phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cp7_7549/05_2022/6cp7_7549_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cp7_7549/05_2022/6cp7_7549.map refinement.macro_cycles=10 scattering_table=electron resolution=4.1 write_initial_geo_file=False >& 6cp7.txt failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cp7_7549/05_2022/6cp7_7549.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cp7_7549/05_2022/6cp7_7549.map 4.1 Refinement ran but no refined model file.