phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hd7_0202/05_2023/6hd7_0202_neut_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hd7_0202/05_2023/6hd7_0202.map refinement.macro_cycles=10 scattering_table=electron resolution=3.4 write_initial_geo_file=False >& 6hd7.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hd7_0202/05_2023/6hd7_0202.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hd7_0202/05_2023/6hd7_0202.map 3.4
Refinement ran but no refined model file.