phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5w9o_8790/05_2022/5w9o_8790.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5w9o_8790/05_2022/5w9o_8790.map refinement.macro_cycles=10 scattering_table=electron resolution=4.5 write_initial_geo_file=False >& 5w9o.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5w9o_8790/05_2022/5w9o_8790.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/5w9o_8790/05_2022/5w9o_8790.map 4.5
Refinement ran but no refined model file.