phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lmv_4083/12_2021/5lmv_4083_neut_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lmv_4083/12_2021/5lmv_4083.map refinement.macro_cycles=10 scattering_table=electron resolution=4.9 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lmv_4083/12_2021/5lmv_4083_neut_ligands.cif >& 5lmv.txt failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lmv_4083/12_2021/5lmv_4083.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5lmv_4083/12_2021/5lmv_4083.map 4.9 Refinement ran but no refined model file.