phenix.real_space_refine /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6g_0686/05_2022/6j6g_0686_updated.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6g_0686/05_2022/6j6g_0686.map refinement.macro_cycles=10 scattering_table=electron resolution=3.2 write_initial_geo_file=False >& 6j6g.txt failed.

/net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6g_0686/05_2022/6j6g_0686.pdb /net/marbles/raid1/dorothee/rerefine/cryoem/data_no_H/6j6g_0686/05_2022/6j6g_0686.map 3.2
Refinement ran but no refined model file.