phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hlr_0240/05_2022/6hlr_0240_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hlr_0240/05_2022/6hlr_0240.map refinement.macro_cycles=10 scattering_table=electron resolution=3.18 write_initial_geo_file=False >& 6hlr.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hlr_0240/05_2022/6hlr_0240.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6hlr_0240/05_2022/6hlr_0240.map 3.18
Refinement ran but no refined model file.