phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6eu1_3956/10_2023/6eu1_3956_neut.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6eu1_3956/10_2023/6eu1_3956.map refinement.macro_cycles=10 scattering_table=electron resolution=3.4 write_initial_geo_file=False >& 6eu1.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6eu1_3956/10_2023/6eu1_3956.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6eu1_3956/10_2023/6eu1_3956.map 3.4
Refinement ran but no refined model file.