phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5is0_8119/02_2023/5is0_8119_trim_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5is0_8119/02_2023/5is0_8119.map refinement.macro_cycles=10 scattering_table=electron resolution=3.43 write_initial_geo_file=False >& 5is0.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5is0_8119/02_2023/5is0_8119.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5is0_8119/02_2023/5is0_8119.map 3.43
Refinement ran but no refined model file.