phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6az3_7025/04_2022/6az3_7025_neut_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6az3_7025/04_2022/6az3_7025.map refinement.macro_cycles=10 scattering_table=electron resolution=2.5 write_initial_geo_file=False /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6az3_7025/04_2022/6az3_7025_neut_ligands.cif >& 6az3.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6az3_7025/04_2022/6az3_7025.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6az3_7025/04_2022/6az3_7025.map 2.5
Refinement ran but no refined model file.