phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6e3y_8978/12_2021/6e3y_8978_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6e3y_8978/12_2021/6e3y_8978.map refinement.macro_cycles=10 scattering_table=electron resolution=3.3 write_initial_geo_file=False >& 6e3y.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6e3y_8978/12_2021/6e3y_8978.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6e3y_8978/12_2021/6e3y_8978.map 3.3
Refinement ran but no refined model file.