phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cvm_7770/05_2023/6cvm_7770_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cvm_7770/05_2023/6cvm_7770.map refinement.macro_cycles=10 scattering_table=electron resolution=1.9 write_initial_geo_file=False >& 6cvm.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cvm_7770/05_2023/6cvm_7770.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6cvm_7770/05_2023/6cvm_7770.map 1.9
Refinement ran but no refined model file.