phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5n8n_3600/10_2023/5n8n_3600.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5n8n_3600/10_2023/5n8n_3600.map refinement.macro_cycles=10 scattering_table=electron resolution=3.28 write_initial_geo_file=False >& 5n8n.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5n8n_3600/10_2023/5n8n_3600.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5n8n_3600/10_2023/5n8n_3600.map 3.28
Refinement ran but no refined model file.