phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6irt_9722/04_2022/6irt_9722_neut_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6irt_9722/04_2022/6irt_9722.map refinement.macro_cycles=10 scattering_table=electron resolution=3.5 write_initial_geo_file=False >& 6irt.txt failed. /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6irt_9722/04_2022/6irt_9722.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6irt_9722/04_2022/6irt_9722.map 3.5 Refinement ran but no refined model file.