phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lki_4068/12_2021/5lki_4068.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lki_4068/12_2021/5lki_4068.map refinement.macro_cycles=10 scattering_table=electron resolution=3.46 write_initial_geo_file=False >& 5lki.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lki_4068/12_2021/5lki_4068.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lki_4068/12_2021/5lki_4068.map 3.46
Refinement ran but no refined model file.