phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cdi_7460/12_2022/6cdi_7460_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cdi_7460/12_2022/6cdi_7460.map refinement.macro_cycles=10 scattering_table=electron resolution=3.6 write_initial_geo_file=False >& 6cdi.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cdi_7460/12_2022/6cdi_7460.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cdi_7460/12_2022/6cdi_7460.map 3.6
Refinement ran but no refined model file.