 89 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N MET T 94 " --> pdb=" O ALA T 90 " (cutoff:3.500A) Processing helix chain 'T' and resid 106 through 117 removed outlier: 4.010A pdb=" N SER T 110 " --> pdb=" O SER T 106 " (cutoff:3.500A) removed outlier: 4.543A pdb=" N LYS T 111 " --> pdb=" O PRO T 107 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N CYS T 112 " --> pdb=" O ASN T 108 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N GLU T 114 " --> pdb=" O SER T 110 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N GLU T 115 " --> pdb=" O LYS T 111 " (cutoff:3.500A) Processing helix chain 'T' and resid 135 through 159 removed outlier: 4.161A pdb=" N GLN T 140 " --> pdb=" O LEU T 136 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N ASP T 146 " --> pdb=" O ILE T 142 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N LEU T 157 " --> pdb=" O GLN T 153 " (cutoff:3.500A) Processing helix chain 'T' and resid 160 through 177 removed outlier: 4.515A pdb=" N CYS T 173 " --> pdb=" O ALA T 169 " (cutoff:3.500A) removed outlier: 5.052A pdb=" N TYR T 174 " --> pdb=" O GLN T 170 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N TYR T 175 " --> pdb=" O LEU T 171 " (cutoff:3.500A) Processing helix chain 'T' and resid 179 through 184 Proline residue: T 183 - end of helix No H-bonds generated for 'chain 'T' and resid 179 through 184' Processing helix chain 'T' and resid 185 through 203 removed outlier: 4.043A pdb=" N HIS T 189 " --> pdb=" O SER T 185 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N GLY T 193 " --> pdb=" O HIS T 189 " (cutoff:3.500A) Processing helix chain 'T' and resid 204 through 216 removed outlier: 3.512A pdb=" N PHE T 208 " --> pdb=" O ARG T 204 " (cutoff:3.500A) Proline residue: T 216 - end of helix Processing helix chain 'T' and resid 226 through 239 removed outlier: 3.845A pdb=" N LEU T 236 " --> pdb=" O LEU T 232 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU T 238 " --> pdb=" O GLN T 234 " (cutoff:3.500A) Processing helix chain 'T' and resid 240 through 254 removed outlier: 4.626A pdb=" N ILE T 251 " --> pdb=" O ALA T 247 " (cutoff:3.500A) Proline residue: T 252 - end of helix Processing helix chain 'T' and resid 255 through 279 removed outlier: 4.149A pdb=" N PHE T 259 " --> pdb=" O SER T 255 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N GLU T 270 " --> pdb=" O THR T 266 " (cutoff:3.500A) removed outlier: 4.298A pdb=" N LYS T 277 " --> pdb=" O GLY T 273 " (cutoff:3.500A) Processing helix chain 'T' and resid 283 through 292 Processing helix chain 'T' and resid 295 through 307 removed outlier: 4.349A pdb=" N MET T 299 " --> pdb=" O THR T 295 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N THR T 300 " --> pdb=" O PRO T 296 " (cutoff:3.500A) Processing helix chain 'T' and resid 328 through 348 removed outlier: 5.706A pdb=" N SER T 332 " --> pdb=" O THR T 328 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N THR T 333 " --> pdb=" O THR T 329 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N GLU T 334 " --> pdb=" O ILE T 330 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N LEU T 335 " --> pdb=" O PRO T 331 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N LYS T 337 " --> pdb=" O THR T 333 " (cutoff:3.500A) Processing helix chain 'T' and resid 118 through 124 removed outlier: 5.308A pdb=" N LEU T 123 " --> pdb=" O ARG T 118 " (cutoff:3.500A) Processing helix chain '7' and resid 89 through 99 removed outlier: 3.619A pdb=" N GLY 7 93 " --> pdb=" O GLN 7 89 " (cutoff:3.500A) removed outlier: 4.333A pdb=" N MET 7 94 " --> pdb=" O ALA 7 90 " (cutoff:3.500A) Processing helix chain '7' and resid 106 through 117 removed outlier: 4.010A pdb=" N SER 7 110 " --> pdb=" O SER 7 106 " (cutoff:3.500A) removed outlier: 4.543A pdb=" N LYS 7 111 " --> pdb=" O PRO 7 107 " (cutoff:3.500A) removed outlier: 3.816A pdb=" N CYS 7 112 " --> pdb=" O ASN 7 108 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N GLU 7 114 " --> pdb=" O SER 7 110 " (cutoff:3.500A) removed outlier: 4.514A pdb=" N GLU 7 115 " --> pdb=" O LYS 7 111 " (cutoff:3.500A) Processing helix chain '7' and resid 135 through 159 removed outlier: 4.161A pdb=" N GLN 7 140 " --> pdb=" O LEU 7 136 " (cutoff:3.500A) removed outlier: 3.843A pdb=" N ASP 7 146 " --> pdb=" O ILE 7 142 " (cutoff:3.500A) removed outlier: 4.115A pdb=" N LEU 7 157 " --> pdb=" O GLN 7 153 " (cutoff:3.500A) Processing helix chain '7' and resid 160 through 177 removed outlier: 4.515A pdb=" N CYS 7 173 " --> pdb=" O ALA 7 169 " (cutoff:3.500A) removed outlier: 5.052A pdb=" N TYR 7 174 " --> pdb=" O GLN 7 170 " (cutoff:3.500A) removed outlier: 3.670A pdb=" N TYR 7 175 " --> pdb=" O LEU 7 171 " (cutoff:3.500A) Processing helix chain '7' and resid 179 through 184 Proline residue: 7 183 - end of helix No H-bonds generated for 'chain '7' and resid 179 through 184' Processing helix chain '7' and resid 185 through 203 removed outlier: 4.043A pdb=" N HIS 7 189 " --> pdb=" O SER 7 185 " (cutoff:3.500A) removed outlier: 3.897A pdb=" N GLY 7 193 " --> pdb=" O HIS 7 189 " (cutoff:3.500A) Processing helix chain '7' and resid 204 through 216 removed outlier: 3.512A pdb=" N PHE 7 208 " --> pdb=" O ARG 7 204 " (cutoff:3.500A) Proline residue: 7 216 - end of helix Processing helix chain '7' and resid 226 through 239 removed outlier: 3.845A pdb=" N LEU 7 236 " --> pdb=" O LEU 7 232 " (cutoff:3.500A) removed outlier: 3.891A pdb=" N GLU 7 238 " --> pdb=" O GLN 7 234 " (cutoff:3.500A) Processing helix chain '7' and resid 240 through 254 removed outlier: 4.626A pdb=" N ILE 7 251 " --> pdb=" O ALA 7 247 " (cutoff:3.500A) Proline residue: 7 252 - end of helix Processing helix chain '7' and resid 255 through 279 removed outlier: 4.149A pdb=" N PHE 7 259 " --> pdb=" O SER 7 255 " (cutoff:3.500A) removed outlier: 4.270A pdb=" N GLU 7 270 " --> pdb=" O THR 7 266 " (cutoff:3.500A) removed outlier: 4.298A pdb=" N LYS 7 277 " --> pdb=" O GLY 7 273 " (cutoff:3.500A) Processing helix chain '7' and resid 283 through 292 Processing helix chain '7' and resid 295 through 307 removed outlier: 4.349A pdb=" N MET 7 299 " --> pdb=" O THR 7 295 " (cutoff:3.500A) removed outlier: 4.164A pdb=" N THR 7 300 " --> pdb=" O PRO 7 296 " (cutoff:3.500A) Processing helix chain '7' and resid 328 through 348 removed outlier: 5.706A pdb=" N SER 7 332 " --> pdb=" O THR 7 328 " (cutoff:3.500A) removed outlier: 3.958A pdb=" N THR 7 333 " --> pdb=" O THR 7 329 " (cutoff:3.500A) removed outlier: 4.398A pdb=" N GLU 7 334 " --> pdb=" O ILE 7 330 " (cutoff:3.500A) removed outlier: 4.426A pdb=" N LEU 7 335 " --> pdb=" O PRO 7 331 " (cutoff:3.500A) removed outlier: 4.040A pdb=" N LYS 7 337 " --> pdb=" O THR 7 333 " (cutoff:3.500A) Processing helix chain '7' and resid 118 through 124 removed outlier: 5.308A pdb=" N LEU 7 123 " --> pdb=" O ARG 7 118 " (cutoff:3.500A) Processing helix chain 'U' and resid 12 through 27 removed outlier: 4.055A pdb=" N LEU U 16 " --> pdb=" O HIS U 12 " (cutoff:3.500A) Processing helix chain 'U' and resid 71 through 86 removed outlier: 4.513A pdb=" N GLY U 80 " --> pdb=" O GLU U 76 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N MET U 81 " --> pdb=" O ASN U 77 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N VAL U 85 " --> pdb=" O MET U 81 " (cutoff:3.500A) Processing helix chain 'U' and resid 102 through 116 removed outlier: 5.580A pdb=" N ILE U 106 " --> pdb=" O HIS U 102 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N ALA U 107 " --> pdb=" O LYS U 103 " (cutoff:3.500A) removed outlier: 3.846A pdb=" N GLU U 110 " --> pdb=" O ILE U 106 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N LEU U 111 " --> pdb=" O ALA U 107 " (cutoff:3.500A) removed outlier: 4.200A pdb=" N ARG U 114 " --> pdb=" O GLU U 110 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N TYR U 115 " --> pdb=" O LEU U 111 " (cutoff:3.500A) Processing helix chain 'U' and resid 165 through 176 Processing helix chain 'U' and resid 185 through 217 removed outlier: 6.700A pdb=" N GLN U 189 " --> pdb=" O GLY U 185 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N VAL U 195 " --> pdb=" O ILE U 191 " (cutoff:3.500A) Processing helix chain 'U' and resid 223 through 237 removed outlier: 3.681A pdb=" N GLN U 229 " --> pdb=" O GLN U 225 " (cutoff:3.500A) Processing helix chain 'U' and resid 243 through 295 removed outlier: 3.790A pdb=" N LYS U 247 " --> pdb=" O GLN U 243 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N TYR U 250 " --> pdb=" O VAL U 246 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N ASP U 255 " --> pdb=" O LEU U 251 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N LEU U 265 " --> pdb=" O TYR U 261 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N GLU U 294 " --> pdb=" O GLY U 290 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N GLU U 295 " --> pdb=" O GLN U 291 " (cutoff:3.500A) Processing helix chain '8' and resid 12 through 27 removed outlier: 4.055A pdb=" N LEU 8 16 " --> pdb=" O HIS 8 12 " (cutoff:3.500A) Processing helix chain '8' and resid 71 through 86 removed outlier: 4.513A pdb=" N GLY 8 80 " --> pdb=" O GLU 8 76 " (cutoff:3.500A) removed outlier: 3.860A pdb=" N MET 8 81 " --> pdb=" O ASN 8 77 " (cutoff:3.500A) removed outlier: 4.432A pdb=" N VAL 8 85 " --> pdb=" O MET 8 81 " (cutoff:3.500A) Processing helix chain '8' and resid 102 through 116 removed outlier: 5.580A pdb=" N ILE 8 106 " --> pdb=" O HIS 8 102 " (cutoff:3.500A) removed outlier: 4.326A pdb=" N ALA 8 107 " --> pdb=" O LYS 8 103 " (cutoff:3.500A) removed outlier: 3.846A pdb=" N GLU 8 110 " --> pdb=" O ILE 8 106 " (cutoff:3.500A) removed outlier: 3.630A pdb=" N LEU 8 111 " --> pdb=" O ALA 8 107 " (cutoff:3.500A) removed outlier: 4.200A pdb=" N ARG 8 114 " --> pdb=" O GLU 8 110 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N TYR 8 115 " --> pdb=" O LEU 8 111 " (cutoff:3.500A) Processing helix chain '8' and resid 165 through 176 Processing helix chain '8' and resid 185 through 217 removed outlier: 6.700A pdb=" N GLN 8 189 " --> pdb=" O GLY 8 185 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N VAL 8 195 " --> pdb=" O ILE 8 191 " (cutoff:3.500A) Processing helix chain '8' and resid 223 through 237 removed outlier: 3.681A pdb=" N GLN 8 229 " --> pdb=" O GLN 8 225 " (cutoff:3.500A) Processing helix chain '8' and resid 243 through 295 removed outlier: 3.790A pdb=" N LYS 8 247 " --> pdb=" O GLN 8 243 " (cutoff:3.500A) removed outlier: 3.585A pdb=" N TYR 8 250 " --> pdb=" O VAL 8 246 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N ASP 8 255 " --> pdb=" O LEU 8 251 " (cutoff:3.500A) removed outlier: 3.924A pdb=" N LEU 8 265 " --> pdb=" O TYR 8 261 " (cutoff:3.500A) removed outlier: 3.707A pdb=" N GLU 8 294 " --> pdb=" O GLY 8 290 " (cutoff:3.500A) removed outlier: 4.221A pdb=" N GLU 8 295 " --> pdb=" O GLN 8 291 " (cutoff:3.500A) Processing helix chain 'V' and resid 34 through 49 Processing helix chain 'V' and resid 88 through 103 removed outlier: 3.808A pdb=" N MET V 98 " --> pdb=" O LYS V 94 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N THR V 102 " --> pdb=" O MET V 98 " (cutoff:3.500A) Processing helix chain 'V' and resid 123 through 137 removed outlier: 3.561A pdb=" N THR V 129 " --> pdb=" O VAL V 125 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N LEU V 136 " --> pdb=" O SER V 132 " (cutoff:3.500A) Processing helix chain 'V' and resid 190 through 195 removed outlier: 4.684A pdb=" N HIS V 194 " --> pdb=" O GLN V 190 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N GLY V 195 " --> pdb=" O ALA V 191 " (cutoff:3.500A) No H-bonds generated for 'chain 'V' and resid 190 through 195' Processing helix chain 'V' and resid 210 through 223 removed outlier: 3.543A pdb=" N LYS V 215 " --> pdb=" O GLU V 211 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ASN V 219 " --> pdb=" O LYS V 215 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N LEU V 220 " --> pdb=" O MET V 216 " (cutoff:3.500A) removed outlier: 4.405A pdb=" N HIS V 221 " --> pdb=" O LEU V 217 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N LYS V 222 " --> pdb=" O LEU V 218 " (cutoff:3.500A) removed outlier: 5.219A pdb=" N LYS V 223 " --> pdb=" O ASN V 219 " (cutoff:3.500A) Processing helix chain 'V' and resid 233 through 266 removed outlier: 3.513A pdb=" N LYS V 239 " --> pdb=" O SER V 235 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N HIS V 240 " --> pdb=" O GLU V 236 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N LEU V 251 " --> pdb=" O GLU V 247 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N LYS V 253 " --> pdb=" O LEU V 249 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N ASN V 254 " --> pdb=" O GLU V 250 " (cutoff:3.500A) removed outlier: 5.367A pdb=" N LYS V 264 " --> pdb=" O GLU V 260 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N MET V 265 " --> pdb=" O GLU V 261 " (cutoff:3.500A) removed outlier: 5.280A pdb=" N THR V 266 " --> pdb=" O GLU V 262 " (cutoff:3.500A) Processing helix chain 'V' and resid 267 through 277 removed outlier: 3.870A pdb=" N ILE V 272 " --> pdb=" O GLU V 268 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N GLY V 276 " --> pdb=" O ILE V 272 " (cutoff:3.500A) Processing helix chain 'V' and resid 279 through 308 removed outlier: 4.333A pdb=" N HIS V 283 " --> pdb=" O ASP V 279 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N VAL V 290 " --> pdb=" O GLU V 286 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N LEU V 291 " --> pdb=" O HIS V 287 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N VAL V 307 " --> pdb=" O MET V 303 " (cutoff:3.500A) Processing helix chain '9' and resid 34 through 49 Processing helix chain '9' and resid 88 through 103 removed outlier: 3.808A pdb=" N MET 9 98 " --> pdb=" O LYS 9 94 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N THR 9 102 " --> pdb=" O MET 9 98 " (cutoff:3.500A) Processing helix chain '9' and resid 123 through 137 removed outlier: 3.561A pdb=" N THR 9 129 " --> pdb=" O VAL 9 125 " (cutoff:3.500A) removed outlier: 4.252A pdb=" N LEU 9 136 " --> pdb=" O SER 9 132 " (cutoff:3.500A) Processing helix chain '9' and resid 190 through 195 removed outlier: 4.684A pdb=" N HIS 9 194 " --> pdb=" O GLN 9 190 " (cutoff:3.500A) removed outlier: 3.510A pdb=" N GLY 9 195 " --> pdb=" O ALA 9 191 " (cutoff:3.500A) No H-bonds generated for 'chain '9' and resid 190 through 195' Processing helix chain '9' and resid 210 through 223 removed outlier: 3.543A pdb=" N LYS 9 215 " --> pdb=" O GLU 9 211 " (cutoff:3.500A) removed outlier: 3.859A pdb=" N ASN 9 219 " --> pdb=" O LYS 9 215 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N LEU 9 220 " --> pdb=" O MET 9 216 " (cutoff:3.500A) removed outlier: 4.405A pdb=" N HIS 9 221 " --> pdb=" O LEU 9 217 " (cutoff:3.500A) removed outlier: 4.106A pdb=" N LYS 9 222 " --> pdb=" O LEU 9 218 " (cutoff:3.500A) removed outlier: 5.219A pdb=" N LYS 9 223 " --> pdb=" O ASN 9 219 " (cutoff:3.500A) Processing helix chain '9' and resid 233 through 266 removed outlier: 3.513A pdb=" N LYS 9 239 " --> pdb=" O SER 9 235 " (cutoff:3.500A) removed outlier: 3.755A pdb=" N HIS 9 240 " --> pdb=" O GLU 9 236 " (cutoff:3.500A) removed outlier: 3.628A pdb=" N LEU 9 251 " --> pdb=" O GLU 9 247 " (cutoff:3.500A) removed outlier: 3.671A pdb=" N LYS 9 253 " --> pdb=" O LEU 9 249 " (cutoff:3.500A) removed outlier: 3.845A pdb=" N ASN 9 254 " --> pdb=" O GLU 9 250 " (cutoff:3.500A) removed outlier: 5.367A pdb=" N LYS 9 264 " --> pdb=" O GLU 9 260 " (cutoff:3.500A) removed outlier: 4.904A pdb=" N MET 9 265 " --> pdb=" O GLU 9 261 " (cutoff:3.500A) removed outlier: 5.280A pdb=" N THR 9 266 " --> pdb=" O GLU 9 262 " (cutoff:3.500A) Processing helix chain '9' and resid 267 through 277 removed outlier: 3.870A pdb=" N ILE 9 272 " --> pdb=" O GLU 9 268 " (cutoff:3.500A) removed outlier: 3.978A pdb=" N GLY 9 276 " --> pdb=" O ILE 9 272 " (cutoff:3.500A) Processing helix chain '9' and resid 279 through 308 removed outlier: 4.333A pdb=" N HIS 9 283 " --> pdb=" O ASP 9 279 " (cutoff:3.500A) removed outlier: 3.775A pdb=" N VAL 9 290 " --> pdb=" O GLU 9 286 " (cutoff:3.500A) removed outlier: 3.555A pdb=" N LEU 9 291 " --> pdb=" O HIS 9 287 " (cutoff:3.500A) removed outlier: 3.624A pdb=" N VAL 9 307 " --> pdb=" O MET 9 303 " (cutoff:3.500A) Processing helix chain 'W' and resid 13 through 19 removed outlier: 4.617A pdb=" N ASN W 18 " --> pdb=" O GLU W 14 " (cutoff:3.500A) removed outlier: 4.491A pdb=" N GLY W 19 " --> pdb=" O TYR W 15 " (cutoff:3.500A) Processing helix chain 'W' and resid 24 through 45 removed outlier: 3.700A pdb=" N ASP W 31 " --> pdb=" O GLN W 27 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ALA W 32 " --> pdb=" O ALA W 28 " (cutoff:3.500A) Proline residue: W 45 - end of helix Processing helix chain 'W' and resid 68 through 76 removed outlier: 4.467A pdb=" N HIS W 76 " --> pdb=" O LEU W 72 " (cutoff:3.500A) Processing helix chain 'W' and resid 85 through 100 Processing helix chain 'W' and resid 120 through 135 Processing helix chain 'W' and resid 151 through 160 removed outlier: 3.517A pdb=" N ASN W 158 " --> pdb=" O THR W 154 " (cutoff:3.500A) Processing helix chain 'W' and resid 178 through 187 removed outlier: 3.919A pdb=" N SER W 185 " --> pdb=" O ASP W 181 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N SER W 186 " --> pdb=" O ALA W 182 " (cutoff:3.500A) Proline residue: W 187 - end of helix Processing helix chain 'AA' and resid 13 through 19 removed outlier: 4.617A pdb=" N ASNAA 18 " --> pdb=" O GLUAA 14 " (cutoff:3.500A) removed outlier: 4.491A pdb=" N GLYAA 19 " --> pdb=" O TYRAA 15 " (cutoff:3.500A) Processing helix chain 'AA' and resid 24 through 45 removed outlier: 3.700A pdb=" N ASPAA 31 " --> pdb=" O GLNAA 27 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N ALAAA 32 " --> pdb=" O ALAAA 28 " (cutoff:3.500A) Proline residue: AA 45 - end of helix Processing helix chain 'AA' and resid 68 through 76 removed outlier: 4.467A pdb=" N HISAA 76 " --> pdb=" O LEUAA 72 " (cutoff:3.500A) Processing helix chain 'AA' and resid 85 through 100 Processing helix chain 'AA' and resid 120 through 135 Processing helix chain 'AA' and resid 151 through 160 removed outlier: 3.517A pdb=" N ASNAA 158 " --> pdb=" O THRAA 154 " (cutoff:3.500A) Processing helix chain 'AA' and resid 178 through 187 removed outlier: 3.919A pdb=" N SERAA 185 " --> pdb=" O ASPAA 181 " (cutoff:3.500A) removed outlier: 3.825A pdb=" N SERAA 186 " --> pdb=" O ALAAA 182 " (cutoff:3.500A) Proline residue: AA 187 - end of helix Processing helix chain 'Y' and resid 3 through 15 Proline residue: Y 7 - end of helix Processing helix chain 'Y' and resid 18 through 27 Proline residue: Y 23 - end of helix Processing helix chain 'Y' and resid 50 through 68 Processing helix chain 'AB' and resid 3 through 15 Proline residue: AB 7 - end of helix Processing helix chain 'AB' and resid 18 through 27 Proline residue: AB 23 - end of helix Processing helix chain 'AB' and resid 50 through 68 Processing helix chain 'Z' and resid 106 through 112 removed outlier: 4.442A pdb=" N TYR Z 110 " --> pdb=" O LEU Z 106 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N GLU Z 111 " --> pdb=" O LYS Z 107 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N ASN Z 112 " --> pdb=" O GLU Z 108 " (cutoff:3.500A) No H-bonds generated for 'chain 'Z' and resid 106 through 112' Processing helix chain 'Z' and resid 119 through 134 removed outlier: 3.931A pdb=" N SER Z 127 " --> pdb=" O ALA Z 123 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N MET Z 133 " --> pdb=" O LEU Z 129 " (cutoff:3.500A) Processing helix chain 'Z' and resid 135 through 146 removed outlier: 4.894A pdb=" N CYS Z 139 " --> pdb=" O GLY Z 135 " (cutoff:3.500A) removed outlier: 4.357A pdb=" N LEU Z 140 " --> pdb=" O GLU Z 136 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N VAL Z 145 " --> pdb=" O LYS Z 141 " (cutoff:3.500A) Processing helix chain 'Z' and resid 156 through 170 removed outlier: 4.165A pdb=" N ARG Z 160 " --> pdb=" O HIS Z 156 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N GLY Z 164 " --> pdb=" O ARG Z 160 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N VAL Z 166 " --> pdb=" O LEU Z 162 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N GLU Z 169 " --> pdb=" O GLU Z 165 " (cutoff:3.500A) Processing helix chain 'Z' and resid 181 through 199 removed outlier: 3.684A pdb=" N ILE Z 191 " --> pdb=" O LEU Z 187 " (cutoff:3.500A) Proline residue: Z 193 - end of helix removed outlier: 3.519A pdb=" N HIS Z 198 " --> pdb=" O TYR Z 194 " (cutoff:3.500A) Processing helix chain 'Z' and resid 202 through 212 removed outlier: 6.746A pdb=" N ASP Z 206 " --> pdb=" O HIS Z 202 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ILE Z 211 " --> pdb=" O LEU Z 207 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N GLU Z 212 " --> pdb=" O LEU Z 208 " (cutoff:3.500A) Processing helix chain 'Z' and resid 213 through 220 removed outlier: 3.714A pdb=" N LEU Z 217 " --> pdb=" O GLN Z 213 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N GLU Z 218 " --> pdb=" O VAL Z 214 " (cutoff:3.500A) Processing helix chain 'Z' and resid 227 through 239 removed outlier: 3.618A pdb=" N LEU Z 231 " --> pdb=" O ALA Z 227 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N SER Z 235 " --> pdb=" O LEU Z 231 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N CYS Z 236 " --> pdb=" O TYR Z 232 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ASN Z 238 " --> pdb=" O THR Z 234 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N TYR Z 239 " --> pdb=" O SER Z 235 " (cutoff:3.500A) Processing helix chain 'Z' and resid 246 through 256 removed outlier: 5.294A pdb=" N LEU Z 253 " --> pdb=" O LEU Z 249 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N VAL Z 255 " --> pdb=" O CYS Z 251 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N PHE Z 256 " --> pdb=" O ALA Z 252 " (cutoff:3.500A) Processing helix chain 'Z' and resid 257 through 262 removed outlier: 6.660A pdb=" N ARG Z 261 " --> pdb=" O ARG Z 257 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N PHE Z 262 " --> pdb=" O LYS Z 258 " (cutoff:3.500A) No H-bonds generated for 'chain 'Z' and resid 257 through 262' Processing helix chain 'Z' and resid 263 through 272 removed outlier: 3.752A pdb=" N ARG Z 267 " --> pdb=" O PRO Z 263 " (cutoff:3.500A) removed outlier: 4.600A pdb=" N MET Z 271 " --> pdb=" O ARG Z 267 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N LEU Z 272 " --> pdb=" O LEU Z 268 " (cutoff:3.500A) Processing helix chain 'Z' and resid 275 through 285 removed outlier: 4.478A pdb=" N GLU Z 279 " --> pdb=" O MET Z 275 " (cutoff:3.500A) removed outlier: 4.461A pdb=" N ASP Z 280 " --> pdb=" O GLU Z 276 " (cutoff:3.500A) Processing helix chain 'Z' and resid 287 through 301 removed outlier: 3.541A pdb=" N HIS Z 301 " --> pdb=" O MET Z 297 " (cutoff:3.500A) Processing helix chain 'Z' and resid 314 through 319 removed outlier: 3.832A pdb=" N THR Z 318 " --> pdb=" O TYR Z 314 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N GLU Z 319 " --> pdb=" O GLU Z 315 " (cutoff:3.500A) No H-bonds generated for 'chain 'Z' and resid 314 through 319' Processing helix chain 'Z' and resid 333 through 340 removed outlier: 4.185A pdb=" N LEU Z 337 " --> pdb=" O LEU Z 333 " (cutoff:3.500A) removed outlier: 4.995A pdb=" N ASP Z 338 " --> pdb=" O ALA Z 334 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N ILE Z 339 " --> pdb=" O ARG Z 335 " (cutoff:3.500A) Processing helix chain 'Z' and resid 342 through 357 removed outlier: 6.682A pdb=" N ASP Z 346 " --> pdb=" O PRO Z 342 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N ASP Z 347 " --> pdb=" O LYS Z 343 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N HIS Z 352 " --> pdb=" O ILE Z 348 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ARG Z 357 " --> pdb=" O LEU Z 353 " (cutoff:3.500A) Processing helix chain 'Z' and resid 368 through 383 removed outlier: 4.314A pdb=" N ALA Z 373 " --> pdb=" O ARG Z 369 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N PHE Z 376 " --> pdb=" O LEU Z 372 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N ASN Z 378 " --> pdb=" O SER Z 374 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N GLY Z 379 " --> pdb=" O SER Z 375 " (cutoff:3.500A) Processing helix chain 'Z' and resid 387 through 393 removed outlier: 4.405A pdb=" N LEU Z 391 " --> pdb=" O GLN Z 387 " (cutoff:3.500A) Processing helix chain 'Z' and resid 398 through 403 removed outlier: 3.660A pdb=" N ASN Z 402 " --> pdb=" O TRP Z 398 " (cutoff:3.500A) removed outlier: 5.058A pdb=" N LYS Z 403 " --> pdb=" O LEU Z 399 " (cutoff:3.500A) No H-bonds generated for 'chain 'Z' and resid 398 through 403' Processing helix chain 'Z' and resid 404 through 419 removed outlier: 3.826A pdb=" N LEU Z 408 " --> pdb=" O ASP Z 404 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LEU Z 414 " --> pdb=" O ALA Z 410 " (cutoff:3.500A) Processing helix chain 'Z' and resid 427 through 435 removed outlier: 3.530A pdb=" N TYR Z 434 " --> pdb=" O ASP Z 430 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N SER Z 435 " --> pdb=" O LYS Z 431 " (cutoff:3.500A) Processing helix chain 'Z' and resid 437 through 453 removed outlier: 4.024A pdb=" N ALA Z 444 " --> pdb=" O ILE Z 440 " (cutoff:3.500A) Processing helix chain 'Z' and resid 461 through 471 removed outlier: 3.631A pdb=" N LEU Z 465 " --> pdb=" O PRO Z 461 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N SER Z 467 " --> pdb=" O LEU Z 463 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N ASP Z 468 " --> pdb=" O ALA Z 464 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N TYR Z 469 " --> pdb=" O LEU Z 465 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N LEU Z 471 " --> pdb=" O SER Z 467 " (cutoff:3.500A) Processing helix chain 'Z' and resid 475 through 492 removed outlier: 6.034A pdb=" N GLY Z 491 " --> pdb=" O LEU Z 487 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N SER Z 492 " --> pdb=" O ALA Z 488 " (cutoff:3.500A) Processing helix chain 'Z' and resid 494 through 508 removed outlier: 4.002A pdb=" N LEU Z 498 " --> pdb=" O ARG Z 494 " (cutoff:3.500A) Proline residue: Z 503 - end of helix Processing helix chain 'Z' and resid 515 through 527 removed outlier: 3.902A pdb=" N LEU Z 520 " --> pdb=" O GLY Z 516 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N ALA Z 526 " --> pdb=" O CYS Z 522 " (cutoff:3.500A) removed outlier: 4.506A pdb=" N VAL Z 527 " --> pdb=" O GLY Z 523 " (cutoff:3.500A) Processing helix chain 'Z' and resid 531 through 545 removed outlier: 3.676A pdb=" N LEU Z 539 " --> pdb=" O THR Z 535 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N MET Z 543 " --> pdb=" O LEU Z 539 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N GLU Z 544 " --> pdb=" O GLN Z 540 " (cutoff:3.500A) Processing helix chain 'Z' and resid 551 through 567 removed outlier: 3.601A pdb=" N ALA Z 555 " --> pdb=" O LYS Z 551 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N LEU Z 558 " --> pdb=" O TYR Z 554 " (cutoff:3.500A) Proline residue: Z 559 - end of helix removed outlier: 4.059A pdb=" N ASN Z 565 " --> pdb=" O GLY Z 561 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N HIS Z 566 " --> pdb=" O LEU Z 562 " (cutoff:3.500A) removed outlier: 5.173A pdb=" N LEU Z 567 " --> pdb=" O GLY Z 563 " (cutoff:3.500A) Processing helix chain 'Z' and resid 573 through 581 removed outlier: 4.736A pdb=" N LEU Z 577 " --> pdb=" O ILE Z 573 " (cutoff:3.500A) removed outlier: 4.493A pdb=" N ALA Z 578 " --> pdb=" O GLU Z 574 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N ALA Z 579 " --> pdb=" O ALA Z 575 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N LEU Z 580 " --> pdb=" O ILE Z 576 " (cutoff:3.500A) Processing helix chain 'Z' and resid 585 through 595 removed outlier: 4.365A pdb=" N SER Z 589 " --> pdb=" O GLU Z 585 " (cutoff:3.500A) removed outlier: 5.229A pdb=" N PHE Z 590 " --> pdb=" O PRO Z 586 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N ALA Z 591 " --> pdb=" O PHE Z 587 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N THR Z 593 " --> pdb=" O SER Z 589 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N LEU Z 594 " --> pdb=" O PHE Z 590 " (cutoff:3.500A) Processing helix chain 'Z' and resid 604 through 618 removed outlier: 3.867A pdb=" N VAL Z 609 " --> pdb=" O ASN Z 605 " (cutoff:3.500A) removed outlier: 3.931A pdb=" N GLN Z 610 " --> pdb=" O VAL Z 606 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N GLN Z 611 " --> pdb=" O LEU Z 607 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SER Z 617 " --> pdb=" O LEU Z 613 " (cutoff:3.500A) Processing helix chain 'Z' and resid 655 through 664 removed outlier: 3.710A pdb=" N LEU Z 659 " --> pdb=" O LEU Z 655 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N ILE Z 660 " --> pdb=" O GLY Z 656 " (cutoff:3.500A) removed outlier: 3.990A pdb=" N MET Z 662 " --> pdb=" O ALA Z 658 " (cutoff:3.500A) removed outlier: 4.086A pdb=" N GLY Z 663 " --> pdb=" O LEU Z 659 " (cutoff:3.500A) removed outlier: 4.318A pdb=" N GLU Z 664 " --> pdb=" O ILE Z 660 " (cutoff:3.500A) Processing helix chain 'Z' and resid 665 through 670 removed outlier: 3.707A pdb=" N GLU Z 669 " --> pdb=" O GLU Z 665 " (cutoff:3.500A) Processing helix chain 'Z' and resid 671 through 681 removed outlier: 4.575A pdb=" N GLY Z 676 " --> pdb=" O LEU Z 672 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N HIS Z 677 " --> pdb=" O ARG Z 673 " (cutoff:3.500A) Processing helix chain 'Z' and resid 683 through 698 Proline residue: Z 691 - end of helix removed outlier: 4.036A pdb=" N ALA Z 695 " --> pdb=" O PRO Z 691 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N LEU Z 696 " --> pdb=" O LEU Z 692 " (cutoff:3.500A) removed outlier: 4.003A pdb=" N ILE Z 697 " --> pdb=" O ALA Z 693 " (cutoff:3.500A) Processing helix chain 'Z' and resid 703 through 717 removed outlier: 4.717A pdb=" N LEU Z 707 " --> pdb=" O ARG Z 703 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N THR Z 709 " --> pdb=" O ASN Z 705 " (cutoff:3.500A) removed outlier: 3.996A pdb=" N SER Z 711 " --> pdb=" O LEU Z 707 " (cutoff:3.500A) removed outlier: 4.708A pdb=" N HIS Z 715 " --> pdb=" O SER Z 711 " (cutoff:3.500A) removed outlier: 4.102A pdb=" N ASP Z 716 " --> pdb=" O LYS Z 712 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N ALA Z 717 " --> pdb=" O PHE Z 713 " (cutoff:3.500A) Processing helix chain 'Z' and resid 718 through 736 removed outlier: 3.893A pdb=" N SER Z 722 " --> pdb=" O ASP Z 718 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N MET Z 729 " --> pdb=" O SER Z 725 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N GLY Z 735 " --> pdb=" O MET Z 731 " (cutoff:3.500A) Processing helix chain 'Z' and resid 741 through 752 removed outlier: 4.026A pdb=" N GLN Z 747 " --> pdb=" O ALA Z 743 " (cutoff:3.500A) removed outlier: 4.609A pdb=" N HIS Z 752 " --> pdb=" O LEU Z 748 " (cutoff:3.500A) Processing helix chain 'Z' and resid 755 through 771 Processing helix chain 'Z' and resid 789 through 810 removed outlier: 3.684A pdb=" N VAL Z 793 " --> pdb=" O SER Z 789 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLY Z 795 " --> pdb=" O VAL Z 791 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEU Z 796 " --> pdb=" O ALA Z 792 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N LEU Z 797 " --> pdb=" O VAL Z 793 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N THR Z 798 " --> pdb=" O ALA Z 794 " (cutoff:3.500A) removed outlier: 4.151A pdb=" N VAL Z 799 " --> pdb=" O GLY Z 795 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N VAL Z 806 " --> pdb=" O SER Z 802 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ARG Z 807 " --> pdb=" O PHE Z 803 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N ILE Z 809 " --> pdb=" O ASP Z 805 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N ILE Z 810 " --> pdb=" O VAL Z 806 " (cutoff:3.500A) Processing helix chain 'Z' and resid 815 through 824 removed outlier: 4.114A pdb=" N LEU Z 818 " --> pdb=" O HIS Z 815 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N TYR Z 819 " --> pdb=" O TYR Z 816 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N GLY Z 820 " --> pdb=" O VAL Z 817 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N LEU Z 821 " --> pdb=" O LEU Z 818 " (cutoff:3.500A) removed outlier: 4.000A pdb=" N ALA Z 823 " --> pdb=" O GLY Z 820 " (cutoff:3.500A) Processing helix chain 'Z' and resid 509 through 514 Processing helix chain 'AC' and resid 106 through 112 removed outlier: 4.442A pdb=" N TYRAC 110 " --> pdb=" O LEUAC 106 " (cutoff:3.500A) removed outlier: 3.649A pdb=" N GLUAC 111 " --> pdb=" O LYSAC 107 " (cutoff:3.500A) removed outlier: 4.794A pdb=" N ASNAC 112 " --> pdb=" O GLUAC 108 " (cutoff:3.500A) No H-bonds generated for 'chain 'AC' and resid 106 through 112' Processing helix chain 'AC' and resid 119 through 134 removed outlier: 3.931A pdb=" N SERAC 127 " --> pdb=" O ALAAC 123 " (cutoff:3.500A) removed outlier: 3.584A pdb=" N METAC 133 " --> pdb=" O LEUAC 129 " (cutoff:3.500A) Processing helix chain 'AC' and resid 135 through 146 removed outlier: 4.894A pdb=" N CYSAC 139 " --> pdb=" O GLYAC 135 " (cutoff:3.500A) removed outlier: 4.357A pdb=" N LEUAC 140 " --> pdb=" O GLUAC 136 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N VALAC 145 " --> pdb=" O LYSAC 141 " (cutoff:3.500A) Processing helix chain 'AC' and resid 156 through 170 removed outlier: 4.165A pdb=" N ARGAC 160 " --> pdb=" O HISAC 156 " (cutoff:3.500A) removed outlier: 3.761A pdb=" N GLYAC 164 " --> pdb=" O ARGAC 160 " (cutoff:3.500A) removed outlier: 3.547A pdb=" N VALAC 166 " --> pdb=" O LEUAC 162 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N GLUAC 169 " --> pdb=" O GLUAC 165 " (cutoff:3.500A) Processing helix chain 'AC' and resid 181 through 199 removed outlier: 3.684A pdb=" N ILEAC 191 " --> pdb=" O LEUAC 187 " (cutoff:3.500A) Proline residue: AC 193 - end of helix removed outlier: 3.519A pdb=" N HISAC 198 " --> pdb=" O TYRAC 194 " (cutoff:3.500A) Processing helix chain 'AC' and resid 202 through 212 removed outlier: 6.746A pdb=" N ASPAC 206 " --> pdb=" O HISAC 202 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ILEAC 211 " --> pdb=" O LEUAC 207 " (cutoff:3.500A) removed outlier: 3.951A pdb=" N GLUAC 212 " --> pdb=" O LEUAC 208 " (cutoff:3.500A) Processing helix chain 'AC' and resid 213 through 220 removed outlier: 3.714A pdb=" N LEUAC 217 " --> pdb=" O GLNAC 213 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N GLUAC 218 " --> pdb=" O VALAC 214 " (cutoff:3.500A) Processing helix chain 'AC' and resid 227 through 239 removed outlier: 3.618A pdb=" N LEUAC 231 " --> pdb=" O ALAAC 227 " (cutoff:3.500A) removed outlier: 4.045A pdb=" N SERAC 235 " --> pdb=" O LEUAC 231 " (cutoff:3.500A) removed outlier: 3.923A pdb=" N CYSAC 236 " --> pdb=" O TYRAC 232 " (cutoff:3.500A) removed outlier: 3.618A pdb=" N ASNAC 238 " --> pdb=" O THRAC 234 " (cutoff:3.500A) removed outlier: 3.723A pdb=" N TYRAC 239 " --> pdb=" O SERAC 235 " (cutoff:3.500A) Processing helix chain 'AC' and resid 246 through 256 removed outlier: 5.294A pdb=" N LEUAC 253 " --> pdb=" O LEUAC 249 " (cutoff:3.500A) removed outlier: 4.304A pdb=" N VALAC 255 " --> pdb=" O CYSAC 251 " (cutoff:3.500A) removed outlier: 3.875A pdb=" N PHEAC 256 " --> pdb=" O ALAAC 252 " (cutoff:3.500A) Processing helix chain 'AC' and resid 257 through 262 removed outlier: 6.660A pdb=" N ARGAC 261 " --> pdb=" O ARGAC 257 " (cutoff:3.500A) removed outlier: 4.111A pdb=" N PHEAC 262 " --> pdb=" O LYSAC 258 " (cutoff:3.500A) No H-bonds generated for 'chain 'AC' and resid 257 through 262' Processing helix chain 'AC' and resid 263 through 272 removed outlier: 3.752A pdb=" N ARGAC 267 " --> pdb=" O PROAC 263 " (cutoff:3.500A) removed outlier: 4.600A pdb=" N METAC 271 " --> pdb=" O ARGAC 267 " (cutoff:3.500A) removed outlier: 4.971A pdb=" N LEUAC 272 " --> pdb=" O LEUAC 268 " (cutoff:3.500A) Processing helix chain 'AC' and resid 275 through 285 removed outlier: 4.478A pdb=" N GLUAC 279 " --> pdb=" O METAC 275 " (cutoff:3.500A) removed outlier: 4.461A pdb=" N ASPAC 280 " --> pdb=" O GLUAC 276 " (cutoff:3.500A) Processing helix chain 'AC' and resid 287 through 301 removed outlier: 3.541A pdb=" N HISAC 301 " --> pdb=" O METAC 297 " (cutoff:3.500A) Processing helix chain 'AC' and resid 314 through 319 removed outlier: 3.832A pdb=" N THRAC 318 " --> pdb=" O TYRAC 314 " (cutoff:3.500A) removed outlier: 3.513A pdb=" N GLUAC 319 " --> pdb=" O GLUAC 315 " (cutoff:3.500A) No H-bonds generated for 'chain 'AC' and resid 314 through 319' Processing helix chain 'AC' and resid 333 through 340 removed outlier: 4.185A pdb=" N LEUAC 337 " --> pdb=" O LEUAC 333 " (cutoff:3.500A) removed outlier: 4.995A pdb=" N ASPAC 338 " --> pdb=" O ALAAC 334 " (cutoff:3.500A) removed outlier: 3.791A pdb=" N ILEAC 339 " --> pdb=" O ARGAC 335 " (cutoff:3.500A) Processing helix chain 'AC' and resid 342 through 357 removed outlier: 6.682A pdb=" N ASPAC 346 " --> pdb=" O PROAC 342 " (cutoff:3.500A) removed outlier: 4.059A pdb=" N ASPAC 347 " --> pdb=" O LYSAC 343 " (cutoff:3.500A) removed outlier: 3.655A pdb=" N HISAC 352 " --> pdb=" O ILEAC 348 " (cutoff:3.500A) removed outlier: 3.849A pdb=" N ARGAC 357 " --> pdb=" O LEUAC 353 " (cutoff:3.500A) Processing helix chain 'AC' and resid 368 through 383 removed outlier: 4.314A pdb=" N ALAAC 373 " --> pdb=" O ARGAC 369 " (cutoff:3.500A) removed outlier: 3.594A pdb=" N PHEAC 376 " --> pdb=" O LEUAC 372 " (cutoff:3.500A) removed outlier: 3.546A pdb=" N ASNAC 378 " --> pdb=" O SERAC 374 " (cutoff:3.500A) removed outlier: 3.744A pdb=" N GLYAC 379 " --> pdb=" O SERAC 375 " (cutoff:3.500A) Processing helix chain 'AC' and resid 387 through 393 removed outlier: 4.405A pdb=" N LEUAC 391 " --> pdb=" O GLNAC 387 " (cutoff:3.500A) Processing helix chain 'AC' and resid 398 through 403 removed outlier: 3.660A pdb=" N ASNAC 402 " --> pdb=" O TRPAC 398 " (cutoff:3.500A) removed outlier: 5.058A pdb=" N LYSAC 403 " --> pdb=" O LEUAC 399 " (cutoff:3.500A) No H-bonds generated for 'chain 'AC' and resid 398 through 403' Processing helix chain 'AC' and resid 404 through 419 removed outlier: 3.826A pdb=" N LEUAC 408 " --> pdb=" O ASPAC 404 " (cutoff:3.500A) removed outlier: 3.611A pdb=" N LEUAC 414 " --> pdb=" O ALAAC 410 " (cutoff:3.500A) Processing helix chain 'AC' and resid 427 through 435 removed outlier: 3.530A pdb=" N TYRAC 434 " --> pdb=" O ASPAC 430 " (cutoff:3.500A) removed outlier: 4.189A pdb=" N SERAC 435 " --> pdb=" O LYSAC 431 " (cutoff:3.500A) Processing helix chain 'AC' and resid 437 through 453 removed outlier: 4.024A pdb=" N ALAAC 444 " --> pdb=" O ILEAC 440 " (cutoff:3.500A) Processing helix chain 'AC' and resid 461 through 471 removed outlier: 3.631A pdb=" N LEUAC 465 " --> pdb=" O PROAC 461 " (cutoff:3.500A) removed outlier: 3.921A pdb=" N SERAC 467 " --> pdb=" O LEUAC 463 " (cutoff:3.500A) removed outlier: 4.194A pdb=" N ASPAC 468 " --> pdb=" O ALAAC 464 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N TYRAC 469 " --> pdb=" O LEUAC 465 " (cutoff:3.500A) removed outlier: 4.460A pdb=" N LEUAC 471 " --> pdb=" O SERAC 467 " (cutoff:3.500A) Processing helix chain 'AC' and resid 475 through 492 removed outlier: 6.034A pdb=" N GLYAC 491 " --> pdb=" O LEUAC 487 " (cutoff:3.500A) removed outlier: 3.749A pdb=" N SERAC 492 " --> pdb=" O ALAAC 488 " (cutoff:3.500A) Processing helix chain 'AC' and resid 494 through 508 removed outlier: 4.002A pdb=" N LEUAC 498 " --> pdb=" O ARGAC 494 " (cutoff:3.500A) Proline residue: AC 503 - end of helix Processing helix chain 'AC' and resid 515 through 527 removed outlier: 3.902A pdb=" N LEUAC 520 " --> pdb=" O GLYAC 516 " (cutoff:3.500A) removed outlier: 4.092A pdb=" N ALAAC 526 " --> pdb=" O CYSAC 522 " (cutoff:3.500A) removed outlier: 4.506A pdb=" N VALAC 527 " --> pdb=" O GLYAC 523 " (cutoff:3.500A) Processing helix chain 'AC' and resid 531 through 545 removed outlier: 3.676A pdb=" N LEUAC 539 " --> pdb=" O THRAC 535 " (cutoff:3.500A) removed outlier: 3.989A pdb=" N METAC 543 " --> pdb=" O LEUAC 539 " (cutoff:3.500A) removed outlier: 4.264A pdb=" N GLUAC 544 " --> pdb=" O GLNAC 540 " (cutoff:3.500A) Processing helix chain 'AC' and resid 551 through 567 removed outlier: 3.601A pdb=" N ALAAC 555 " --> pdb=" O LYSAC 551 " (cutoff:3.500A) removed outlier: 3.826A pdb=" N LEUAC 558 " --> pdb=" O TYRAC 554 " (cutoff:3.500A) Proline residue: AC 559 - end of helix removed outlier: 4.059A pdb=" N ASNAC 565 " --> pdb=" O GLYAC 561 " (cutoff:3.500A) removed outlier: 3.827A pdb=" N HISAC 566 " --> pdb=" O LEUAC 562 " (cutoff:3.500A) removed outlier: 5.173A pdb=" N LEUAC 567 " --> pdb=" O GLYAC 563 " (cutoff:3.500A) Processing helix chain 'AC' and resid 573 through 581 removed outlier: 4.736A pdb=" N LEUAC 577 " --> pdb=" O ILEAC 573 " (cutoff:3.500A) removed outlier: 4.493A pdb=" N ALAAC 578 " --> pdb=" O GLUAC 574 " (cutoff:3.500A) removed outlier: 4.195A pdb=" N ALAAC 579 " --> pdb=" O ALAAC 575 " (cutoff:3.500A) removed outlier: 3.500A pdb=" N LEUAC 580 " --> pdb=" O ILEAC 576 " (cutoff:3.500A) Processing helix chain 'AC' and resid 585 through 595 removed outlier: 4.365A pdb=" N SERAC 589 " --> pdb=" O GLUAC 585 " (cutoff:3.500A) removed outlier: 5.229A pdb=" N PHEAC 590 " --> pdb=" O PROAC 586 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N ALAAC 591 " --> pdb=" O PHEAC 587 " (cutoff:3.500A) removed outlier: 4.815A pdb=" N THRAC 593 " --> pdb=" O SERAC 589 " (cutoff:3.500A) removed outlier: 3.778A pdb=" N LEUAC 594 " --> pdb=" O PHEAC 590 " (cutoff:3.500A) Processing helix chain 'AC' and resid 604 through 618 removed outlier: 3.867A pdb=" N VALAC 609 " --> pdb=" O ASNAC 605 " (cutoff:3.500A) removed outlier: 3.931A pdb=" N GLNAC 610 " --> pdb=" O VALAC 606 " (cutoff:3.500A) removed outlier: 3.940A pdb=" N GLNAC 611 " --> pdb=" O LEUAC 607 " (cutoff:3.500A) removed outlier: 3.600A pdb=" N SERAC 617 " --> pdb=" O LEUAC 613 " (cutoff:3.500A) Processing helix chain 'AC' and resid 655 through 664 removed outlier: 3.710A pdb=" N LEUAC 659 " --> pdb=" O LEUAC 655 " (cutoff:3.500A) removed outlier: 4.093A pdb=" N ILEAC 660 " --> pdb=" O GLYAC 656 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N METAC 662 " --> pdb=" O ALAAC 658 " (cutoff:3.500A) removed outlier: 5.108A pdb=" N GLYAC 663 " --> pdb=" O LEUAC 659 " (cutoff:3.500A) removed outlier: 5.164A pdb=" N GLUAC 664 " --> pdb=" O ILEAC 660 " (cutoff:3.500A) Processing helix chain 'AC' and resid 665 through 670 removed outlier: 5.929A pdb=" N GLUAC 669 " --> pdb=" O GLUAC 665 " (cutoff:3.500A) Processing helix chain 'AC' and resid 671 through 681 removed outlier: 4.575A pdb=" N GLYAC 676 " --> pdb=" O LEUAC 672 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N HISAC 677 " --> pdb=" O ARGAC 673 " (cutoff:3.500A) Processing helix chain 'AC' and resid 683 through 698 Proline residue: AC 691 - end of helix removed outlier: 4.036A pdb=" N ALAAC 695 " --> pdb=" O PROAC 691 " (cutoff:3.500A) removed outlier: 4.797A pdb=" N LEUAC 696 " --> pdb=" O LEUAC 692 " (cutoff:3.500A) removed outlier: 4.003A pdb=" N ILEAC 697 " --> pdb=" O ALAAC 693 " (cutoff:3.500A) Processing helix chain 'AC' and resid 703 through 717 removed outlier: 4.717A pdb=" N LEUAC 707 " --> pdb=" O ARGAC 703 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N THRAC 709 " --> pdb=" O ASNAC 705 " (cutoff:3.500A) removed outlier: 3.996A pdb=" N SERAC 711 " --> pdb=" O LEUAC 707 " (cutoff:3.500A) removed outlier: 4.708A pdb=" N HISAC 715 " --> pdb=" O SERAC 711 " (cutoff:3.500A) removed outlier: 4.102A pdb=" N ASPAC 716 " --> pdb=" O LYSAC 712 " (cutoff:3.500A) removed outlier: 4.580A pdb=" N ALAAC 717 " --> pdb=" O PHEAC 713 " (cutoff:3.500A) Processing helix chain 'AC' and resid 718 through 736 removed outlier: 3.893A pdb=" N SERAC 722 " --> pdb=" O ASPAC 718 " (cutoff:3.500A) removed outlier: 3.623A pdb=" N METAC 729 " --> pdb=" O SERAC 725 " (cutoff:3.500A) removed outlier: 4.343A pdb=" N GLYAC 735 " --> pdb=" O METAC 731 " (cutoff:3.500A) Processing helix chain 'AC' and resid 741 through 752 removed outlier: 4.026A pdb=" N GLNAC 747 " --> pdb=" O ALAAC 743 " (cutoff:3.500A) removed outlier: 4.609A pdb=" N HISAC 752 " --> pdb=" O LEUAC 748 " (cutoff:3.500A) Processing helix chain 'AC' and resid 755 through 771 Processing helix chain 'AC' and resid 789 through 810 removed outlier: 3.684A pdb=" N VALAC 793 " --> pdb=" O SERAC 789 " (cutoff:3.500A) removed outlier: 3.507A pdb=" N GLYAC 795 " --> pdb=" O VALAC 791 " (cutoff:3.500A) removed outlier: 3.517A pdb=" N LEUAC 796 " --> pdb=" O ALAAC 792 " (cutoff:3.500A) removed outlier: 4.446A pdb=" N LEUAC 797 " --> pdb=" O VALAC 793 " (cutoff:3.500A) removed outlier: 4.341A pdb=" N THRAC 798 " --> pdb=" O ALAAC 794 " (cutoff:3.500A) removed outlier: 4.151A pdb=" N VALAC 799 " --> pdb=" O GLYAC 795 " (cutoff:3.500A) removed outlier: 3.690A pdb=" N VALAC 806 " --> pdb=" O SERAC 802 " (cutoff:3.500A) removed outlier: 3.706A pdb=" N ARGAC 807 " --> pdb=" O PHEAC 803 " (cutoff:3.500A) removed outlier: 3.629A pdb=" N ILEAC 809 " --> pdb=" O ASPAC 805 " (cutoff:3.500A) removed outlier: 4.211A pdb=" N ILEAC 810 " --> pdb=" O VALAC 806 " (cutoff:3.500A) Processing helix chain 'AC' and resid 815 through 824 removed outlier: 4.114A pdb=" N LEUAC 818 " --> pdb=" O HISAC 815 " (cutoff:3.500A) removed outlier: 4.474A pdb=" N TYRAC 819 " --> pdb=" O TYRAC 816 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N GLYAC 820 " --> pdb=" O VALAC 817 " (cutoff:3.500A) removed outlier: 4.630A pdb=" N LEUAC 821 " --> pdb=" O LEUAC 818 " (cutoff:3.500A) removed outlier: 4.000A pdb=" N ALAAC 823 " --> pdb=" O GLYAC 820 " (cutoff:3.500A) Processing helix chain 'AC' and resid 509 through 514 Processing helix chain 'B' and resid 22 through 35 removed outlier: 3.994A pdb=" N ASN B 33 " --> pdb=" O PHE B 29 " (cutoff:3.500A) removed outlier: 3.772A pdb=" N GLN B 34 " --> pdb=" O LYS B 30 " (cutoff:3.500A) removed outlier: 4.548A pdb=" N GLY B 35 " --> pdb=" O ALA B 31 " (cutoff:3.500A) Processing helix chain 'B' and resid 62 through 67 removed outlier: 3.629A pdb=" N VAL B 66 " --> pdb=" O ASP B 62 " (cutoff:3.500A) removed outlier: 4.849A pdb=" N THR B 67 " --> pdb=" O SER B 63 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 62 through 67' Processing helix chain 'B' and resid 83 through 105 Processing helix chain 'B' and resid 110 through 129 removed outlier: 3.663A pdb=" N VAL B 124 " --> pdb=" O ASP B 120 " (cutoff:3.500A) removed outlier: 3.677A pdb=" N TYR B 125 " --> pdb=" O ILE B 121 " (cutoff:3.500A) removed outlier: 5.494A pdb=" N ALA B 129 " --> pdb=" O TYR B 125 " (cutoff:3.500A) Processing helix chain 'B' and resid 171 through 186 removed outlier: 3.716A pdb=" N SER B 175 " --> pdb=" O LYS B 171 " (cutoff:3.500A) removed outlier: 3.896A pdb=" N LYS B 184 " --> pdb=" O GLU B 180 " (cutoff:3.500A) removed outlier: 4.068A pdb=" N LYS B 185 " --> pdb=" O LYS B 181 " (cutoff:3.500A) removed outlier: 4.779A pdb=" N LYS B 186 " --> pdb=" O LYS B 182 " (cutoff:3.500A) Processing helix chain 'B' and resid 190 through 207 Processing helix chain 'B' and resid 211 through 216 removed outlier: 4.120A pdb=" N ILE B 215 " --> pdb=" O LYS B 211 " (cutoff:3.500A) removed outlier: 6.049A pdb=" N GLU B 216 " --> pdb=" O PRO B 212 " (cutoff:3.500A) No H-bonds generated for 'chain 'B' and resid 211 through 216' Processing helix chain 'B' and resid 231 through 245 removed outlier: 3.777A pdb=" N ALA B 241 " --> pdb=" O ALA B 237 " (cutoff:3.500A) removed outlier: 3.712A pdb=" N LEU B 242 " --> pdb=" O HIS B 238 " (cutoff:3.500A) removed outlier: 3.782A pdb=" N ALA B 243 " --> pdb=" O LEU B 239 " (cutoff:3.500A) removed outlier: 4.283A pdb=" N GLU B 244 " --> pdb=" O VAL B 240 " (cutoff:3.500A) removed outlier: 4.520A pdb=" N ARG B 245 " --> pdb=" O ALA B 241 " (cutoff:3.500A) Processing helix chain 'h' and resid 22 through 35 removed outlier: 3.958A pdb=" N ASN h 33 " --> pdb=" O PHE h 29 " (cutoff:3.500A) removed outlier: 3.771A pdb=" N GLN h 34 " --> pdb=" O LYS h 30 " (cutoff:3.500A) removed outlier: 4.544A pdb=" N GLY h 35 " --> pdb=" O ALA h 31 " (cutoff:3.500A) Processing helix chain 'h' and resid 62 through 67 removed outlier: 3.843A pdb=" N VAL h 66 " --> pdb=" O ASP h 62 " (cutoff:3.500A) removed outlier: 5.629A pdb=" N THR h 67 " --> pdb=" O SER h 63 " (cutoff:3.500A) No H-bonds generated for 'chain 'h' and resid 62 through 67' Processing helix chain 'h' and resid 83 through 105 Processing helix chain 'h' and resid 110 through 129 removed outlier: 3.646A pdb=" N VAL h 124 " --> pdb=" O ASP h 120 " (cutoff:3.500A) removed outlier: 3.665A pdb=" N TYR h 125 " --> pdb=" O ILE h 121 " (cutoff:3.500A) removed outlier: 5.508A pdb=" N ALA h 129 " --> pdb=" O TYR h 125 " (cutoff:3.500A) Processing helix chain 'h' and resid 171 through 186 removed outlier: 3.904A pdb=" N LYS h 184 " --> pdb=" O GLU h 180 " (cutoff:3.500A) removed outlier: 4.063A pdb=" N LYS h 185 " --> pdb=" O LYS h 181 " (cutoff:3.500A) removed outlier: 4.890A pdb=" N LYS h 186 " --> pdb=" O LYS h 182 " (cutoff:3.500A) Processing helix chain 'h' and resid 190 through 207 Processing helix chain 'h' and resid 211 through 216 removed outlier: 4.114A pdb=" N ILE h 215 " --> pdb=" O LYS h 211 " (cutoff:3.500A) removed outlier: 6.061A pdb=" N GLU h 216 " --> pdb=" O PRO h 212 " (cutoff:3.500A) No H-bonds generated for 'chain 'h' and resid 211 through 216' Processing helix chain 'h' and resid 231 through 245 removed outlier: 3.773A pdb=" N ALA h 241 " --> pdb=" O ALA h 237 " (cutoff:3.500A) removed outlier: 3.710A pdb=" N LEU h 242 " --> pdb=" O HIS h 238 " (cutoff:3.500A) removed outlier: 3.745A pdb=" N ALA h 243 " --> pdb=" O LEU h 239 " (cutoff:3.500A) removed outlier: 4.321A pdb=" N GLU h 244 " --> pdb=" O VAL h 240 " (cutoff:3.500A) removed outlier: 4.619A pdb=" N ARG h 245 " --> pdb=" O ALA h 241 " (cutoff:3.500A) Processing helix chain 'C' and resid 18 through 32 removed outlier: 3.667A pdb=" N GLY C 30 " --> pdb=" O ALA C 26 " (cutoff:3.500A) removed outlier: 3.841A pdb=" N GLY C 31 " --> pdb=" O ALA C 27 " (cutoff:3.500A) removed outlier: 5.562A pdb=" N ALA C 32 " --> pdb=" O VAL C 28 " (cutoff:3.500A) Processing helix chain 'C' and resid 57 through 62 removed outlier: 4.402A pdb=" N VAL C 61 " --> pdb=" O ASP C 57 " (cutoff:3.500A) removed outlier: 5.764A pdb=" N HIS C 62 " --> pdb=" O GLU C 58 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 57 through 62' Processing helix chain 'C' and resid 78 through 101 Processing helix chain 'C' and resid 105 through 123 removed outlier: 3.699A pdb=" N TYR C 120 " --> pdb=" O VAL C 116 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N THR C 121 " --> pdb=" O MET C 117 " (cutoff:3.500A) removed outlier: 3.790A pdb=" N GLN C 122 " --> pdb=" O GLN C 118 " (cutoff:3.500A) Processing helix chain 'C' and resid 165 through 176 Processing helix chain 'C' and resid 182 through 198 removed outlier: 3.538A pdb=" N GLU C 196 " --> pdb=" O LEU C 192 " (cutoff:3.500A) removed outlier: 4.641A pdb=" N SER C 197 " --> pdb=" O THR C 193 " (cutoff:3.500A) Processing helix chain 'C' and resid 203 through 208 removed outlier: 3.949A pdb=" N ILE C 207 " --> pdb=" O THR C 203 " (cutoff:3.500A) removed outlier: 6.050A pdb=" N GLU C 208 " --> pdb=" O GLU C 204 " (cutoff:3.500A) No H-bonds generated for 'chain 'C' and resid 203 through 208' Processing helix chain 'C' and resid 221 through 231 removed outlier: 4.806A pdb=" N ALA C 231 " --> pdb=" O ASP C 227 " (cutoff:3.500A) Processing helix chain 'i' and resid 18 through 32 removed outlier: 3.657A pdb=" N GLY i 30 " --> pdb=" O ALA i 26 " (cutoff:3.500A) removed outlier: 3.850A pdb=" N GLY i 31 " --> pdb=" O ALA i 27 " (cutoff:3.500A) removed outlier: 5.568A pdb=" N ALA i 32 " --> pdb=" O VAL i 28 " (cutoff:3.500A) Processing helix chain 'i' and resid 57 through 62 removed outlier: 4.373A pdb=" N VAL i 61 " --> pdb=" O ASP i 57 " (cutoff:3.500A) removed outlier: 5.784A pdb=" N HIS i 62 " --> pdb=" O GLU i 58 " (cutoff:3.500A) No H-bonds generated for 'chain 'i' and resid 57 through 62' Processing helix chain 'i' and resid 78 through 101 Processing helix chain 'i' and resid 105 through 123 removed outlier: 3.702A pdb=" N TYR i 120 " --> pdb=" O VAL i 116 " (cutoff:3.500A) removed outlier: 3.999A pdb=" N THR i 121 " --> pdb=" O MET i 117 " (cutoff:3.500A) removed outlier: 3.780A pdb=" N GLN i 122 " --> pdb=" O GLN i 118 " (cutoff:3.500A) Processing helix chain 'i' and resid 165 through 176 Processing helix chain 'i' and resid 182 through 198 removed outlier: 4.652A pdb=" N SER i 197 " --> pdb=" O THR i 193 " (cutoff:3.500A) Processing helix chain 'i' and resid 203 through 208 removed outlier: 3.968A pdb=" N ILE i 207 " --> pdb=" O THR i 203 " (cutoff:3.500A) removed outlier: 6.052A pdb=" N GLU i 208 " --> pdb=" O GLU i 204 " (cutoff:3.500A) No H-bonds generated for 'chain 'i' and resid 203 through 208' Processing helix chain 'i' and resid 221 through 231 removed outlier: 4.385A pdb=" N ALA i 231 " --> pdb=" O ASP i 227 " (cutoff:3.500A) Processing helix chain 'D' and resid 18 through 32 removed outlier: 3.529A pdb=" N HIS D 30 " --> pdb=" O GLU D 26 " (cutoff:3.500A) removed outlier: 3.722A pdb=" N ALA D 31 " --> pdb=" O ALA D 27 " (cutoff:3.500A) removed outlier: 5.463A pdb=" N GLY D 32 " --> pdb=" O ILE D 28 " (cutoff:3.500A) Processing helix chain 'D' and resid 79 through 102 Processing helix chain 'D' and resid 106 through 124 removed outlier: 3.689A pdb=" N ILE D 117 " --> pdb=" O ALA D 113 " (cutoff:3.500A) Processing helix chain 'D' and resid 167 through 179 Processing helix chain 'D' and resid 185 through 201 Processing helix chain 'D' and resid 207 through 212 removed outlier: 3.583A pdb=" N VAL D 211 " --> pdb=" O SER D 207 " (cutoff:3.500A) removed outlier: 5.195A pdb=" N GLU D 212 " --> pdb=" O ALA D 208 " (cutoff:3.500A) No H-bonds generated for 'chain 'D' and resid 207 through 212' Processing helix chain 'D' and resid 229 through 251 removed outlier: 3.832A pdb=" N LYS D 246 " --> pdb=" O GLU D 242 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N ARG D 249 " --> pdb=" O ALA D 245 " (cutoff:3.500A) removed outlier: 4.177A pdb=" N GLU D 250 " --> pdb=" O LYS D 246 " (cutoff:3.500A) removed outlier: 5.799A pdb=" N LYS D 251 " --> pdb=" O ALA D 247 " (cutoff:3.500A) Processing helix chain 'j' and resid 18 through 32 removed outlier: 3.527A pdb=" N HIS j 30 " --> pdb=" O GLU j 26 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ALA j 31 " --> pdb=" O ALA j 27 " (cutoff:3.500A) removed outlier: 5.479A pdb=" N GLY j 32 " --> pdb=" O ILE j 28 " (cutoff:3.500A) Processing helix chain 'j' and resid 79 through 102 Processing helix chain 'j' and resid 106 through 124 removed outlier: 3.711A pdb=" N ILE j 117 " --> pdb=" O ALA j 113 " (cutoff:3.500A) Processing helix chain 'j' and resid 167 through 179 Processing helix chain 'j' and resid 185 through 201 Processing helix chain 'j' and resid 207 through 212 removed outlier: 3.575A pdb=" N VAL j 211 " --> pdb=" O SER j 207 " (cutoff:3.500A) removed outlier: 5.182A pdb=" N GLU j 212 " --> pdb=" O ALA j 208 " (cutoff:3.500A) No H-bonds generated for 'chain 'j' and resid 207 through 212' Processing helix chain 'j' and resid 229 through 251 removed outlier: 3.837A pdb=" N LYS j 246 " --> pdb=" O GLU j 242 " (cutoff:3.500A) removed outlier: 4.008A pdb=" N ARG j 249 " --> pdb=" O ALA j 245 " (cutoff:3.500A) removed outlier: 4.179A pdb=" N GLU j 250 " --> pdb=" O LYS j 246 " (cutoff:3.500A) removed outlier: 5.789A pdb=" N LYS j 251 " --> pdb=" O ALA j 247 " (cutoff:3.500A) Processing helix chain 'E' and resid 16 through 30 removed outlier: 3.691A pdb=" N GLY E 29 " --> pdb=" O ALA E 25 " (cutoff:3.500A) removed outlier: 5.605A pdb=" N SER E 30 " --> pdb=" O VAL E 26 " (cutoff:3.500A) Processing helix chain 'E' and resid 55 through 60 removed outlier: 3.884A pdb=" N VAL E 59 " --> pdb=" O ASP E 55 " (cutoff:3.500A) Processing helix chain 'E' and resid 76 through 98 removed outlier: 3.563A pdb=" N ARG E 95 " --> pdb=" O CYS E 91 " (cutoff:3.500A) Processing helix chain 'E' and resid 103 through 121 Processing helix chain 'E' and resid 164 through 176 removed outlier: 3.623A pdb=" N VAL E 168 " --> pdb=" O GLY E 164 " (cutoff:3.500A) Processing helix chain 'E' and resid 177 through 182 removed outlier: 4.810A pdb=" N ILE E 181 " --> pdb=" O THR E 177 " (cutoff:3.500A) removed outlier: 4.562A pdb=" N GLU E 182 " --> pdb=" O ASP E 178 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 177 through 182' Processing helix chain 'E' and resid 183 through 199 removed outlier: 3.712A pdb=" N GLU E 197 " --> pdb=" O LYS E 193 " (cutoff:3.500A) removed outlier: 4.154A pdb=" N VAL E 198 " --> pdb=" O ALA E 194 " (cutoff:3.500A) Processing helix chain 'E' and resid 202 through 207 removed outlier: 6.918A pdb=" N ILE E 206 " --> pdb=" O GLY E 202 " (cutoff:3.500A) removed outlier: 5.946A pdb=" N GLU E 207 " --> pdb=" O GLY E 203 " (cutoff:3.500A) No H-bonds generated for 'chain 'E' and resid 202 through 207' Processing helix chain 'E' and resid 221 through 244 removed outlier: 4.609A pdb=" N GLU E 240 " --> pdb=" O LYS E 236 " (cutoff:3.500A) removed outlier: 4.320A pdb=" N LYS E 241 " --> pdb=" O GLU E 237 " (cutoff:3.500A) removed outlier: 5.038A pdb=" N LYS E 242 " --> pdb=" O GLU E 238 " (cutoff:3.500A) removed outlier: 5.263A pdb=" N LYS E 243 " --> pdb=" O ASN E 239 " (cutoff:3.500A) removed outlier: 3.813A pdb=" N GLN E 244 " --> pdb=" O GLU E 240 " (cutoff:3.500A) Processing helix chain 'k' and resid 16 through 30 removed outlier: 3.685A pdb=" N GLY k 29 " --> pdb=" O ALA k 25 " (cutoff:3.500A) removed outlier: 5.595A pdb=" N SER k 30 " --> pdb=" O VAL k 26 " (cutoff:3.500A) Processing helix chain 'k' and resid 55 through 60 removed outlier: 3.834A pdb=" N VAL k 59 " --> pdb=" O ASP k 55 " (cutoff:3.500A) Processing helix chain 'k' and resid 76 through 98 removed outlier: 3.565A pdb=" N ARG k 95 " --> pdb=" O CYS k 91 " (cutoff:3.500A) Processing helix chain 'k' and resid 103 through 121 Processing helix chain 'k' and resid 164 through 176 removed outlier: 3.618A pdb=" N VAL k 168 " --> pdb=" O GLY k 164 " (cutoff:3.500A) Processing helix chain 'k' and resid 177 through 182 removed outlier: 4.821A pdb=" N ILE k 181 " --> pdb=" O THR k 177 " (cutoff:3.500A) removed outlier: 4.549A pdb=" N GLU k 182 " --> pdb=" O ASP k 178 " (cutoff:3.500A) No H-bonds generated for 'chain 'k' and resid 177 through 182' Processing helix chain 'k' and resid 183 through 199 removed outlier: 3.703A pdb=" N GLU k 197 " --> pdb=" O LYS k 193 " (cutoff:3.500A) removed outlier: 4.158A pdb=" N VAL k 198 " --> pdb=" O ALA k 194 " (cutoff:3.500A) Processing helix chain 'k' and resid 202 through 207 removed outlier: 6.902A pdb=" N ILE k 206 " --> pdb=" O GLY k 202 " (cutoff:3.500A) removed outlier: 5.950A pdb=" N GLU k 207 " --> pdb=" O GLY k 203 " (cutoff:3.500A) No H-bonds generated for 'chain 'k' and resid 202 through 207' Processing helix chain 'k' and resid 221 through 244 removed outlier: 4.601A pdb=" N GLU k 240 " --> pdb=" O LYS k 236 " (cutoff:3.500A) removed outlier: 4.332A pdb=" N LYS k 241 " --> pdb=" O GLU k 237 " (cutoff:3.500A) removed outlier: 5.036A pdb=" N LYS k 242 " --> pdb=" O GLU k 238 " (cutoff:3.500A) removed outlier: 5.256A pdb=" N LYS k 243 " --> pdb=" O ASN k 239 " (cutoff:3.500A) removed outlier: 3.818A pdb=" N GLN k 244 " --> pdb=" O GLU k 240 " (cutoff:3.500A) Processing helix chain 'F' and resid 21 through 35 removed outlier: 3.676A pdb=" N LYS F 32 " --> pdb=" O ILE F 28 " (cutoff:3.500A) removed outlier: 4.293A pdb=" N LEU F 33 " --> pdb=" O GLU F 29 " (cutoff:3.500A) removed outlier: 4.267A pdb=" N GLY F 34 " --> pdb=" O ALA F 30 " (cutoff:3.500A) removed outlier: 5.503A pdb=" N SER F 35 " --> pdb=" O ILE F 31 " (cutoff:3.500A) Processing helix chain 'F' and resid 60 through 65 removed outlier: 4.325A pdb=" N ILE F 64 " --> pdb=" O GLU F 60 " (cutoff:3.500A) removed outlier: 5.353A pdb=" N GLU F 65 " --> pdb=" O PRO F 61 " (cutoff:3.500A) No H-bonds generated for 'chain 'F' and resid 60 through 65' Processing helix chain 'F' and resid 81 through 103 removed outlier: 4.063A pdb=" N THR F 87 " --> pdb=" O ALA F 83 " (cutoff:3.500A) removed outlier: 3.796A pdb=" N LEU F 88 " --> pdb=" O ASP F 84 " (cutoff:3.500A) Processing helix chain 'F' and resid 108 through 121 removed outlier: 3.894A pdb=" N LEU F 119 " --> pdb=" O ALA F 115 " (cutoff:3.500A) removed outlier: 4.206A pdb=" N ALA F 120 " --> pdb=" O VAL F 116 " (cutoff:3.500A) removed outlier: 5.262A pdb=" N LEU F 121 " --> pdb=" O SER F 117 " (cutoff:3.500A) Processing helix chain 'F' and resid 173 through 185 Processing helix chain 'F' and resid 190 through 206 Processing helix chain 'F' and resid 230 through 241 removed outlier: 3.676A pdb=" N VAL F 237 " --> pdb=" O GLU F 233 " (cutoff:3.500A) removed outlier: 4.151A pdb=" N ASP F 240 " --> pdb=" O GLU F 236 " (cutoff:3.500A) removed outlier: 4.315A pdb=" N ILE F 241 " --> pdb=" O VAL F 237 " (cutoff:3.500A) Processing helix chain 'G' and resid 19 through 33 removed outlier: 3.571A pdb=" N ALA G 28 " --> pdb=" O TYR G 24 " (cutoff:3.500A) removed outlier: 4.053A pdb=" N VAL G 29 " --> pdb=" O ALA G 25 " (cutoff:3.500A) removed outlier: 3.961A pdb=" N LYS G 30 " --> pdb=" O MET G 26 " (cutoff:3.500A) removed outlier: 3.564A pdb=" N GLN G 31 " --> pdb=" O GLU G 27 " (cutoff:3.500A) removed outlier: 3.952A pdb=" N GLY G 32 " --> pdb=" O ALA G 28 " (cutoff:3.500A) removed outlier: 5.634A pdb=" N SER G 33 " --> pdb=" O VAL G 29 " (cutoff:3.500A) Processing helix chain 'G' and resid 77 through 99 Processing helix chain 'G' and resid 104 through 123 removed outlier: 3.595A pdb=" N ILE G 118 " --> pdb=" O SER G 114 " (cutoff:3.500A) Proline residue: G 119 - end of helix removed outlier: 3.751A pdb=" N ARG G 122 " --> pdb=" O ILE G 118 " (cutoff:3.500A) removed outlier: 6.030A pdb=" N TYR G 123 " --> pdb=" O PRO G 119 " (cutoff:3.500A) Processing helix chain 'G' and resid 164 through 180 removed outlier: 4.460A pdb=" N ALA G 168 " --> pdb=" O ARG G 164 " (cutoff:3.500A) removed outlier: 6.149A pdb=" N SER G 177 " --> pdb=" O GLU G 173 " (cutoff:3.500A) removed outlier: 6.064A pdb=" N GLU G 178 " --> pdb=" O ARG G 174 " (cutoff:3.500A) removed outlier: 3.645A pdb=" N PHE G 179 " --> pdb=" O HIS G 175 " (cutoff:3.500A) removed outlier: 4.165A pdb=" N MET G 180 " --> pdb=" O MET G 176 " (cutoff:3.500A) Processing helix chain 'G' and resid 183 through 199 removed outlier: 3.932A pdb=" N THR G 198 " --> pdb=" O ALA G 194 " (cutoff:3.500A) removed outlier: 4.535A pdb=" N LEU G 199 " --> pdb=" O LEU G 195 " (cutoff:3.500A) Processing helix chain 'G' and resid 226 through 236 removed outlier: 4.452A pdb=" N SER G 230 " --> pdb=" O ASP G 226 " (cutoff:3.500A) Proline residue: G 231 - end of helix removed outlier: 5.070A pdb=" N GLY G 235 " --> pdb=" O PRO G 231 " (cutoff:3.500A) removed outlier: 4.665A pdb=" N LEU G 236 " --> pdb=" O PHE G 232 " (cutoff:3.500A) Processing helix chain 'm' and resid 19 through 33 removed outlier: 3.560A pdb=" N ALA m 28 " --> pdb=" O TYR m 24 " (cutoff:3.500A) removed outlier: 4.056A pdb=" N VAL m 29 " --> pdb=" O ALA m 25 " (cutoff:3.500A) removed outlier: 3.965A pdb=" N LYS m 30 " --> pdb=" O MET m 26 " (cutoff:3.500A) removed outlier: 3.527A pdb=" N GLN m 31 " --> pdb=" O GLU m 27 " (cutoff:3.500A) removed outlier: 3.977A pdb=" N GLY m 32 " --> pdb=" O ALA m 28 " (cutoff:3.500A) removed outlier: 5.623A pdb=" N SER m 33 " --> pdb=" O VAL m 29 " (cutoff:3.500A) Processing helix chain 'm' and resid 77 through 99 Processing helix chain 'm' and resid 104 through 123 removed outlier: 3.588A pdb=" N ILE m 118 " --> pdb=" O SER m 114 " (cutoff:3.500A) Proline residue: m 119 - end of helix removed outlier: 3.769A pdb=" N ARG m 122 " --> pdb=" O ILE m 118 " (cutoff:3.500A) removed outlier: 6.033A pdb=" N TYR m 123 " --> pdb=" O PRO m 119 " (cutoff:3.500A) Processing helix chain 'm' and resid 164 through 180 removed outlier: 4.439A pdb=" N ALA m 168 " --> pdb=" O ARG m 164 " (cutoff:3.500A) removed outlier: 6.154A pdb=" N SER m 177 " --> pdb=" O GLU m 173 " (cutoff:3.500A) removed outlier: 6.177A pdb=" N GLU m 178 " --> pdb=" O ARG m 174 " (cutoff:3.500A) removed outlier: 3.636A pdb=" N PHE m 179 " --> pdb=" O HIS m 175 " (cutoff:3.500A) removed outlier: 4.153A pdb=" N MET m 180 " --> pdb=" O MET m 176 " (cutoff:3.500A) Processing helix chain 'm' and resid 183 through 199 removed outlier: 3.925A pdb=" N THR m 198 " --> pdb=" O ALA m 194 " (cutoff:3.500A) removed outlier: 4.529A pdb=" N LEU m 199 " --> pdb=" O LEU m 195 " (cutoff:3.500A) Processing helix chain 'm' and resid 226 through 236 removed outlier: 3.768A pdb=" N SER m 230 " --> pdb=" O ASP m 226 " (cutoff:3.500A) Proline residue: m 231 - end of helix removed outlier: 5.026A pdb=" N GLY m 235 " --> pdb=" O PRO m 231 " (cutoff:3.500A) removed outlier: 4.642A pdb=" N LEU m 236 " --> pdb=" O PHE m 232 " (cutoff:3.500A) Processing helix chain 'X' and resid 20 through 34 removed outlier: 3.501A pdb=" N GLU X 24 " --> pdb=" O VAL X 20 " (cutoff:3.500A) removed outlier: 3.820A pdb=" N SER X 33 " --> pdb=" O ALA X 29 " (cutoff:3.500A) removed outlier: 5.530A pdb=" N SER X 34 " --> pdb=" O VAL X 30 " (cutoff:3.500A) Processing helix chain 'X' and resid 80 through 102 Processing helix chain 'X' and resid 107 through 125 removed outlier: 3.893A pdb=" N TYR X 122 " --> pdb=" O TYR X 118 " (cutoff:3.500A) removed outlier: 4.087A pdb=" N THR X 123 " --> pdb=" O VAL X 119 " (cutoff:3.500A) removed outlier: 4.205A pdb=" N LEU X 124 " --> pdb=" O HIS X 120 " (cutoff:3.500A) removed outlier: 5.067A pdb=" N TYR X 125 " --> pdb=" O ALA X 121 " (cutoff:3.500A) Processing helix chain 'X' and resid 168 through 180 removed outlier: 3.972A pdb=" N LYS X 178 " --> pdb=" O THR X 174 " (cutoff:3.500A) removed outlier: 4.240A pdb=" N LEU X 179 " --> pdb=" O GLU X 175 " (cutoff:3.500A) removed outlier: 5.458A pdb=" N GLN X 180 " --> pdb=" O ILE X 176 " (cutoff:3.500A) Processing helix chain 'X' and resid 186 through 201 removed outlier: 4.236A pdb=" N LYS X 191 " --> pdb=" O ARG X 187 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N GLU X 192 " --> pdb=" O ASP X 188 " (cutoff:3.500A) Processing helix chain 'X' and resid 228 through 245 removed outlier: 3.650A pdb=" N LYS X 244 " --> pdb=" O LYS X 240 " (cutoff:3.500A) removed outlier: 5.142A pdb=" N GLU X 245 " --> pdb=" O GLU X 241 " (cutoff:3.500A) Processing helix chain 'X' and resid 202 through 207 removed outlier: 4.975A pdb=" N LYS X 207 " --> pdb=" O ASP X 202 " (cutoff:3.500A) No H-bonds generated for 'chain 'X' and resid 202 through 207' Processing helix chain 'n' and resid 20 through 34 removed outlier: 3.823A pdb=" N SER n 33 " --> pdb=" O ALA n 29 " (cutoff:3.500A) removed outlier: 5.536A pdb=" N SER n 34 " --> pdb=" O VAL n 30 " (cutoff:3.500A) Processing helix chain 'n' and resid 80 through 102 Processing helix chain 'n' and resid 107 through 125 removed outlier: 3.872A pdb=" N TYR n 122 " --> pdb=" O TYR n 118 " (cutoff:3.500A) removed outlier: 4.084A pdb=" N THR n 123 " --> pdb=" O VAL n 119 " (cutoff:3.500A) removed outlier: 4.219A pdb=" N LEU n 124 " --> pdb=" O HIS n 120 " (cutoff:3.500A) removed outlier: 5.069A pdb=" N TYR n 125 " --> pdb=" O ALA n 121 " (cutoff:3.500A) Processing helix chain 'n' and resid 168 through 180 removed outlier: 3.953A pdb=" N LYS n 178 " --> pdb=" O THR n 174 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LEU n 179 " --> pdb=" O GLU n 175 " (cutoff:3.500A) removed outlier: 5.454A pdb=" N GLN n 180 " --> pdb=" O ILE n 176 " (cutoff:3.500A) Processing helix chain 'n' and resid 186 through 201 removed outlier: 4.559A pdb=" N LYS n 191 " --> pdb=" O ARG n 187 " (cutoff:3.500A) removed outlier: 3.746A pdb=" N GLU n 192 " --> pdb=" O ASP n 188 " (cutoff:3.500A) Processing helix chain 'n' and resid 228 through 245 removed outlier: 3.660A pdb=" N LYS n 244 " --> pdb=" O LYS n 240 " (cutoff:3.500A) removed outlier: 5.150A pdb=" N GLU n 245 " --> pdb=" O GLU n 241 " (cutoff:3.500A) Processing helix chain 'n' and resid 202 through 207 removed outlier: 4.978A pdb=" N LYS n 207 " --> pdb=" O ASP n 202 " (cutoff:3.500A) No H-bonds generated for 'chain 'n' and resid 202 through 207' Processing helix chain 'a' and resid 48 through 71 Processing helix chain 'a' and resid 75 through 91 removed outlier: 3.564A pdb=" N ARG a 91 " --> pdb=" O CYS a 87 " (cutoff:3.500A) Processing helix chain 'a' and resid 131 through 143 removed outlier: 3.847A pdb=" N ILE a 135 " --> pdb=" O GLY a 131 " (cutoff:3.500A) removed outlier: 5.404A pdb=" N GLY a 137 " --> pdb=" O SER a 133 " (cutoff:3.500A) removed outlier: 5.574A pdb=" N TYR a 138 " --> pdb=" O TYR a 134 " (cutoff:3.500A) Processing helix chain 'a' and resid 148 through 167 Processing helix chain 'o' and resid 48 through 71 Processing helix chain 'o' and resid 75 through 91 removed outlier: 3.562A pdb=" N ARG o 91 " --> pdb=" O CYS o 87 " (cutoff:3.500A) Processing helix chain 'o' and resid 131 through 143 removed outlier: 3.841A pdb=" N ILE o 135 " --> pdb=" O GLY o 131 " (cutoff:3.500A) removed outlier: 5.406A pdb=" N GLY o 137 " --> pdb=" O SER o 133 " (cutoff:3.500A) removed outlier: 5.565A pdb=" N TYR o 138 " --> pdb=" O TYR o 134 " (cutoff:3.500A) Processing helix chain 'o' and resid 148 through 167 Processing helix chain 'b' and resid 48 through 71 Processing helix chain 'b' and resid 75 through 91 removed outlier: 3.561A pdb=" N ALA b 79 " --> pdb=" O ARG b 75 " (cutoff:3.500A) Processing helix chain 'b' and resid 130 through 141 removed outlier: 3.504A pdb=" N ALA b 134 " --> pdb=" O GLY b 130 " (cutoff:3.500A) Processing helix chain 'b' and resid 147 through 166 Processing helix chain 'p' and resid 48 through 71 Processing helix chain 'p' and resid 75 through 91 removed outlier: 3.556A pdb=" N ALA p 79 " --> pdb=" O ARG p 75 " (cutoff:3.500A) Processing helix chain 'p' and resid 130 through 141 removed outlier: 3.503A pdb=" N ALA p 134 " --> pdb=" O GLY p 130 " (cutoff:3.500A) Processing helix chain 'p' and resid 147 through 166 Processing helix chain 'c' and resid 2 through 8 removed outlier: 3.647A pdb=" N TYR c 6 " --> pdb=" O SER c 2 " (cutoff:3.500A) removed outlier: 4.610A pdb=" N ASN c 7 " --> pdb=" O ILE c 3 " (cutoff:3.500A) removed outlier: 3.631A pdb=" N GLY c 8 " --> pdb=" O MET c 4 " (cutoff:3.500A) No H-bonds generated for 'chain 'c' and resid 2 through 8' Processing helix chain 'c' and resid 56 through 79 removed outlier: 4.646A pdb=" N GLY c 79 " --> pdb=" O GLU c 75 " (cutoff:3.500A) Processing helix chain 'c' and resid 83 through 99 removed outlier: 4.308A pdb=" N LYS c 98 " --> pdb=" O LEU c 94 " (cutoff:3.500A) removed outlier: 3.910A pdb=" N ARG c 99 " --> pdb=" O LEU c 95 " (cutoff:3.500A) Processing helix chain 'c' and resid 142 through 154 removed outlier: 3.684A pdb=" N SER c 152 " --> pdb=" O GLY c 148 " (cutoff:3.500A) Processing helix chain 'c' and resid 159 through 179 removed outlier: 3.853A pdb=" N ARG c 177 " --> pdb=" O ASN c 173 " (cutoff:3.500A) removed outlier: 3.669A pdb=" N ASP c 178 " --> pdb=" O ALA c 174 " (cutoff:3.500A) removed outlier: 5.008A pdb=" N ALA c 179 " --> pdb=" O VAL c 175 " (cutoff:3.500A) Processing helix chain 'q' and resid 2 through 8 removed outlier: 3.626A pdb=" N TYR q 6 " --> pdb=" O SER q 2 " (cutoff:3.500A) removed outlier: 4.595A pdb=" N ASN q 7 " --> pdb=" O ILE q 3 " (cutoff:3.500A) removed outlier: 3.622A pdb=" N GLY q 8 " --> pdb=" O MET q 4 " (cutoff:3.500A) No H-bonds generated for 'chain 'q' and resid 2 through 8' Processing helix chain 'q' and resid 56 through 79 removed outlier: 4.665A pdb=" N GLY q 79 " --> pdb=" O GLU q 75 " (cutoff:3.500A) Processing helix chain 'q' and resid 83 through 99 removed outlier: 4.274A pdb=" N LYS q 98 " --> pdb=" O LEU q 94 " (cutoff:3.500A) removed outlier: 3.913A pdb=" N ARG q 99 " --> pdb=" O LEU q 95 " (cutoff:3.500A) Processing helix chain 'q' and resid 142 through 154 removed outlier: 3.706A pdb=" N SER q 152 " --> pdb=" O GLY q 148 " (cutoff:3.500A) Processing helix chain 'q' and resid 159 through 179 removed outlier: 3.852A pdb=" N ARG q 177 " --> pdb=" O ASN q 173 " (cutoff:3.500A) removed outlier: 3.672A pdb=" N ASP q 178 " --> pdb=" O ALA q 174 " (cutoff:3.500A) removed outlier: 5.015A pdb=" N ALA q 179 " --> pdb=" O VAL q 175 " (cutoff:3.500A) Processing helix chain 'd' and resid 50 through 72 removed outlier: 4.896A pdb=" N VAL d 54 " --> pdb=" O ALA d 50 " (cutoff:3.500A) Processing helix chain 'd' and resid 76 through 95 removed outlier: 4.458A pdb=" N ARG d 93 " --> pdb=" O ALA d 89 " (cutoff:3.500A) removed outlier: 4.417A pdb=" N SER d 94 " --> pdb=" O ASP d 90 " (cutoff:3.500A) removed outlier: 5.130A pdb=" N ARG d 95 " --> pdb=" O CYS d 91 " (cutoff:3.500A) Processing helix chain 'd' and resid 133 through 147 removed outlier: 4.186A pdb=" N PHE d 137 " --> pdb=" O GLY d 133 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N LEU d 138 " --> pdb=" O TYR d 134 " (cutoff:3.500A) removed outlier: 5.438A pdb=" N SER d 141 " --> pdb=" O PHE d 137 " (cutoff:3.500A) removed outlier: 4.745A pdb=" N ILE d 142 " --> pdb=" O LEU d 138 " (cutoff:3.500A) Processing helix chain 'd' and resid 152 through 170 Processing helix chain 'r' and resid 50 through 72 removed outlier: 4.881A pdb=" N VAL r 54 " --> pdb=" O ALA r 50 " (cutoff:3.500A) Processing helix chain 'r' and resid 76 through 95 removed outlier: 4.461A pdb=" N ARG r 93 " --> pdb=" O ALA r 89 " (cutoff:3.500A) removed outlier: 4.416A pdb=" N SER r 94 " --> pdb=" O ASP r 90 " (cutoff:3.500A) removed outlier: 5.122A pdb=" N ARG r 95 " --> pdb=" O CYS r 91 " (cutoff:3.500A) Processing helix chain 'r' and resid 133 through 147 removed outlier: 4.182A pdb=" N PHE r 137 " --> pdb=" O GLY r 133 " (cutoff:3.500A) removed outlier: 4.187A pdb=" N LEU r 138 " --> pdb=" O TYR r 134 " (cutoff:3.500A) removed outlier: 5.436A pdb=" N SER r 141 " --> pdb=" O PHE r 137 " (cutoff:3.500A) removed outlier: 4.730A pdb=" N ILE r 142 " --> pdb=" O LEU r 138 " (cutoff:3.500A) Processing helix chain 'r' and resid 152 through 170 Processing helix chain 'e' and resid 48 through 71 Processing helix chain 'e' and resid 75 through 91 removed outlier: 3.839A pdb=" N GLN e 89 " --> pdb=" O ASN e 85 " (cutoff:3.500A) removed outlier: 4.501A pdb=" N TYR e 90 " --> pdb=" O MET e 86 " (cutoff:3.500A) removed outlier: 3.837A pdb=" N LYS e 91 " --> pdb=" O VAL e 87 " (cutoff:3.500A) Processing helix chain 'e' and resid 131 through 143 removed outlier: 3.579A pdb=" N GLY e 137 " --> pdb=" O VAL e 133 " (cutoff:3.500A) removed outlier: 3.811A pdb=" N VAL e 138 " --> pdb=" O TYR e 134 " (cutoff:3.500A) Processing helix chain 'e' and resid 148 through 167 Processing helix chain 'e' and resid 191 through 200 removed outlier: 3.560A pdb=" N GLU e 197 " --> pdb=" O ALA e 193 " (cutoff:3.500A) Processing helix chain 's' and resid 48 through 71 Processing helix chain 's' and resid 75 through 91 removed outlier: 3.835A pdb=" N GLN s 89 " --> pdb=" O ASN s 85 " (cutoff:3.500A) removed outlier: 4.504A pdb=" N TYR s 90 " --> pdb=" O MET s 86 " (cutoff:3.500A) removed outlier: 3.836A pdb=" N LYS s 91 " --> pdb=" O VAL s 87 " (cutoff:3.500A) Processing helix chain 's' and resid 131 through 143 removed outlier: 3.575A pdb=" N GLY s 137 " --> pdb=" O VAL s 133 " (cutoff:3.500A) removed outlier: 3.807A pdb=" N VAL s 138 " --> pdb=" O TYR s 134 " (cutoff:3.500A) Processing helix chain 's' and resid 148 through 167 Processing helix chain 's' and resid 191 through 200 removed outlier: 3.541A pdb=" N GLU s 197 " --> pdb=" O ALA s 193 " (cutoff:3.500A) Processing helix chain 'f' and resid 57 through 80 Processing helix chain 'f' and resid 84 through 101 removed outlier: 4.016A pdb=" N ARG f 99 " --> pdb=" O ILE f 95 " (cutoff:3.500A) removed outlier: 3.995A pdb=" N ARG f 100 " --> pdb=" O LEU f 96 " (cutoff:3.500A) removed outlier: 5.347A pdb=" N PHE f 101 " --> pdb=" O TYR f 97 " (cutoff:3.500A) Processing helix chain 'f' and resid 141 through 153 Proline residue: f 147 - end of helix Processing helix chain 'f' and resid 167 through 186 Processing helix chain 't' and resid 57 through 80 Processing helix chain 't' and resid 84 through 101 removed outlier: 4.019A pdb=" N ARG t 99 " --> pdb=" O ILE t 95 " (cutoff:3.500A) removed outlier: 4.004A pdb=" N ARG t 100 " --> pdb=" O LEU t 96 " (cutoff:3.500A) removed outlier: 5.344A pdb=" N PHE t 101 " --> pdb=" O TYR t 97 " (cutoff:3.500A) Processing helix chain 't' and resid 141 through 153 Proline residue: t 147 - end of helix Processing helix chain 't' and resid 167 through 186 Processing helix chain 'g' and resid 56 through 78 removed outlier: 3.955A pdb=" N LEU g 77 " --> pdb=" O ASP g 73 " (cutoff:3.500A) removed outlier: 3.880A pdb=" N GLY g 78 " --> pdb=" O GLU g 74 " (cutoff:3.500A) Processing helix chain 'g' and resid 84 through 103 Processing helix chain 'g' and resid 140 through 157 removed outlier: 3.950A pdb=" N TYR g 144 " --> pdb=" O GLY g 140 " (cutoff:3.500A) removed outlier: 4.767A pdb=" N GLN g 147 " --> pdb=" O ALA g 143 " (cutoff:3.500A) Proline residue: g 148 - end of helix removed outlier: 3.661A pdb=" N LYS g 156 " --> pdb=" O GLU g 152 " (cutoff:3.500A) Processing helix chain 'g' and resid 161 through 180 Processing helix chain 'g' and resid 209 through 215 removed outlier: 4.605A pdb=" N HIS g 213 " --> pdb=" O TRP g 209 " (cutoff:3.500A) removed outlier: 4.299A pdb=" N MET g 214 " --> pdb=" O ASP g 210 " (cutoff:3.500A) removed outlier: 4.718A pdb=" N ILE g 215 " --> pdb=" O ILE g 211 " (cutoff:3.500A) No H-bonds generated for 'chain 'g' and resid 209 through 215' Processing helix chain 'l' and resid 21 through 32 removed outlier: 3.666A pdb=" N LYS l 32 " --> pdb=" O ILE l 28 " (cutoff:3.500A) Processing helix chain 'l' and resid 87 through 100 Processing helix chain 'l' and resid 173 through 185 Processing helix chain 'l' and resid 194 through 206 Processing helix chain 'l' and resid 230 through 241 removed outlier: 3.675A pdb=" N VAL l 237 " --> pdb=" O GLU l 233 " (cutoff:3.500A) removed outlier: 4.155A pdb=" N ASP l 240 " --> pdb=" O GLU l 236 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N ILE l 241 " --> pdb=" O VAL l 237 " (cutoff:3.500A) Processing helix chain 'u' and resid 56 through 78 removed outlier: 3.956A pdb=" N LEU u 77 " --> pdb=" O ASP u 73 " (cutoff:3.500A) removed outlier: 3.877A pdb=" N GLY u 78 " --> pdb=" O GLU u 74 " (cutoff:3.500A) Processing helix chain 'u' and resid 84 through 103 Processing helix chain 'u' and resid 140 through 158 removed outlier: 3.946A pdb=" N TYR u 144 " --> pdb=" O GLY u 140 " (cutoff:3.500A) removed outlier: 4.752A pdb=" N GLN u 147 " --> pdb=" O ALA u 143 " (cutoff:3.500A) Proline residue: u 148 - end of helix removed outlier: 3.648A pdb=" N LYS u 156 " --> pdb=" O GLU u 152 " (cutoff:3.500A) Proline residue: u 158 - end of helix Processing helix chain 'u' and resid 161 through 180 Processing helix chain 'u' and resid 209 through 215 removed outlier: 4.601A pdb=" N HIS u 213 " --> pdb=" O TRP u 209 " (cutoff:3.500A) removed outlier: 4.292A pdb=" N MET u 214 " --> pdb=" O ASP u 210 " (cutoff:3.500A) removed outlier: 4.724A pdb=" N ILE u 215 " --> pdb=" O ILE u 211 " (cutoff:3.500A) No H-bonds generated for 'chain 'u' and resid 209 through 215' Processing sheet with id= 1, first strand: chain 'I' and resid 128 through 133 removed outlier: 6.913A pdb=" N ILE I 122 " --> pdb=" O GLU I 113 " (cutoff:3.500A) Processing sheet with id= 2, first strand: chain 'I' and resid 246 through 250 removed outlier: 3.903A pdb=" N THR I 246 " --> pdb=" O PRO I 279 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ASP I 285 " --> pdb=" O VAL I 250 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ARG I 349 " --> pdb=" O GLY I 221 " (cutoff:3.500A) Processing sheet with id= 3, first strand: chain 'w' and resid 128 through 133 removed outlier: 6.913A pdb=" N ILE w 122 " --> pdb=" O GLU w 113 " (cutoff:3.500A) Processing sheet with id= 4, first strand: chain 'w' and resid 246 through 250 removed outlier: 3.903A pdb=" N THR w 246 " --> pdb=" O PRO w 279 " (cutoff:3.500A) removed outlier: 3.824A pdb=" N ASP w 285 " --> pdb=" O VAL w 250 " (cutoff:3.500A) removed outlier: 3.632A pdb=" N ARG w 349 " --> pdb=" O GLY w 221 " (cutoff:3.500A) Processing sheet with id= 5, first strand: chain 'H' and resid 110 through 115 removed outlier: 6.323A pdb=" N ALA H 119 " --> pdb=" O VAL H 115 " (cutoff:3.500A) Processing sheet with id= 6, first strand: chain 'H' and resid 235 through 240 removed outlier: 3.965A pdb=" N ASP H 275 " --> pdb=" O VAL H 240 " (cutoff:3.500A) removed outlier: 6.570A pdb=" N LYS H 210 " --> pdb=" O ILE H 315 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N ARG H 339 " --> pdb=" O GLY H 211 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N PHE H 215 " --> pdb=" O ILE H 341 " (cutoff:3.500A) Processing sheet with id= 7, first strand: chain 'v' and resid 110 through 115 removed outlier: 6.323A pdb=" N ALA v 119 " --> pdb=" O VAL v 115 " (cutoff:3.500A) Processing sheet with id= 8, first strand: chain 'v' and resid 235 through 240 removed outlier: 3.965A pdb=" N ASP v 275 " --> pdb=" O VAL v 240 " (cutoff:3.500A) removed outlier: 6.570A pdb=" N LYS v 210 " --> pdb=" O ILE v 315 " (cutoff:3.500A) removed outlier: 3.814A pdb=" N ARG v 339 " --> pdb=" O GLY v 211 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N PHE v 215 " --> pdb=" O ILE v 341 " (cutoff:3.500A) Processing sheet with id= 9, first strand: chain 'L' and resid 55 through 58 Processing sheet with id= 10, first strand: chain 'L' and resid 68 through 73 Processing sheet with id= 11, first strand: chain 'L' and resid 194 through 198 removed outlier: 4.575A pdb=" N ASN L 194 " --> pdb=" O PRO L 227 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N CYS L 228 " --> pdb=" O ARG L 272 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N GLY L 174 " --> pdb=" O THR L 279 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ARG L 297 " --> pdb=" O GLY L 169 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N LEU L 171 " --> pdb=" O ARG L 297 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N ILE L 301 " --> pdb=" O TYR L 173 " (cutoff:3.500A) Processing sheet with id= 12, first strand: chain 'z' and resid 55 through 58 Processing sheet with id= 13, first strand: chain 'z' and resid 68 through 73 Processing sheet with id= 14, first strand: chain 'z' and resid 194 through 198 removed outlier: 4.575A pdb=" N ASN z 194 " --> pdb=" O PRO z 227 " (cutoff:3.500A) removed outlier: 4.188A pdb=" N CYS z 228 " --> pdb=" O ARG z 272 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N GLY z 174 " --> pdb=" O THR z 279 " (cutoff:3.500A) removed outlier: 3.604A pdb=" N ARG z 297 " --> pdb=" O GLY z 169 " (cutoff:3.500A) removed outlier: 3.909A pdb=" N LEU z 171 " --> pdb=" O ARG z 297 " (cutoff:3.500A) removed outlier: 4.161A pdb=" N ILE z 301 " --> pdb=" O TYR z 173 " (cutoff:3.500A) Processing sheet with id= 15, first strand: chain 'M' and resid 95 through 98 removed outlier: 3.976A pdb=" N GLU M 95 " --> pdb=" O VAL M 123 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N LEU M 97 " --> pdb=" O CYS M 121 " (cutoff:3.500A) removed outlier: 6.910A pdb=" N VAL M 123 " --> pdb=" O ILE M 94 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LYS M 125 " --> pdb=" O ASN M 92 " (cutoff:3.500A) Processing sheet with id= 16, first strand: chain 'M' and resid 246 through 251 removed outlier: 3.526A pdb=" N ILE M 282 " --> pdb=" O THR M 247 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N GLY M 227 " --> pdb=" O THR M 332 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ARG M 350 " --> pdb=" O GLY M 222 " (cutoff:3.500A) Processing sheet with id= 17, first strand: chain 'M' and resid 121 through 126 removed outlier: 3.588A pdb=" N ALA M 122 " --> pdb=" O LEU M 134 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N GLN M 130 " --> pdb=" O THR M 126 " (cutoff:3.500A) Processing sheet with id= 18, first strand: chain '0' and resid 95 through 98 removed outlier: 3.976A pdb=" N GLU 0 95 " --> pdb=" O VAL 0 123 " (cutoff:3.500A) removed outlier: 3.607A pdb=" N LEU 0 97 " --> pdb=" O CYS 0 121 " (cutoff:3.500A) removed outlier: 6.910A pdb=" N VAL 0 123 " --> pdb=" O ILE 0 94 " (cutoff:3.500A) removed outlier: 3.565A pdb=" N LYS 0 125 " --> pdb=" O ASN 0 92 " (cutoff:3.500A) Processing sheet with id= 19, first strand: chain '0' and resid 246 through 251 removed outlier: 3.526A pdb=" N ILE 0 282 " --> pdb=" O THR 0 247 " (cutoff:3.500A) removed outlier: 3.922A pdb=" N GLY 0 227 " --> pdb=" O THR 0 332 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ARG 0 350 " --> pdb=" O GLY 0 222 " (cutoff:3.500A) Processing sheet with id= 20, first strand: chain '0' and resid 121 through 126 removed outlier: 3.588A pdb=" N ALA 0 122 " --> pdb=" O LEU 0 134 " (cutoff:3.500A) removed outlier: 3.779A pdb=" N GLN 0 130 " --> pdb=" O THR 0 126 " (cutoff:3.500A) Processing sheet with id= 21, first strand: chain 'J' and resid 84 through 89 removed outlier: 6.534A pdb=" N GLY J 93 " --> pdb=" O VAL J 89 " (cutoff:3.500A) Processing sheet with id= 22, first strand: chain 'J' and resid 209 through 214 removed outlier: 3.510A pdb=" N LYS J 290 " --> pdb=" O SER J 244 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ALA J 294 " --> pdb=" O MET J 248 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LEU J 188 " --> pdb=" O MET J 293 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N GLY J 190 " --> pdb=" O THR J 295 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARG J 313 " --> pdb=" O GLY J 185 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N LEU J 187 " --> pdb=" O ARG J 313 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N TYR J 189 " --> pdb=" O ILE J 315 " (cutoff:3.500A) Processing sheet with id= 23, first strand: chain 'x' and resid 84 through 89 removed outlier: 6.534A pdb=" N GLY x 93 " --> pdb=" O VAL x 89 " (cutoff:3.500A) Processing sheet with id= 24, first strand: chain 'x' and resid 209 through 214 removed outlier: 3.510A pdb=" N LYS x 290 " --> pdb=" O SER x 244 " (cutoff:3.500A) removed outlier: 3.609A pdb=" N ALA x 294 " --> pdb=" O MET x 248 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N LEU x 188 " --> pdb=" O MET x 293 " (cutoff:3.500A) removed outlier: 3.699A pdb=" N GLY x 190 " --> pdb=" O THR x 295 " (cutoff:3.500A) removed outlier: 4.080A pdb=" N ARG x 313 " --> pdb=" O GLY x 185 " (cutoff:3.500A) removed outlier: 3.883A pdb=" N LEU x 187 " --> pdb=" O ARG x 313 " (cutoff:3.500A) removed outlier: 3.627A pdb=" N TYR x 189 " --> pdb=" O ILE x 315 " (cutoff:3.500A) Processing sheet with id= 25, first strand: chain 'K' and resid 109 through 112 removed outlier: 4.059A pdb=" N SER K 109 " --> pdb=" O SER K 105 " (cutoff:3.500A) removed outlier: 7.174A pdb=" N THR K 100 " --> pdb=" O VAL K 96 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N VAL K 96 " --> pdb=" O THR K 100 " (cutoff:3.500A) removed outlier: 5.541A pdb=" N GLY K 104 " --> pdb=" O PHE K 92 " (cutoff:3.500A) removed outlier: 5.617A pdb=" N PHE K 92 " --> pdb=" O GLY K 104 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ALA K 128 " --> pdb=" O PHE K 92 " (cutoff:3.500A) removed outlier: 4.113A pdb=" N SER K 129 " --> pdb=" O LEU K 143 " (cutoff:3.500A) Processing sheet with id= 26, first strand: chain 'K' and resid 225 through 230 removed outlier: 3.683A pdb=" N ALA K 226 " --> pdb=" O PRO K 259 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N ASP K 265 " --> pdb=" O VAL K 230 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N GLY K 206 " --> pdb=" O THR K 311 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ARG K 329 " --> pdb=" O GLY K 201 " (cutoff:3.500A) Processing sheet with id= 27, first strand: chain 'y' and resid 109 through 112 removed outlier: 4.059A pdb=" N SER y 109 " --> pdb=" O SER y 105 " (cutoff:3.500A) removed outlier: 7.174A pdb=" N THR y 100 " --> pdb=" O VAL y 96 " (cutoff:3.500A) removed outlier: 3.679A pdb=" N VAL y 96 " --> pdb=" O THR y 100 " (cutoff:3.500A) removed outlier: 5.541A pdb=" N GLY y 104 " --> pdb=" O PHE y 92 " (cutoff:3.500A) removed outlier: 5.617A pdb=" N PHE y 92 " --> pdb=" O GLY y 104 " (cutoff:3.500A) removed outlier: 3.592A pdb=" N ALA y 128 " --> pdb=" O PHE y 92 " (cutoff:3.500A) removed outlier: 4.113A pdb=" N SER y 129 " --> pdb=" O LEU y 143 " (cutoff:3.500A) Processing sheet with id= 28, first strand: chain 'y' and resid 225 through 230 removed outlier: 3.683A pdb=" N ALA y 226 " --> pdb=" O PRO y 259 " (cutoff:3.500A) removed outlier: 3.970A pdb=" N ASP y 265 " --> pdb=" O VAL y 230 " (cutoff:3.500A) removed outlier: 3.653A pdb=" N GLY y 206 " --> pdb=" O THR y 311 " (cutoff:3.500A) removed outlier: 3.829A pdb=" N ARG y 329 " --> pdb=" O GLY y 201 " (cutoff:3.500A) Processing sheet with id= 29, first strand: chain 'N' and resid 744 through 747 removed outlier: 5.588A pdb=" N ALA N 782 " --> pdb=" O SER N 747 " (cutoff:3.500A) Processing sheet with id= 30, first strand: chain 'N' and resid 899 through 902 removed outlier: 7.623A pdb=" N ARG N 899 " --> pdb=" O THR N 917 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N THR N 917 " --> pdb=" O ARG N 899 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N LYS N 915 " --> pdb=" O GLN N 901 " (cutoff:3.500A) Processing sheet with id= 31, first strand: chain '1' and resid 744 through 747 removed outlier: 5.588A pdb=" N ALA 1 782 " --> pdb=" O SER 1 747 " (cutoff:3.500A) Processing sheet with id= 32, first strand: chain '1' and resid 899 through 902 removed outlier: 7.623A pdb=" N ARG 1 899 " --> pdb=" O THR 1 917 " (cutoff:3.500A) removed outlier: 3.596A pdb=" N THR 1 917 " --> pdb=" O ARG 1 899 " (cutoff:3.500A) removed outlier: 3.854A pdb=" N LYS 1 915 " --> pdb=" O GLN 1 901 " (cutoff:3.500A) Processing sheet with id= 33, first strand: chain 'O' and resid 321 through 325 removed outlier: 6.526A pdb=" N LYS O 321 " --> pdb=" O THR O 334 " (cutoff:3.500A) Processing sheet with id= 34, first strand: chain '2' and resid 321 through 325 removed outlier: 6.526A pdb=" N LYS 2 321 " --> pdb=" O THR 2 334 " (cutoff:3.500A) Processing sheet with id= 35, first strand: chain 'P' and resid 404 through 407 Processing sheet with id= 36, first strand: chain '3' and resid 404 through 407 Processing sheet with id= 37, first strand: chain 'Q' and resid 375 through 380 removed outlier: 5.555A pdb=" N HIS Q 375 " --> pdb=" O PHE Q 388 " (cutoff:3.500A) Processing sheet with id= 38, first strand: chain '4' and resid 375 through 380 removed outlier: 5.555A pdb=" N HIS 4 375 " --> pdb=" O PHE 4 388 " (cutoff:3.500A) Processing sheet with id= 39, first strand: chain 'R' and resid 344 through 349 removed outlier: 5.020A pdb=" N HIS R 344 " --> pdb=" O ASN R 357 " (cutoff:3.500A) Processing sheet with id= 40, first strand: chain '5' and resid 344 through 349 removed outlier: 5.020A pdb=" N HIS 5 344 " --> pdb=" O ASN 5 357 " (cutoff:3.500A) Processing sheet with id= 41, first strand: chain 'S' and resid 448 through 452 removed outlier: 6.664A pdb=" N GLU S 448 " --> pdb=" O LYS S 461 " (cutoff:3.500A) Processing sheet with id= 42, first strand: chain '6' and resid 448 through 452 removed outlier: 6.664A pdb=" N GLU 6 448 " --> pdb=" O LYS 6 461 " (cutoff:3.500A) Processing sheet with id= 43, first strand: chain 'U' and resid 47 through 50 removed outlier: 5.117A pdb=" N SER U 140 " --> pdb=" O SER U 119 " (cutoff:3.500A) removed outlier: 8.043A pdb=" N SER U 119 " --> pdb=" O SER U 140 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N VAL U 120 " --> pdb=" O VAL U 92 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N VAL U 122 " --> pdb=" O TRP U 94 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N HIS U 96 " --> pdb=" O VAL U 122 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N ILE U 124 " --> pdb=" O HIS U 96 " (cutoff:3.500A) removed outlier: 5.975A pdb=" N VAL U 35 " --> pdb=" O THR U 97 " (cutoff:3.500A) removed outlier: 4.587A pdb=" N VAL U 36 " --> pdb=" O VAL U 56 " (cutoff:3.500A) Processing sheet with id= 44, first strand: chain '8' and resid 47 through 50 removed outlier: 5.117A pdb=" N SER 8 140 " --> pdb=" O SER 8 119 " (cutoff:3.500A) removed outlier: 8.043A pdb=" N SER 8 119 " --> pdb=" O SER 8 140 " (cutoff:3.500A) removed outlier: 4.147A pdb=" N VAL 8 120 " --> pdb=" O VAL 8 92 " (cutoff:3.500A) removed outlier: 3.566A pdb=" N VAL 8 122 " --> pdb=" O TRP 8 94 " (cutoff:3.500A) removed outlier: 3.758A pdb=" N HIS 8 96 " --> pdb=" O VAL 8 122 " (cutoff:3.500A) removed outlier: 3.870A pdb=" N ILE 8 124 " --> pdb=" O HIS 8 96 " (cutoff:3.500A) removed outlier: 5.975A pdb=" N VAL 8 35 " --> pdb=" O THR 8 97 " (cutoff:3.500A) removed outlier: 4.587A pdb=" N VAL 8 36 " --> pdb=" O VAL 8 56 " (cutoff:3.500A) Processing sheet with id= 45, first strand: chain 'V' and resid 65 through 69 removed outlier: 7.590A pdb=" N GLU V 29 " --> pdb=" O SER V 202 " (cutoff:3.500A) removed outlier: 3.943A pdb=" N THR V 204 " --> pdb=" O GLU V 29 " (cutoff:3.500A) Processing sheet with id= 46, first strand: chain '9' and resid 65 through 69 removed outlier: 7.590A pdb=" N GLU 9 29 " --> pdb=" O SER 9 202 " (cutoff:3.500A) removed outlier: 3.943A pdb=" N THR 9 204 " --> pdb=" O GLU 9 29 " (cutoff:3.500A) Processing sheet with id= 47, first strand: chain 'W' and resid 4 through 10 removed outlier: 3.524A pdb=" N ASN W 48 " --> pdb=" O GLU W 4 " (cutoff:3.500A) Processing sheet with id= 48, first strand: chain 'W' and resid 107 through 113 removed outlier: 3.675A pdb=" N GLY W 167 " --> pdb=" O VAL W 136 " (cutoff:3.500A) removed outlier: 3.795A pdb=" N ILE W 140 " --> pdb=" O HIS W 169 " (cutoff:3.500A) Processing sheet with id= 49, first strand: chain 'AA' and resid 4 through 10 removed outlier: 3.524A pdb=" N ASNAA 48 " --> pdb=" O GLUAA 4 " (cutoff:3.500A) Processing sheet with id= 50, first strand: chain 'AA' and resid 107 through 113 removed outlier: 3.675A pdb=" N GLYAA 167 " --> pdb=" O VALAA 136 " (cutoff:3.500A) removed outlier: 3.794A pdb=" N ILEAA 140 " --> pdb=" O HISAA 169 " (cutoff:3.500A) Processing sheet with id= 51, first strand: chain 'Z' and resid 830 through 833 removed outlier: 4.437A pdb=" N VAL Z 831 " --> pdb=" O GLY Z 896 " (cutoff:3.500A) Processing sheet with id= 52, first strand: chain 'AC' and resid 830 through 833 removed outlier: 4.437A pdb=" N VALAC 831 " --> pdb=" O GLYAC 896 " (cutoff:3.500A) Processing sheet with id= 53, first strand: chain 'B' and resid 68 through 72 removed outlier: 6.059A pdb=" N HIS B 68 " --> pdb=" O MET B 80 " (cutoff:3.500A) removed outlier: 6.337A pdb=" N ILE B 76 " --> pdb=" O ILE B 72 " (cutoff:3.500A) removed outlier: 3.550A pdb=" N MET B 138 " --> pdb=" O CYS B 154 " (cutoff:3.500A) removed outlier: 4.258A pdb=" N VAL B 151 " --> pdb=" O PHE B 163 " (cutoff:3.500A) removed outlier: 4.552A pdb=" N TYR B 159 " --> pdb=" O ASP B 155 " (cutoff:3.500A) Processing sheet with id= 54, first strand: chain 'B' and resid 165 through 169 Processing sheet with id= 55, first strand: chain 'h' and resid 68 through 72 removed outlier: 6.057A pdb=" N HIS h 68 " --> pdb=" O MET h 80 " (cutoff:3.500A) removed outlier: 6.338A pdb=" N ILE h 76 " --> pdb=" O ILE h 72 " (cutoff:3.500A) removed outlier: 3.505A pdb=" N MET h 138 " --> pdb=" O CYS h 154 " (cutoff:3.500A) removed outlier: 4.260A pdb=" N VAL h 151 " --> pdb=" O PHE h 163 " (cutoff:3.500A) removed outlier: 4.369A pdb=" N TYR h 159 " --> pdb=" O ASP h 155 " (cutoff:3.500A) Processing sheet with id= 56, first strand: chain 'h' and resid 165 through 169 Processing sheet with id= 57, first strand: chain 'C' and resid 64 through 67 removed outlier: 6.737A pdb=" N ILE C 71 " --> pdb=" O ILE C 67 " (cutoff:3.500A) removed outlier: 6.094A pdb=" N HIS C 70 " --> pdb=" O TRP C 138 " (cutoff:3.500A) removed outlier: 4.440A pdb=" N LEU C 145 " --> pdb=" O TRP C 157 " (cutoff:3.500A) removed outlier: 3.815A pdb=" N ALA C 153 " --> pdb=" O ASP C 149 " (cutoff:3.500A) Processing sheet with id= 58, first strand: chain 'C' and resid 159 through 163 removed outlier: 5.253A pdb=" N VAL C 209 " --> pdb=" O LEU C 220 " (cutoff:3.500A) removed outlier: 3.689A pdb=" N ASN C 213 " --> pdb=" O GLY C 216 " (cutoff:3.500A) Processing sheet with id= 59, first strand: chain 'i' and resid 64 through 67 removed outlier: 6.730A pdb=" N ILE i 71 " --> pdb=" O ILE i 67 " (cutoff:3.500A) removed outlier: 6.100A pdb=" N HIS i 70 " --> pdb=" O TRP i 138 " (cutoff:3.500A) removed outlier: 4.452A pdb=" N LEU i 145 " --> pdb=" O TRP i 157 " (cutoff:3.500A) removed outlier: 3.821A pdb=" N ALA i 153 " --> pdb=" O ASP i 149 " (cutoff:3.500A) Processing sheet with id= 60, first strand: chain 'i' and resid 159 through 163 removed outlier: 5.246A pdb=" N VAL i 209 " --> pdb=" O LEU i 220 " (cutoff:3.500A) removed outlier: 3.692A pdb=" N ASN i 213 " --> pdb=" O GLY i 216 " (cutoff:3.500A) Processing sheet with id= 61, first strand: chain 'D' and resid 64 through 68 removed outlier: 6.701A pdb=" N LYS D 64 " --> pdb=" O VAL D 76 " (cutoff:3.500A) removed outlier: 6.717A pdb=" N MET D 72 " --> pdb=" O LEU D 68 " (cutoff:3.500A) removed outlier: 5.898A pdb=" N ASP D 71 " --> pdb=" O TRP D 139 " (cutoff:3.500A) removed outlier: 4.223A pdb=" N LEU D 147 " --> pdb=" O TRP D 159 " (cutoff:3.500A) removed outlier: 3.817A pdb=" N ASN D 155 " --> pdb=" O ASP D 151 " (cutoff:3.500A) Processing sheet with id= 62, first strand: chain 'D' and resid 161 through 165 removed outlier: 4.814A pdb=" N THR D 33 " --> pdb=" O GLU D 48 " (cutoff:3.500A) removed outlier: 4.275A pdb=" N GLY D 42 " --> pdb=" O ALA D 39 " (cutoff:3.500A) removed outlier: 5.240A pdb=" N ILE D 213 " --> pdb=" O LEU D 228 " (cutoff:3.500A) Processing sheet with id= 63, first strand: chain 'j' and resid 64 through 68 removed outlier: 6.710A pdb=" N LYS j 64 " --> pdb=" O VAL j 76 " (cutoff:3.500A) removed outlier: 6.723A pdb=" N MET j 72 " --> pdb=" O LEU j 68 " (cutoff:3.500A) removed outlier: 5.901A pdb=" N ASP j 71 " --> pdb=" O TRP j 139 " (cutoff:3.500A) removed outlier: 4.217A pdb=" N LEU j 147 " --> pdb=" O TRP j 159 " (cutoff:3.500A) removed outlier: 3.810A pdb=" N ASN j 155 " --> pdb=" O ASP j 151 " (cutoff:3.500A) Processing sheet with id= 64, first strand: chain 'j' and resid 161 through 165 removed outlier: 4.804A pdb=" N THR j 33 " --> pdb=" O GLU j 48 " (cutoff:3.500A) removed outlier: 4.271A pdb=" N GLY j 42 " --> pdb=" O ALA j 39 " (cutoff:3.500A) removed outlier: 5.259A pdb=" N ILE j 213 " --> pdb=" O LEU j 228 " (cutoff:3.500A) Processing sheet with id= 65, first strand: chain 'E' and resid 62 through 65 removed outlier: 6.388A pdb=" N VAL E 69 " --> pdb=" O LEU E 65 " (cutoff:3.500A) removed outlier: 3.876A pdb=" N ALA E 131 " --> pdb=" O THR E 147 " (cutoff:3.500A) removed outlier: 4.400A pdb=" N LEU E 144 " --> pdb=" O TRP E 156 " (cutoff:3.500A) removed outlier: 4.312A pdb=" N THR E 152 " --> pdb=" O ASP E 148 " (cutoff:3.500A) Processing sheet with id= 66, first strand: chain 'E' and resid 158 through 162 removed outlier: 6.086A pdb=" N THR E 31 " --> pdb=" O GLU E 46 " (cutoff:3.500A) removed outlier: 5.105A pdb=" N ILE E 40 " --> pdb=" O GLY E 37 " (cutoff:3.500A) removed outlier: 5.138A pdb=" N LEU E 208 " --> pdb=" O LEU E 220 " (cutoff:3.500A) Processing sheet with id= 67, first strand: chain 'k' and resid 62 through 65 removed outlier: 6.369A pdb=" N VAL k 69 " --> pdb=" O LEU k 65 " (cutoff:3.500A) removed outlier: 3.867A pdb=" N ALA k 131 " --> pdb=" O THR k 147 " (cutoff:3.500A) removed outlier: 4.404A pdb=" N LEU k 144 " --> pdb=" O TRP k 156 " (cutoff:3.500A) removed outlier: 4.311A pdb=" N THR k 152 " --> pdb=" O ASP k 148 " (cutoff:3.500A) Processing sheet with id= 68, first strand: chain 'k' and resid 158 through 162 removed outlier: 6.125A pdb=" N THR k 31 " --> pdb=" O GLU k 46 " (cutoff:3.500A) removed outlier: 5.066A pdb=" N ILE k 40 " --> pdb=" O GLY k 37 " (cutoff:3.500A) removed outlier: 5.226A pdb=" N LEU k 208 " --> pdb=" O LEU k 220 " (cutoff:3.500A) Processing sheet with id= 69, first strand: chain 'F' and resid 66 through 70 removed outlier: 6.075A pdb=" N LYS F 66 " --> pdb=" O MET F 78 " (cutoff:3.500A) removed outlier: 6.544A pdb=" N ILE F 74 " --> pdb=" O ILE F 70 " (cutoff:3.500A) removed outlier: 6.151A pdb=" N HIS F 73 " --> pdb=" O VAL F 146 " (cutoff:3.500A) removed outlier: 4.224A pdb=" N LEU F 153 " --> pdb=" O CYS F 165 " (cutoff:3.500A) Processing sheet with id= 70, first strand: chain 'F' and resid 167 through 171 removed outlier: 5.412A pdb=" N THR F 36 " --> pdb=" O GLU F 51 " (cutoff:3.500A) removed outlier: 3.576A pdb=" N GLU F 51 " --> pdb=" O THR F 36 " (cutoff:3.500A) removed outlier: 8.162A pdb=" N ASN F 214 " --> pdb=" O LYS F 52 " (cutoff:3.500A) removed outlier: 5.325A pdb=" N LEU F 217 " --> pdb=" O PHE F 229 " (cutoff:3.500A) Processing sheet with id= 71, first strand: chain 'G' and resid 63 through 66 removed outlier: 6.490A pdb=" N ILE G 70 " --> pdb=" O VAL G 66 " (cutoff:3.500A) removed outlier: 5.823A pdb=" N HIS G 69 " --> pdb=" O TYR G 137 " (cutoff:3.500A) removed outlier: 4.198A pdb=" N ILE G 144 " --> pdb=" O CYS G 156 " (cutoff:3.500A) removed outlier: 4.129A pdb=" N ASN G 152 " --> pdb=" O CYS G 148 " (cutoff:3.500A) Processing sheet with id= 72, first strand: chain 'G' and resid 158 through 162 removed outlier: 4.542A pdb=" N ALA G 34 " --> pdb=" O LEU G 49 " (cutoff:3.500A) removed outlier: 6.156A pdb=" N ASN G 209 " --> pdb=" O LYS G 50 " (cutoff:3.500A) Processing sheet with id= 73, first strand: chain 'm' and resid 63 through 66 removed outlier: 6.485A pdb=" N ILE m 70 " --> pdb=" O VAL m 66 " (cutoff:3.500A) removed outlier: 5.822A pdb=" N HIS m 69 " --> pdb=" O TYR m 137 " (cutoff:3.500A) removed outlier: 4.197A pdb=" N ILE m 144 " --> pdb=" O CYS m 156 " (cutoff:3.500A) removed outlier: 4.157A pdb=" N ASN m 152 " --> pdb=" O CYS m 148 " (cutoff:3.500A) Processing sheet with id= 74, first strand: chain 'm' and resid 158 through 162 removed outlier: 4.579A pdb=" N ALA m 34 " --> pdb=" O LEU m 49 " (cutoff:3.500A) removed outlier: 5.444A pdb=" N ASN m 209 " --> pdb=" O LYS m 50 " (cutoff:3.500A) Processing sheet with id= 75, first strand: chain 'X' and resid 65 through 69 removed outlier: 6.404A pdb=" N ARG X 65 " --> pdb=" O VAL X 77 " (cutoff:3.500A) removed outlier: 6.410A pdb=" N VAL X 73 " --> pdb=" O VAL X 69 " (cutoff:3.500A) removed outlier: 4.521A pdb=" N LEU X 148 " --> pdb=" O TYR X 160 " (cutoff:3.500A) Processing sheet with id= 76, first strand: chain 'X' and resid 162 through 166 removed outlier: 4.567A pdb=" N THR X 35 " --> pdb=" O GLU X 50 " (cutoff:3.500A) Processing sheet with id= 77, first strand: chain 'n' and resid 65 through 69 removed outlier: 6.410A pdb=" N ARG n 65 " --> pdb=" O VAL n 77 " (cutoff:3.500A) removed outlier: 6.417A pdb=" N VAL n 73 " --> pdb=" O VAL n 69 " (cutoff:3.500A) removed outlier: 4.498A pdb=" N LEU n 148 " --> pdb=" O TYR n 160 " (cutoff:3.500A) Processing sheet with id= 78, first strand: chain 'n' and resid 162 through 166 removed outlier: 4.583A pdb=" N THR n 35 " --> pdb=" O GLU n 50 " (cutoff:3.500A) Processing sheet with id= 79, first strand: chain 'a' and resid 34 through 37 removed outlier: 6.442A pdb=" N ILE a 41 " --> pdb=" O ILE a 37 " (cutoff:3.500A) removed outlier: 5.828A pdb=" N ARG a 40 " --> pdb=" O TRP a 103 " (cutoff:3.500A) Processing sheet with id= 80, first strand: chain 'a' and resid 125 through 129 removed outlier: 6.056A pdb=" N THR a 2 " --> pdb=" O ASP a 17 " (cutoff:3.500A) removed outlier: 5.676A pdb=" N VAL a 173 " --> pdb=" O SER a 18 " (cutoff:3.500A) Processing sheet with id= 81, first strand: chain 'o' and resid 34 through 37 removed outlier: 6.425A pdb=" N ILE o 41 " --> pdb=" O ILE o 37 " (cutoff:3.500A) removed outlier: 5.821A pdb=" N ARG o 40 " --> pdb=" O TRP o 103 " (cutoff:3.500A) Processing sheet with id= 82, first strand: chain 'o' and resid 125 through 129 removed outlier: 6.078A pdb=" N THR o 2 " --> pdb=" O ASP o 17 " (cutoff:3.500A) removed outlier: 5.670A pdb=" N VAL o 173 " --> pdb=" O SER o 18 " (cutoff:3.500A) Processing sheet with id= 83, first strand: chain 'b' and resid 34 through 37 removed outlier: 6.474A pdb=" N ILE b 41 " --> pdb=" O ILE b 37 " (cutoff:3.500A) removed outlier: 5.910A pdb=" N ASN b 40 " --> pdb=" O VAL b 103 " (cutoff:3.500A) Processing sheet with id= 84, first strand: chain 'b' and resid 124 through 128 removed outlier: 5.985A pdb=" N THR b 2 " --> pdb=" O ASP b 17 " (cutoff:3.500A) removed outlier: 3.530A pdb=" N THR b 18 " --> pdb=" O ASN b 172 " (cutoff:3.500A) removed outlier: 6.036A pdb=" N ASN b 172 " --> pdb=" O THR b 18 " (cutoff:3.500A) removed outlier: 3.621A pdb=" N LYS b 182 " --> pdb=" O SER b 179 " (cutoff:3.500A) Processing sheet with id= 85, first strand: chain 'p' and resid 34 through 37 removed outlier: 6.472A pdb=" N ILE p 41 " --> pdb=" O ILE p 37 " (cutoff:3.500A) removed outlier: 5.879A pdb=" N ASN p 40 " --> pdb=" O VAL p 103 " (cutoff:3.500A) Processing sheet with id= 86, first strand: chain 'p' and resid 124 through 128 removed outlier: 5.987A pdb=" N THR p 2 " --> pdb=" O ASP p 17 " (cutoff:3.500A) removed outlier: 6.054A pdb=" N ASN p 172 " --> pdb=" O THR p 18 " (cutoff:3.500A) removed outlier: 3.615A pdb=" N LYS p 182 " --> pdb=" O SER p 179 " (cutoff:3.500A) Processing sheet with id= 87, first strand: chain 'c' and resid 42 through 45 removed outlier: 5.441A pdb=" N LEU c 49 " --> pdb=" O MET c 45 " (cutoff:3.500A) removed outlier: 6.305A pdb=" N ARG c 48 " --> pdb=" O LEU c 112 " (cutoff:3.500A) removed outlier: 4.178A pdb=" N ALA c 54 " --> pdb=" O GLU c 106 " (cutoff:3.500A) Processing sheet with id= 88, first strand: chain 'c' and resid 136 through 140 removed outlier: 5.791A pdb=" N ALA c 10 " --> pdb=" O ASP c 25 " (cutoff:3.500A) removed outlier: 6.496A pdb=" N GLY c 184 " --> pdb=" O ARG c 26 " (cutoff:3.500A) removed outlier: 4.470A pdb=" N VAL c 185 " --> pdb=" O LEU c 200 " (cutoff:3.500A) removed outlier: 3.766A pdb=" N LYS c 194 " --> pdb=" O GLU c 191 " (cutoff:3.500A) Processing sheet with id= 89, first strand: chain 'q' and resid 42 through 45 removed outlier: 5.430A pdb=" N LEU q 49 " --> pdb=" O MET q 45 " (cutoff:3.500A) removed outlier: 6.298A pdb=" N ARG q 48 " --> pdb=" O LEU q 112 " (cutoff:3.500A) removed outlier: 4.180A pdb=" N ALA q 54 " --> pdb=" O GLU q 106 " (cutoff:3.500A) Processing sheet with id= 90, first strand: chain 'q' and resid 136 through 140 removed outlier: 5.791A pdb=" N ALA q 10 " --> pdb=" O ASP q 25 " (cutoff:3.500A) removed outlier: 6.492A pdb=" N GLY q 184 " --> pdb=" O ARG q 26 " (cutoff:3.500A) removed outlier: 4.463A pdb=" N VAL q 185 " --> pdb=" O LEU q 200 " (cutoff:3.500A) removed outlier: 3.767A pdb=" N LYS q 194 " --> pdb=" O GLU q 191 " (cutoff:3.500A) Processing sheet with id= 91, first strand: chain 'd' and resid 35 through 38 removed outlier: 6.465A pdb=" N ILE d 42 " --> pdb=" O MET d 38 " (cutoff:3.500A) removed outlier: 5.750A pdb=" N LYS d 41 " --> pdb=" O TYR d 107 " (cutoff:3.500A) removed outlier: 7.143A pdb=" N HIS d 99 " --> pdb=" O GLU d 49 " (cutoff:3.500A) Processing sheet with id= 92, first strand: chain 'd' and resid 129 through 132 removed outlier: 6.015A pdb=" N TYR d 3 " --> pdb=" O ASP d 18 " (cutoff:3.500A) removed outlier: 6.964A pdb=" N THR d 177 " --> pdb=" O ARG d 19 " (cutoff:3.500A) Processing sheet with id= 93, first strand: chain 'r' and resid 35 through 38 removed outlier: 6.455A pdb=" N ILE r 42 " --> pdb=" O MET r 38 " (cutoff:3.500A) removed outlier: 5.739A pdb=" N LYS r 41 " --> pdb=" O TYR r 107 " (cutoff:3.500A) removed outlier: 7.127A pdb=" N HIS r 99 " --> pdb=" O GLU r 49 " (cutoff:3.500A) Processing sheet with id= 94, first strand: chain 'r' and resid 129 through 132 removed outlier: 6.022A pdb=" N TYR r 3 " --> pdb=" O ASP r 18 " (cutoff:3.500A) removed outlier: 6.950A pdb=" N THR r 177 " --> pdb=" O ARG r 19 " (cutoff:3.500A) Processing sheet with id= 95, first strand: chain 'e' and resid 34 through 37 removed outlier: 6.343A pdb=" N LEU e 41 " --> pdb=" O ILE e 37 " (cutoff:3.500A) removed outlier: 4.534A pdb=" N MET e 100 " --> pdb=" O THR e 44 " (cutoff:3.500A) removed outlier: 4.472A pdb=" N ASN e 119 " --> pdb=" O ASP e 115 " (cutoff:3.500A) Processing sheet with id= 96, first strand: chain 'e' and resid 125 through 129 removed outlier: 6.070A pdb=" N THR e 2 " --> pdb=" O ASP e 17 " (cutoff:3.500A) removed outlier: 5.761A pdb=" N ALA e 173 " --> pdb=" O SER e 18 " (cutoff:3.500A) removed outlier: 6.630A pdb=" N LEU e 176 " --> pdb=" O VAL e 187 " (cutoff:3.500A) Processing sheet with id= 97, first strand: chain 's' and resid 34 through 37 removed outlier: 6.346A pdb=" N LEU s 41 " --> pdb=" O ILE s 37 " (cutoff:3.500A) removed outlier: 4.538A pdb=" N MET s 100 " --> pdb=" O THR s 44 " (cutoff:3.500A) removed outlier: 4.469A pdb=" N ASN s 119 " --> pdb=" O ASP s 115 " (cutoff:3.500A) Processing sheet with id= 98, first strand: chain 's' and resid 125 through 129 removed outlier: 6.084A pdb=" N THR s 2 " --> pdb=" O ASP s 17 " (cutoff:3.500A) removed outlier: 5.764A pdb=" N ALA s 173 " --> pdb=" O SER s 18 " (cutoff:3.500A) removed outlier: 6.636A pdb=" N LEU s 176 " --> pdb=" O VAL s 187 " (cutoff:3.500A) Processing sheet with id= 99, first strand: chain 'f' and resid 43 through 46 removed outlier: 6.691A pdb=" N THR f 50 " --> pdb=" O LEU f 46 " (cutoff:3.500A) removed outlier: 6.808A pdb=" N LYS f 49 " --> pdb=" O LEU f 113 " (cutoff:3.500A) removed outlier: 4.247A pdb=" N ASN f 108 " --> pdb=" O PHE f 124 " (cutoff:3.500A) removed outlier: 3.687A pdb=" N VAL f 121 " --> pdb=" O ASP f 133 " (cutoff:3.500A) Processing sheet with id=100, first strand: chain 'f' and resid 135 through 139 removed outlier: 6.150A pdb=" N GLY f 9 " --> pdb=" O ARG f 28 " (cutoff:3.500A) removed outlier: 7.480A pdb=" N ARG f 28 " --> pdb=" O GLY f 9 " (cutoff:3.500A) removed outlier: 5.833A pdb=" N THR f 11 " --> pdb=" O ASP f 26 " (cutoff:3.500A) removed outlier: 6.045A pdb=" N ALA f 192 " --> pdb=" O THR f 27 " (cutoff:3.500A) Processing sheet with id=101, first strand: chain 't' and resid 43 through 46 removed outlier: 6.696A pdb=" N THR t 50 " --> pdb=" O LEU t 46 " (cutoff:3.500A) removed outlier: 6.802A pdb=" N LYS t 49 " --> pdb=" O LEU t 113 " (cutoff:3.500A) removed outlier: 4.226A pdb=" N ASN t 108 " --> pdb=" O PHE t 124 " (cutoff:3.500A) removed outlier: 3.680A pdb=" N VAL t 121 " --> pdb=" O ASP t 133 " (cutoff:3.500A) Processing sheet with id=102, first strand: chain 't' and resid 135 through 139 removed outlier: 6.153A pdb=" N GLY t 9 " --> pdb=" O ARG t 28 " (cutoff:3.500A) removed outlier: 7.489A pdb=" N ARG t 28 " --> pdb=" O GLY t 9 " (cutoff:3.500A) removed outlier: 5.837A pdb=" N THR t 11 " --> pdb=" O ASP t 26 " (cutoff:3.500A) removed outlier: 6.047A pdb=" N ALA t 192 " --> pdb=" O THR t 27 " (cutoff:3.500A) Processing sheet with id=103, first strand: chain 'g' and resid 41 through 45 removed outlier: 6.183A pdb=" N ARG g 41 " --> pdb=" O ALA g 53 " (cutoff:3.500A) removed outlier: 3.521A pdb=" N THR g 49 " --> pdb=" O VAL g 45 " (cutoff:3.500A) removed outlier: 5.128A pdb=" N SER g 48 " --> pdb=" O TYR g 115 " (cutoff:3.500A) removed outlier: 4.690A pdb=" N LEU g 122 " --> pdb=" O ALA g 134 " (cutoff:3.500A) removed outlier: 4.670A pdb=" N VAL g 130 " --> pdb=" O ASP g 126 " (cutoff:3.500A) Processing sheet with id=104, first strand: chain 'g' and resid 136 through 139 removed outlier: 4.000A pdb=" N VAL g 11 " --> pdb=" O THR g 139 " (cutoff:3.500A) removed outlier: 3.729A pdb=" N ILE g 189 " --> pdb=" O GLU g 200 " (cutoff:3.500A) Processing sheet with id=105, first strand: chain 'l' and resid 66 through 69 removed outlier: 6.106A pdb=" N LYS l 66 " --> pdb=" O MET l 78 " (cutoff:3.500A) Processing sheet with id=106, first strand: chain 'l' and resid 217 through 220 removed outlier: 5.356A pdb=" N LEU l 217 " --> pdb=" O PHE l 229 " (cutoff:3.500A) Processing sheet with id=107, first strand: chain 'u' and resid 41 through 45 removed outlier: 6.182A pdb=" N ARG u 41 " --> pdb=" O ALA u 53 " (cutoff:3.500A) removed outlier: 3.519A pdb=" N THR u 49 " --> pdb=" O VAL u 45 " (cutoff:3.500A) removed outlier: 5.118A pdb=" N SER u 48 " --> pdb=" O TYR u 115 " (cutoff:3.500A) removed outlier: 4.678A pdb=" N LEU u 122 " --> pdb=" O ALA u 134 " (cutoff:3.500A) removed outlier: 4.666A pdb=" N VAL u 130 " --> pdb=" O ASP u 126 " (cutoff:3.500A) Processing sheet with id=108, first strand: chain 'u' and resid 136 through 139 removed outlier: 3.981A pdb=" N VAL u 11 " --> pdb=" O THR u 139 " (cutoff:3.500A) removed outlier: 3.736A pdb=" N ILE u 189 " --> pdb=" O GLU u 200 " (cutoff:3.500A) 8362 hydrogen bonds defined for protein. 24948 hydrogen bond angles defined for protein. Restraints generated for nucleic acids: 0 hydrogen bonds 0 hydrogen bond angles 0 basepair planarities 0 basepair parallelities 0 stacking parallelities Total time for adding SS restraints: 91.12 Time building geometry restraints manager: 50.19 seconds NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Histogram of bond lengths: 1.14 - 1.28: 24537 1.28 - 1.43: 34274 1.43 - 1.58: 84752 1.58 - 1.72: 114 1.72 - 1.87: 1057 Bond restraints: 144734 Sorted by residual: bond pdb=" CD GLU j 70 " pdb=" OE2 GLU j 70 " ideal model delta sigma weight residual 1.249 1.740 -0.491 1.90e-02 2.77e+03 6.69e+02 bond pdb=" CD GLU D 70 " pdb=" OE2 GLU D 70 " ideal model delta sigma weight residual 1.249 1.506 -0.257 1.90e-02 2.77e+03 1.83e+02 bond pdb=" CD GLU D 70 " pdb=" OE1 GLU D 70 " ideal model delta sigma weight residual 1.249 1.498 -0.249 1.90e-02 2.77e+03 1.72e+02 bond pdb=" C GLN 4 48 " pdb=" N SER 4 49 " ideal model delta sigma weight residual 1.335 1.506 -0.171 1.32e-02 5.74e+03 1.67e+02 bond pdb=" CA GLU P 168 " pdb=" C GLU P 168 " ideal model delta sigma weight residual 1.520 1.460 0.059 4.80e-03 4.34e+04 1.53e+02 ... (remaining 144729 not shown) Histogram of bond angle deviations from ideal: 88.74 - 100.91: 368 100.91 - 113.09: 80479 113.09 - 125.26: 113715 125.26 - 137.43: 1414 137.43 - 149.61: 25 Bond angle restraints: 196001 Sorted by residual: angle pdb=" CA GLU 3 168 " pdb=" C GLU 3 168 " pdb=" O GLU 3 168 " ideal model delta sigma weight residual 119.77 127.90 -8.13 5.70e-01 3.08e+00 2.04e+02 angle pdb=" CA GLU P 168 " pdb=" C GLU P 168 " pdb=" O GLU P 168 " ideal model delta sigma weight residual 119.77 127.90 -8.13 5.70e-01 3.08e+00 2.04e+02 angle pdb=" N ASP M 169 " pdb=" CA ASP M 169 " pdb=" C ASP M 169 " ideal model delta sigma weight residual 110.64 130.95 -20.31 1.48e+00 4.57e-01 1.88e+02 angle pdb=" N ASP 0 169 " pdb=" CA ASP 0 169 " pdb=" C ASP 0 169 " ideal model delta sigma weight residual 110.64 130.95 -20.31 1.48e+00 4.57e-01 1.88e+02 angle pdb=" CB ASP w 142 " pdb=" CG ASP w 142 " pdb=" OD1 ASP w 142 " ideal model delta sigma weight residual 118.40 149.61 -31.21 2.30e+00 1.89e-01 1.84e+02 ... (remaining 195996 not shown) Histogram of dihedral angle deviations from ideal: 0.00 - 29.71: 83649 29.71 - 59.42: 4142 59.42 - 89.14: 257 89.14 - 118.85: 23 118.85 - 148.56: 40 Dihedral angle restraints: 88111 sinusoidal: 30243 harmonic: 57868 Sorted by residual: dihedral pdb=" CA LEUAA 22 " pdb=" C LEUAA 22 " pdb=" N PROAA 23 " pdb=" CA PROAA 23 " ideal model delta harmonic sigma weight residual -180.00 -47.10 -132.90 0 5.00e+00 4.00e-02 7.07e+02 dihedral pdb=" CA LEU W 22 " pdb=" C LEU W 22 " pdb=" N PRO W 23 " pdb=" CA PRO W 23 " ideal model delta harmonic sigma weight residual -180.00 -47.10 -132.90 0 5.00e+00 4.00e-02 7.07e+02 dihedral pdb=" CA LYS 4 32 " pdb=" C LYS 4 32 " pdb=" N ARG 4 33 " pdb=" CA ARG 4 33 " ideal model delta harmonic sigma weight residual -180.00 -47.91 -132.09 0 5.00e+00 4.00e-02 6.98e+02 ... (remaining 88108 not shown) Histogram of chiral volume deviations from ideal: 0.000 - 0.356: 22954 0.356 - 0.711: 46 0.711 - 1.067: 0 1.067 - 1.422: 0 1.422 - 1.778: 2 Chirality restraints: 23002 Sorted by residual: chirality pdb=" CA ALA O 263 " pdb=" N ALA O 263 " pdb=" C ALA O 263 " pdb=" CB ALA O 263 " both_signs ideal model delta sigma weight residual False 2.48 0.71 1.78 2.00e-01 2.50e+01 7.90e+01 chirality pdb=" CA ALA 2 263 " pdb=" N ALA 2 263 " pdb=" C ALA 2 263 " pdb=" CB ALA 2 263 " both_signs ideal model delta sigma weight residual False 2.48 0.71 1.78 2.00e-01 2.50e+01 7.90e+01 chirality pdb=" CA VAL H 166 " pdb=" N VAL H 166 " pdb=" C VAL H 166 " pdb=" CB VAL H 166 " both_signs ideal model delta sigma weight residual False 2.44 1.83 0.61 2.00e-01 2.50e+01 9.35e+00 ... (remaining 22999 not shown) Planarity restraints: 25421 Sorted by residual: delta sigma weight rms_deltas residual plane pdb=" CA SER I 299 " 0.040 2.00e-02 2.50e+03 8.45e-02 7.15e+01 pdb=" C SER I 299 " -0.146 2.00e-02 2.50e+03 pdb=" O SER I 299 " 0.057 2.00e-02 2.50e+03 pdb=" N GLY I 300 " 0.049 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CA SER w 299 " 0.040 2.00e-02 2.50e+03 8.45e-02 7.15e+01 pdb=" C SER w 299 " -0.146 2.00e-02 2.50e+03 pdb=" O SER w 299 " 0.057 2.00e-02 2.50e+03 pdb=" N GLY w 300 " 0.049 2.00e-02 2.50e+03 delta sigma weight rms_deltas residual plane pdb=" CA SER K 149 " -0.039 2.00e-02 2.50e+03 8.10e-02 6.56e+01 pdb=" C SER K 149 " 0.140 2.00e-02 2.50e+03 pdb=" O SER K 149 " -0.055 2.00e-02 2.50e+03 pdb=" N SER K 150 " -0.046 2.00e-02 2.50e+03 ... (remaining 25418 not shown) Histogram of nonbonded interaction distances: 1.11 - 1.87: 128 1.87 - 2.63: 5251 2.63 - 3.39: 213221 3.39 - 4.14: 351353 4.14 - 4.90: 623093 Nonbonded interactions: 1193046 Sorted by model distance: nonbonded pdb=" NE2 HIS z 323 " pdb=" CD2 PHE z 361 " model vdw 1.114 3.420 nonbonded pdb=" NE2 HIS L 323 " pdb=" CD2 PHE L 361 " model vdw 1.114 3.420 nonbonded pdb=" O VAL K 103 " pdb=" OD1 ASN K 110 " model vdw 1.476 3.040 nonbonded pdb=" O VAL y 103 " pdb=" OD1 ASN y 110 " model vdw 1.476 3.040 nonbonded pdb=" O GLN J 221 " pdb=" O GLY J 225 " model vdw 1.481 3.040 ... (remaining 1193041 not shown) NOTE: a complete listing of the restraints can be obtained by requesting output of .geo file. Find NCS groups from input model Found NCS groups: ncs_group { reference = chain '0' selection = chain 'M' } ncs_group { reference = chain '1' selection = chain 'N' } ncs_group { reference = (chain '2' and (resid 3 through 247 or (resid 248 and (name N or name CA or name \ C or name O or name CB )) or resid 249 through 376)) selection = chain 'O' } ncs_group { reference = chain '3' selection = (chain 'P' and (resid 5 through 92 or (resid 93 through 112 and (name N or name \ CA or name C or name O or name CB )) or resid 117 through 454)) } ncs_group { reference = chain '4' selection = chain 'Q' } ncs_group { reference = (chain '5' and (resid 14 through 49 or (resid 50 through 51 and (name N or name \ CA or name C or name O or name CB )) or resid 52 through 389)) selection = chain 'R' } ncs_group { reference = (chain '6' and (resid 57 through 200 or (resid 201 through 202 and (name N or na \ me CA or name C or name O or name CB )) or resid 203 through 221 or (resid 222 t \ hrough 225 and (name N or name CA or name C or name O or name CB )) or resid 226 \ through 525)) selection = chain 'S' } ncs_group { reference = chain '7' selection = chain 'T' } ncs_group { reference = chain '8' selection = chain 'U' } ncs_group { reference = chain '9' selection = (chain 'V' and (resid 28 through 306 or (resid 307 and (name N or name CA or nam \ e C or name O or name CB )) or resid 308 through 310)) } ncs_group { reference = chain 'AA' selection = chain 'W' } ncs_group { reference = chain 'AB' selection = chain 'Y' } ncs_group { reference = chain 'AC' selection = chain 'Z' } ncs_group { reference = (chain 'B' and (resid 2 through 61 or (resid 62 through 63 and (name N or name C \ A or name C or name O or name CB )) or resid 64 through 245)) selection = (chain 'h' and (resid 2 through 45 or (resid 46 and (name N or name CA or name C \ or name O or name CB )) or resid 47 through 54 or (resid 55 and (name N or name \ CA or name C or name O or name CB )) or resid 56 through 58 or (resid 59 and (n \ ame N or name CA or name C or name O or name CB )) or resid 60 through 245)) } ncs_group { reference = chain 'C' selection = (chain 'i' and (resid 1 through 191 or (resid 192 and (name N or name CA or name \ C or name O or name CB )) or resid 193 through 194 or (resid 195 and (name N or \ name CA or name C or name O or name CB )) or resid 196 through 231)) } ncs_group { reference = (chain 'D' and (resid 2 through 196 or (resid 197 and (name N or name CA or name \ C or name O or name CB )) or resid 198 through 251)) selection = chain 'j' } ncs_group { reference = (chain 'E' and (resid 2 through 42 or (resid 43 and (name N or name CA or name C \ or name O or name CB )) or resid 44 through 53 or (resid 54 and (name N or name \ CA or name C or name O or name CB )) or resid 55 or (resid 56 and (name N or na \ me CA or name C or name O or name CB )) or resid 57 through 60 or (resid 61 and \ (name N or name CA or name C or name O or name CB )) or resid 62 through 67 or ( \ resid 68 and (name N or name CA or name C or name O or name CB )) or resid 69 th \ rough 83 or (resid 84 and (name N or name CA or name C or name O or name CB )) o \ r resid 85 through 136 or (resid 137 through 138 and (name N or name CA or name \ C or name O or name CB )) or resid 139 through 187 or (resid 188 through 189 and \ (name N or name CA or name C or name O or name CB )) or resid 190 through 210 o \ r (resid 211 through 213 and (name N or name CA or name C or name O or name CB ) \ ) or resid 214 through 223 or (resid 224 through 227 and (name N or name CA or n \ ame C or name O or name CB )) or resid 228 through 230 or (resid 231 through 244 \ and (name N or name CA or name C or name O or name CB )))) selection = (chain 'k' and (resid 2 through 52 or (resid 53 through 54 and (name N or name C \ A or name C or name O or name CB )) or resid 55 through 135 or (resid 136 throug \ h 138 and (name N or name CA or name C or name O or name CB )) or resid 139 thro \ ugh 244)) } ncs_group { reference = (chain 'F' and ((resid 8 and (name N or name CA or name C or name O or name CB ) \ ) or (resid 9 and (name N or name CA or name C or name CB or name CG or name OD1 \ or name OD2)) or resid 10 or (resid 11 and (name N or name CA or name C )) or r \ esid 12 through 14 or (resid 15 and (name N or name CA or name C or name CB or n \ ame CG or name CD1 or name CD2 or name CE1 or name CE2 or name CZ )) or resid 16 \ or (resid 17 and (name N or name CA or name C or name CB or name CG or name CD \ )) or resid 18 through 32 or (resid 33 and (name N or name CA or name C or name \ CB or name CG or name CD1 or name CD2)) or resid 34 through 44 or (resid 45 and \ (name N or name CA or name C )) or resid 46 through 48 or (resid 49 and (name N \ or name CA or name C or name CB )) or resid 50 or (resid 51 and (name N or name \ CA or name C or name CB or name CG or name CD or name OE1 or name OE2)) or resid \ 52 or (resid 53 and (name N or name CA or name C or name CB or name CG or name \ CD or name NE or name CZ or name NH1 or name NH2)) or resid 54 or (resid 55 and \ (name N or name CA or name C or name CB or name OG1 or name CG2)) or resid 56 th \ rough 57 or (resid 58 and (name N or name CA or name C or name CB or name CG or \ name CD1 or name CD2)) or resid 59 through 60 or (resid 61 and (name N or name C \ A or name C or name CB or name CG or name CD )) or resid 62 through 64 or (resid \ 65 and (name N or name CA or name C or name CB or name CG or name CD or name OE \ 1 or name OE2)) or resid 66 through 73 or (resid 74 and (name N or name CA or na \ me C or name CB or name CG1 or name CG2 or name CD1)) or resid 75 through 85 or \ (resid 86 and (name N or name CA or name C or name CB )) or resid 87 through 100 \ or (resid 101 and (name N or name CA or name C or name CB or name CG or name CD \ 1 or name CD2 or name CE1 or name CE2 or name CZ )) or resid 102 through 110 or \ (resid 111 and (name N or name CA or name C or name CB or name OG )) or resid 11 \ 2 through 113 or (resid 114 and (name N or name CA or name C or name CB or name \ CG or name CD or name OE1 or name NE2)) or resid 115 through 118 or (resid 119 a \ nd (name N or name CA or name C or name CB or name CG or name CD1 or name CD2)) \ or (resid 120 and (name N or name CA or name C or name CB )) or resid 121 throug \ h 123 or (resid 124 and (name N or name CA or name C )) or resid 125 or (resid 1 \ 26 and (name N or name CA or name C or name CB or name CG or name CD or name OE1 \ or name OE2)) or (resid 127 and (name N or name CA or name C or name CB or name \ CG or name OD1 or name OD2)) or resid 128 through 129 or (resid 130 and (name N \ or name CA or name C or name CB or name CG or name CD )) or (resid 131 and (nam \ e N or name CA or name C )) or resid 132 through 137 or (resid 138 and (name N o \ r name CA or name C )) or resid 139 through 144 or (resid 145 and (name N or nam \ e CA or name C )) or resid 146 through 155 or (resid 156 and (name N or name CA \ or name C or name CB or name CG or name SD or name CE )) or resid 157 or (resid \ 158 and (name N or name CA or name C or name CB or name CG or name CD )) or (res \ id 159 and (name N or name CA or name C or name CB or name OG )) or (resid 160 a \ nd (name N or name CA or name C )) or resid 161 through 169 or (resid 170 and (n \ ame N or name CA or name C or name CB or name CG1 or name CG2 or name CD1)) or r \ esid 171 through 185 or (resid 186 and (name N or name CA or name C or name CB o \ r name CG or name ND1 or name CD2 or name CE1 or name NE2)) or resid 187 or (res \ id 188 and (name N or name CA or name C or name CB or name OG )) or resid 189 or \ (resid 190 and (name N or name CA or name C or name CB or name OG1 or name CG2) \ ) or (resid 191 and (name N or name CA or name C or name CB or name CG or name C \ D1 or name CD2)) or resid 192 or (resid 193 and (name N or name CA or name C or \ name CB or name CG or name CD or name OE1 or name OE2)) or resid 194 through 206 \ or (resid 207 and (name N or name CA or name C or name CB or name CG or name CD \ or name OE1 or name OE2)) or (resid 208 through 209 and (name N or name CA or n \ ame C )) or (resid 210 and (name N or name CA or name C or name CB or name CG or \ name CD1 or name CD2)) or resid 211 through 241)) selection = (chain 'l' and (resid 8 through 207 or (resid 208 through 209 and (name N or nam \ e CA or name C )) or resid 210 through 241)) } ncs_group { reference = chain 'G' selection = chain 'm' } ncs_group { reference = chain 'H' selection = chain 'v' } ncs_group { reference = chain 'I' selection = chain 'w' } ncs_group { reference = chain 'J' selection = chain 'x' } ncs_group { reference = chain 'K' selection = chain 'y' } ncs_group { reference = chain 'L' selection = chain 'z' } ncs_group { reference = chain 'X' selection = chain 'n' } ncs_group { reference = chain 'a' selection = chain 'o' } ncs_group { reference = chain 'b' selection = chain 'p' } ncs_group { reference = chain 'c' selection = chain 'q' } ncs_group { reference = chain 'd' selection = chain 'r' } ncs_group { reference = chain 'e' selection = (chain 's' and (resid 1 through 184 or (resid 185 and (name N or name CA or name \ C or name O or name CB )) or resid 186 through 201)) } ncs_group { reference = chain 'f' selection = chain 't' } ncs_group { reference = (chain 'g' and (resid 1 through 169 or (resid 170 and (name N or name CA or name \ C or name O or name CB )) or resid 171 through 216)) selection = (chain 'u' and (resid 1 through 43 or (resid 44 and (name N or name CA or name C \ or name O or name CB )) or resid 45 through 216)) } Set up NCS constraints No NCS constraints will be used in refinement. Set refine NCS operators Adjust number of macro_cycles Number of macro_cycles: 10 Reset NCS operators Extract rigid body selections Check and reset occupancies Occupancies: min=1.00 max=1.00 mean=1.00 Load rotamer database and sin/cos tables Set ADP refinement strategy ADPs will be refined as group one per residue Make a string to write initial .geo file Internal consistency checks Time: Set random seed: 0.000 Set model cs if undefined: 0.000 Decide on map wrapping: 0.000 Normalize map: mean=0, sd=1: 6.530 Set stop_for_unknowns flag: 0.000 Assert model is a single copy model: 0.000 Assert all atoms have isotropic ADPs: 0.010 Construct map_model_manager: 0.180 Extract box with map and model: 31.780 Check model and map are aligned: 1.580 Set scattering table: 0.960 Process input model: 374.180 Find NCS groups from input model: 12.560 Set up NCS constraints: 2.330 Set refine NCS operators: 0.000 Adjust number of macro_cycles: 0.000 Reset NCS operators: 0.000 Extract rigid body selections: 0.000 Check and reset occupancies: 0.030 Load rotamer database and sin/cos tables:2.950 Set ADP refinement strategy: 0.000 Make a string to write initial .geo file:0.000 Internal consistency checks: 0.000 Total: 433.090 ------------------------------------------------------------------------------- Set refinement monitor ********************** ------------------------------------------------------------------------------- Setup refinement engine *********************** ------------------------------------------------------------------------------- Overall statistics ****************** model-to-map fit, CC_mask: 0.7560 moved from start: 0.0000 Geometry Restraints Library: GeoStd + Monomer Library + CDL v1.2 Deviations from Ideal Values - rmsd, rmsZ for bonds and angles. Bond : 0.013 0.491 144734 Z= 0.850 Angle : 1.529 34.424 196001 Z= 0.945 Chirality : 0.082 1.778 23002 Planarity : 0.009 0.225 25421 Dihedral : 16.772 148.560 50663 Min Nonbonded Distance : 1.114 Molprobity Statistics. All-atom Clashscore : 63.72 Ramachandran Plot: Outliers : 4.95 % Allowed : 13.21 % Favored : 81.84 % Rotamer: Outliers : 11.56 % Allowed : 9.72 % Favored : 78.72 % Cbeta Deviations : 0.20 % Peptide Plane: Cis-proline : 0.00 % Cis-general : 0.00 % Twisted Proline : 2.80 % Twisted General : 0.32 % Rama-Z (Ramachandran plot Z-score): Interpretation: bad |Rama-Z| > 3; suspicious 2 < |Rama-Z| < 3; good |Rama-Z| < 2. Scores for whole/helix/sheet/loop are scaled independently; therefore, the values are not related in a simple manner. whole: -4.66 (0.05), residues: 19717 helix: -3.14 (0.04), residues: 9292 sheet: -1.36 (0.10), residues: 2410 loop : -3.47 (0.06), residues: 8015 Max deviation from planes: Type MaxDev MeanDev LineInFile TRP 0.058 0.007 TRP h 101 HIS 0.030 0.004 HIS v 358 PHE 0.059 0.007 PHE l 22 TYR 0.070 0.008 TYR q 50 ARG 0.058 0.003 ARG a 166 *********************** REFINEMENT MACRO_CYCLE 1 OF 10 ************************ ------------------------------------------------------------------------------- Update Rama plot phi/psi targets (oldfield only) ************************************************ 39434 Ramachandran restraints generated. 19717 Oldfield, 0 Emsley, 19717 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Re-set Ramachandran plot restraints *********************************** favored: oldfield allowed: oldfield outlier: oldfield 39434 Ramachandran restraints generated. 19717 Oldfield, 0 Emsley, 19717 emsley8k and 0 Phi/Psi/2. ------------------------------------------------------------------------------- Optimize residue side-chains **************************** Evaluate side-chains 6867 residues out of total 17142 non-(ALA, GLY, PRO) need fitting. rotamer outliers: 1532 poor density : 5335 time to evaluate : 12.084 Fit side-chains revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash revert: symmetry clash Traceback (most recent call last): File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/build/../modules/phenix/phenix/command_line/real_space_refine.py", line 8, in run_program(real_space_refine.Program) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/iotbx/cli_parser.py", line 944, in run_program task.run() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/programs/real_space_refine.py", line 189, in run log = self.logger) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/rsr/wrappers.py", line 58, in __init__ log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 303, in __init__ self.caller(self.optimize_sidechains) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 321, in caller func() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 609, in optimize_sidechains log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 83, in __init__ rotatable_hd = self.rotatable_hd) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 189, in run_one pdb_hierarchy = self.run_one_one(args=args) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/phenix/phenix/refinement/macro_cycle_real_space.py", line 133, in run_one_one log = log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 108, in __init__ self.loop(function = self.one_residue_iteration) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 284, in loop function(residue = residue) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residues.py", line 271, in one_residue_iteration log = self.log) File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 172, in __init__ self.fit_proline() File "/net/cci-filer2/raid1/xp/phenix/phenix-dev-5265/modules/cctbx_project/mmtbx/refinement/real_space/fit_residue.py", line 217, in fit_proline for rotamer, sites_cart in rotamer_iterator: TypeError: 'NoneType' object is not iterable